Rroxscaffold_46G00448710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000046
OG0000295
Physical Location & Seq
Forward (+)
3238 .. 4487
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_46G00448710.1

Sequence Viewer

Length: 237 bp
ATGTACGACCGCCGTGCTCGTTGCAGGTCTCCCTACGCGGTGCCAGCCGTTGTCAAAGGAATGCTACCTGTCTCAACCATAAACGATGCCGACCAGGGATCGGCGGATGTTACTTTTAGGACTCCGCCGCACCTTATGAGAAATCAAAGTTTTTGGGTTCCGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGAGTGGAGCCTCGCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.61

Weight (kDa)

10.16

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000295)

Species Orthologous Gene IDs
pyrus_communis pycom2132g00010
rosa_roxburghii Rroxscaffold_101G00451080 Rroxscaffold_103G00450520 Rroxscaffold_105G00447130 Rroxscaffold_105G00447170 Rroxscaffold_107G00442620 Rroxscaffold_107G00442680 Rroxscaffold_107G00442720 Rroxscaffold_109G00451490 Rroxscaffold_111G00451540 Rroxscaffold_117G00451730 Rroxscaffold_119G00451820 Rroxscaffold_124G00451940 Rroxscaffold_129G00452080 Rroxscaffold_130G00452090 Rroxscaffold_133G00452140 Rroxscaffold_137G00452170 Rroxscaffold_139G00452220 Rroxscaffold_13G00448650 Rroxscaffold_13G00448660 Rroxscaffold_144G00452230 Rroxscaffold_147G00452260 Rroxscaffold_15G00447540 Rroxscaffold_15G00447550 Rroxscaffold_15G00447560 Rroxscaffold_16G00446230 Rroxscaffold_17G00435400 Rroxscaffold_17G00435490 Rroxscaffold_17G00435550 Rroxscaffold_17G00435630 Rroxscaffold_17G00435670 Rroxscaffold_17G00435740 Rroxscaffold_17G00435750 Rroxscaffold_17G00435820 Rroxscaffold_17G00435830 Rroxscaffold_17G00435890 Rroxscaffold_17G00435900 Rroxscaffold_1G00000120 Rroxscaffold_1G00000140 Rroxscaffold_1G00000170 Rroxscaffold_20G00445080 Rroxscaffold_21G00439530 Rroxscaffold_21G00439610 Rroxscaffold_22G00439860 Rroxscaffold_22G00439960 Rroxscaffold_24G00445010 Rroxscaffold_26G00447780 Rroxscaffold_27G00446620 Rroxscaffold_27G00446630 Rroxscaffold_28G00446940 Rroxscaffold_28G00446950 Rroxscaffold_28G00446960 Rroxscaffold_29G00441540 Rroxscaffold_29G00441550 Rroxscaffold_32G00442730 Rroxscaffold_32G00442850 Rroxscaffold_33G00439730 Rroxscaffold_36G00440150 Rroxscaffold_37G00445150 Rroxscaffold_38G00444610 Rroxscaffold_38G00444640 Rroxscaffold_39G00448190 Rroxscaffold_39G00448240 Rroxscaffold_39G00448250 Rroxscaffold_40G00447690 Rroxscaffold_42G00450450 Rroxscaffold_44G00440620 Rroxscaffold_44G00440650 Rroxscaffold_45G00438830 Rroxscaffold_45G00438970 Rroxscaffold_46G00448710 Rroxscaffold_46G00448750 Rroxscaffold_47G00444030 Rroxscaffold_51G00447880 Rroxscaffold_52G00439410 Rroxscaffold_55G00450110 Rroxscaffold_56G00450960 Rroxscaffold_57G00443090 Rroxscaffold_57G00443100 Rroxscaffold_58G00448990 Rroxscaffold_58G00449030 Rroxscaffold_58G00449040 Rroxscaffold_59G00442100 Rroxscaffold_59G00442110 Rroxscaffold_59G00442120 Rroxscaffold_59G00442130 Rroxscaffold_60G00448420 Rroxscaffold_61G00449960 Rroxscaffold_61G00449980 Rroxscaffold_62G00437950 Rroxscaffold_65G00445320 Rroxscaffold_65G00445330 Rroxscaffold_67G00448110 Rroxscaffold_67G00448180 Rroxscaffold_6G00387750 Rroxscaffold_70G00446410 Rroxscaffold_73G00439300 Rroxscaffold_74G00442880 Rroxscaffold_74G00442940 Rroxscaffold_75G00447420 Rroxscaffold_76G00448560 Rroxscaffold_77G00449170 Rroxscaffold_77G00449180 Rroxscaffold_77G00449190 Rroxscaffold_77G00449200 Rroxscaffold_81G00450460 Rroxscaffold_81G00450470 Rroxscaffold_82G00450790 Rroxscaffold_82G00450800 Rroxscaffold_84G00451000 Rroxscaffold_84G00451010 Rroxscaffold_90G00448800 Rroxscaffold_91G00442990 Rroxscaffold_91G00443020 Rroxscaffold_91G00443030 Rroxscaffold_91G00443050 Rroxscaffold_92G00446530 Rroxscaffold_93G00440920 Rroxscaffold_95G00449220 Rroxscaffold_96G00449120 Rroxscaffold_96G00449130 Rroxscaffold_96G00449140 Rroxscaffold_98G00451330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 15
AccB1I GGYRCC 2 cut(s) 40, 208
AccII CGCG 2 cut(s) 38, 230
AciI CCGC 6 cut(s) 10, 38, 104, 125, 128, 230
AclWI GGATC 1 cut(s) 106
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 100
AjnI CCWGG 1 cut(s) 93
AleI CACNNNNGTG 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 33, 76
AlwI GGATC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 211
BanI GGYRCC 2 cut(s) 40, 208
Bbv12I GWGCWC 1 cut(s) 19
BceAI ACGGC 1 cut(s) 32
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 95
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 33, 76
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 2 cut(s) 128, 231
BlsI GCNGC 2 cut(s) 129, 232
Bme1390I CCNGG 2 cut(s) 95, 162
BmiI GGNNCC 4 cut(s) 42, 159, 210, 224
BmrFI CCNGG 2 cut(s) 95, 162
BmsI GCATC 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 2 cut(s) 94, 161
Bsc4I CCNNNNNNNGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 94, 161
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 211
Bsh1236I CGCG 2 cut(s) 38, 230
Bsh1285I CGRYCG 1 cut(s) 10
BshNI GGYRCC 2 cut(s) 40, 208
BsiEI CGRYCG 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 2 cut(s) 33, 76
BsmI GAATGC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 33
Bsp1286I GDGCHC 2 cut(s) 19, 211
Bsp143I GATC 1 cut(s) 98
BspACI CCGC 6 cut(s) 10, 38, 104, 125, 128, 230
BspFNI CGCG 2 cut(s) 38, 230
BspLI GGNNCC 4 cut(s) 42, 159, 210, 224
BspMI ACCTGC 1 cut(s) 15
BspPI GGATC 1 cut(s) 106
BspT107I GGYRCC 2 cut(s) 40, 208
BspTNI GGTCTC 1 cut(s) 33
BssECI CCNNGG 2 cut(s) 94, 161
BssMI GATC 1 cut(s) 98
Bst2UI CCWGG 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 45
BstF5I GGATG 1 cut(s) 112
BstFNI CGCG 2 cut(s) 38, 230
BstKTI GATC 1 cut(s) 101
BstMAI GTCTC 2 cut(s) 33, 76
BstMBI GATC 1 cut(s) 98
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 1 cut(s) 95
BstSCI CCNGG 2 cut(s) 93, 160
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 2 cut(s) 38, 230
BstXI CCANNNNNNTGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 112
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 4 cut(s) 47, 181, 225, 233
CviKI_1 RGCY 4 cut(s) 47, 181, 225, 233
CviQI GTAC 1 cut(s) 4
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
EciI GGCGGA 2 cut(s) 114, 119
Eco31I GGTCTC 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 93
FaiI YATR 3 cut(s) 80, 137, 170
Fnu4HI GCNGC 2 cut(s) 128, 231
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 128, 231
GluI GCNGC 2 cut(s) 128, 231
HapII CCGG 1 cut(s) 161
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 7 cut(s) 10, 57, 80, 81, 107, 174, 228
LweI GCATC 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MhlI GDGCHC 2 cut(s) 19, 211
MluCI AATT 1 cut(s) 195
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 1 cut(s) 236
MseI TTAA 2 cut(s) 189, 235
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 95, 162
Mva1269I GAATGC 1 cut(s) 66
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 2 cut(s) 38, 230
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 1 cut(s) 162
NdeII GATC 1 cut(s) 98
NlaIV GGNNCC 4 cut(s) 42, 159, 210, 224
OliI CACNNNNGTG 1 cut(s) 217
PctI GAATGC 1 cut(s) 66
PkrI GCNGC 2 cut(s) 129, 232
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 93
PspGI CCWGG 1 cut(s) 93
PspN4I GGNNCC 4 cut(s) 42, 159, 210, 224
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 2 cut(s) 189, 235
SatI GCNGC 2 cut(s) 128, 231
Sau3AI GATC 1 cut(s) 98
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 95, 162
SduI GDGCHC 2 cut(s) 19, 211
SetI ASST 3 cut(s) 29, 70, 135
SfaNI GCATC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 1 cut(s) 195
SsiI CCGC 6 cut(s) 10, 38, 104, 125, 128, 230
StyD4I CCNGG 2 cut(s) 93, 160
TasI AATT 1 cut(s) 195
TauI GCSGC 2 cut(s) 130, 233
Tru1I TTAA 2 cut(s) 189, 235
Tru9I TTAA 2 cut(s) 189, 235
TspGWI ACGGA 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.