Rroxscaffold_17G00435490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000017
OG0000295
Physical Location & Seq
Reverse (-)
84984 .. 85775
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_17G00435490.1

Sequence Viewer

Length: 312 bp
ATGGTGGTGACGGGTGACGGAGAATTAGGGTTCGATTCCGGAGAGGGAGCCCGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCAATCCTGACACGGGGAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTGGGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGAGTATGGTCGCAAGGCTGAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.13

Weight (kDa)

8.01

Isoelectric Point (pI)

33.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000295)

Species Orthologous Gene IDs
pyrus_communis pycom2132g00010
rosa_roxburghii Rroxscaffold_101G00451080 Rroxscaffold_103G00450520 Rroxscaffold_105G00447130 Rroxscaffold_105G00447170 Rroxscaffold_107G00442620 Rroxscaffold_107G00442680 Rroxscaffold_107G00442720 Rroxscaffold_109G00451490 Rroxscaffold_111G00451540 Rroxscaffold_117G00451730 Rroxscaffold_119G00451820 Rroxscaffold_124G00451940 Rroxscaffold_129G00452080 Rroxscaffold_130G00452090 Rroxscaffold_133G00452140 Rroxscaffold_137G00452170 Rroxscaffold_139G00452220 Rroxscaffold_13G00448650 Rroxscaffold_13G00448660 Rroxscaffold_144G00452230 Rroxscaffold_147G00452260 Rroxscaffold_15G00447540 Rroxscaffold_15G00447550 Rroxscaffold_15G00447560 Rroxscaffold_16G00446230 Rroxscaffold_17G00435400 Rroxscaffold_17G00435490 Rroxscaffold_17G00435550 Rroxscaffold_17G00435630 Rroxscaffold_17G00435670 Rroxscaffold_17G00435740 Rroxscaffold_17G00435750 Rroxscaffold_17G00435820 Rroxscaffold_17G00435830 Rroxscaffold_17G00435890 Rroxscaffold_17G00435900 Rroxscaffold_1G00000120 Rroxscaffold_1G00000140 Rroxscaffold_1G00000170 Rroxscaffold_20G00445080 Rroxscaffold_21G00439530 Rroxscaffold_21G00439610 Rroxscaffold_22G00439860 Rroxscaffold_22G00439960 Rroxscaffold_24G00445010 Rroxscaffold_26G00447780 Rroxscaffold_27G00446620 Rroxscaffold_27G00446630 Rroxscaffold_28G00446940 Rroxscaffold_28G00446950 Rroxscaffold_28G00446960 Rroxscaffold_29G00441540 Rroxscaffold_29G00441550 Rroxscaffold_32G00442730 Rroxscaffold_32G00442850 Rroxscaffold_33G00439730 Rroxscaffold_36G00440150 Rroxscaffold_37G00445150 Rroxscaffold_38G00444610 Rroxscaffold_38G00444640 Rroxscaffold_39G00448190 Rroxscaffold_39G00448240 Rroxscaffold_39G00448250 Rroxscaffold_40G00447690 Rroxscaffold_42G00450450 Rroxscaffold_44G00440620 Rroxscaffold_44G00440650 Rroxscaffold_45G00438830 Rroxscaffold_45G00438970 Rroxscaffold_46G00448710 Rroxscaffold_46G00448750 Rroxscaffold_47G00444030 Rroxscaffold_51G00447880 Rroxscaffold_52G00439410 Rroxscaffold_55G00450110 Rroxscaffold_56G00450960 Rroxscaffold_57G00443090 Rroxscaffold_57G00443100 Rroxscaffold_58G00448990 Rroxscaffold_58G00449030 Rroxscaffold_58G00449040 Rroxscaffold_59G00442100 Rroxscaffold_59G00442110 Rroxscaffold_59G00442120 Rroxscaffold_59G00442130 Rroxscaffold_60G00448420 Rroxscaffold_61G00449960 Rroxscaffold_61G00449980 Rroxscaffold_62G00437950 Rroxscaffold_65G00445320 Rroxscaffold_65G00445330 Rroxscaffold_67G00448110 Rroxscaffold_67G00448180 Rroxscaffold_6G00387750 Rroxscaffold_70G00446410 Rroxscaffold_73G00439300 Rroxscaffold_74G00442880 Rroxscaffold_74G00442940 Rroxscaffold_75G00447420 Rroxscaffold_76G00448560 Rroxscaffold_77G00449170 Rroxscaffold_77G00449180 Rroxscaffold_77G00449190 Rroxscaffold_77G00449200 Rroxscaffold_81G00450460 Rroxscaffold_81G00450470 Rroxscaffold_82G00450790 Rroxscaffold_82G00450800 Rroxscaffold_84G00451000 Rroxscaffold_84G00451010 Rroxscaffold_90G00448800 Rroxscaffold_91G00442990 Rroxscaffold_91G00443020 Rroxscaffold_91G00443030 Rroxscaffold_91G00443050 Rroxscaffold_92G00446530 Rroxscaffold_93G00440920 Rroxscaffold_95G00449220 Rroxscaffold_96G00449120 Rroxscaffold_96G00449130 Rroxscaffold_96G00449140 Rroxscaffold_98G00451330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AccII CGCG 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 38
AciI CCGC 2 cut(s) 224, 245
AclWI GGATC 1 cut(s) 226
AfiI CCNNNNNNNGG 3 cut(s) 58, 112, 220
AjnI CCWGG 1 cut(s) 213
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 1 cut(s) 226
Ama87I CYCGRG 1 cut(s) 51
Aor13HI TCCGGA 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 81
AseI ATTAAT 1 cut(s) 141
AspLEI GCGC 2 cut(s) 90, 92
AsuC2I CCSGG 1 cut(s) 283
AsuHPI GGTGA 2 cut(s) 19, 26
AvaI CYCGRG 1 cut(s) 51
BanI GGYRCC 1 cut(s) 250
BanII GRGCYC 2 cut(s) 52, 166
BbsI GAAGAC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 93
BceAI ACGGC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 215
BcnI CCSGG 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 188
BisI GCNGC 1 cut(s) 82
BlsI GCNGC 1 cut(s) 83
Bme1390I CCNGG 2 cut(s) 215, 283
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 3 cut(s) 49, 252, 280
BmrFI CCNGG 2 cut(s) 215, 283
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 175
BpuMI CCSGG 1 cut(s) 283
BsaJI CCNNGG 4 cut(s) 72, 126, 214, 282
BsaWI WCCGGW 1 cut(s) 38
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 112, 220
Bse118I RCCGGY 1 cut(s) 247
BseAI TCCGGA 1 cut(s) 38
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 4 cut(s) 72, 126, 214, 282
BseGI GGATG 3 cut(s) 68, 136, 232
BseLI CCNNNNNNNGG 3 cut(s) 58, 112, 220
BsePI GCGCGC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 3 cut(s) 39, 248, 282
BslI CCNNNNNNNGG 3 cut(s) 58, 112, 220
BsmAI GTCTC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 52, 166
Bsp13I TCCGGA 1 cut(s) 38
Bsp143I GATC 2 cut(s) 173, 218
BspACI CCGC 2 cut(s) 224, 245
BspEI TCCGGA 1 cut(s) 38
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 49, 252, 280
BspPI GGATC 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 247
BssAI RCCGGY 1 cut(s) 247
BssECI CCNNGG 4 cut(s) 72, 126, 214, 282
BssHII GCGCGC 1 cut(s) 88
BssMI GATC 2 cut(s) 173, 218
BssT1I CCWWGG 2 cut(s) 72, 126
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 184
BstC8I GCNNGC 3 cut(s) 86, 90, 249
BstF5I GGATG 3 cut(s) 68, 136, 232
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 2 cut(s) 90, 92
BstKTI GATC 2 cut(s) 176, 221
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 2 cut(s) 173, 218
BstMWI GCNNNNNNNGC 1 cut(s) 87
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 2 cut(s) 213, 281
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 175
BtsCI GGATG 3 cut(s) 68, 136, 232
Cac8I GCNNGC 3 cut(s) 86, 90, 249
CfoI GCGC 2 cut(s) 90, 92
Cfr10I RCCGGY 1 cut(s) 247
CviJI RGCY 4 cut(s) 50, 62, 164, 302
CviKI_1 RGCY 4 cut(s) 50, 62, 164, 302
DpnI GATC 2 cut(s) 175, 220
DpnII GATC 2 cut(s) 173, 218
EciI GGCGGA 2 cut(s) 234, 239
Eco130I CCWWGG 2 cut(s) 72, 126
Eco24I GRGCYC 2 cut(s) 52, 166
Eco88I CYCGRG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 2 cut(s) 72, 126
EcoT38I GRGCYC 2 cut(s) 52, 166
ErhI CCWWGG 2 cut(s) 72, 126
FaiI YATR 3 cut(s) 200, 258, 291
Fnu4HI GCNGC 1 cut(s) 82
FokI GGATG 3 cut(s) 55, 143, 239
FriOI GRGCYC 2 cut(s) 52, 166
Fsp4HI GCNGC 1 cut(s) 82
FspBI CTAG 1 cut(s) 188
GlaI GCGC 2 cut(s) 89, 91
GluI GCNGC 1 cut(s) 82
HapII CCGG 3 cut(s) 39, 248, 282
HhaI GCGC 2 cut(s) 90, 92
Hin6I GCGC 2 cut(s) 88, 90
HinP1I GCGC 2 cut(s) 88, 90
HinfI GANTC 2 cut(s) 35, 241
HpaII CCGG 3 cut(s) 39, 248, 282
HphI GGTGA 2 cut(s) 19, 26
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 3 cut(s) 39, 106, 146
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 87
HspAI GCGC 2 cut(s) 88, 90
Kpn2I TCCGGA 1 cut(s) 38
KroI GCCGGC 1 cut(s) 247
KroNI GCCGGC 1 cut(s) 249
Kzo9I GATC 2 cut(s) 173, 218
LmnI GCTCC 2 cut(s) 47, 116
LpnPI CCDG 7 cut(s) 52, 70, 119, 200, 227, 261, 295
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 3 cut(s) 7, 14, 229
MalI GATC 2 cut(s) 175, 220
MboI GATC 2 cut(s) 173, 218
MboII GAAGA 1 cut(s) 180
MhlI GDGCHC 2 cut(s) 52, 166
MluCI AATT 2 cut(s) 23, 94
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 1 cut(s) 37
MroI TCCGGA 1 cut(s) 38
MroNI GCCGGC 1 cut(s) 247
MseI TTAA 2 cut(s) 141, 310
MspI CCGG 3 cut(s) 39, 248, 282
MspR9I CCNGG 2 cut(s) 215, 283
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 87
NaeI GCCGGC 1 cut(s) 249
NciI CCSGG 1 cut(s) 283
NdeII GATC 2 cut(s) 173, 218
NgoMIV GCCGGC 1 cut(s) 247
NlaIV GGNNCC 3 cut(s) 49, 252, 280
NmuCI GTSAC 2 cut(s) 7, 14
PauI GCGCGC 1 cut(s) 88
PdiI GCCGGC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 35
PkrI GCNGC 1 cut(s) 83
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 3 cut(s) 49, 252, 280
PteI GCGCGC 1 cut(s) 88
SaqAI TTAA 2 cut(s) 141, 310
SatI GCNGC 1 cut(s) 82
Sau3AI GATC 2 cut(s) 173, 218
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 215, 283
SduI GDGCHC 2 cut(s) 52, 166
SetI ASST 1 cut(s) 256
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 2 cut(s) 23, 94
SsiI CCGC 2 cut(s) 224, 245
SspMI CTAG 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 213, 281
StyI CCWWGG 2 cut(s) 72, 126
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 2 cut(s) 33, 166
TasI AATT 2 cut(s) 23, 94
TfiI GAWTC 1 cut(s) 35
Tru1I TTAA 2 cut(s) 141, 310
Tru9I TTAA 2 cut(s) 141, 310
TseFI GTSAC 2 cut(s) 7, 14
TseI GCWGC 1 cut(s) 81
Tsp45I GTSAC 2 cut(s) 7, 14
TspDTI ATGAA 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 33
VspI ATTAAT 1 cut(s) 141
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.