Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0005321

Physical Location & Seq

Genomic Coordinates Reverse (-)

986403 .. 994969

Gene Structure 8567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGCTAGCTTTAAACTCGCAGAAGCACATCATGAATCTGAAATACAAGATAGTTAAAAGCCAATGTCCACCTAGAACTGGTAGGGATCAGCATTCTGGGTCAGATGACACACACTCTCGCACGGCAGAGCTTTCAGAGTCCAATTCTTATTTTGGAATGGAACCTAATCAAGTGAAGCTTCTAAAGCAGGAAAAAGTTGCATGCTTAGATGATAATGATGTGAGGCTTGCAGTAGACCCACATAATAAGTACAGGATTCAGACCAAACCTCATGGGCATGGCGATGTGCATTCACTACTCTACTCTAGTGGTCTCCTCAGTGAATGGCATGATGCTGGTATGAGATGGGTTCTATTCTTCCAAGATACAAATGGACTTCTGTTCAATGAAATTCCAGCGTCATTGGGTGTTAGTGCTACAAGACACTACCATGTTAACTCCCAAGCTTTTCCACGCAAAGCAAAAGAAGCAATTGGAGGAATTACCCGACTTACTCATGCTGATGGGAGGTCAATGGTGATCAATGTGGAGTACAACCAGCTTGATTCACTTCTTAGAGCAACTGGATTTCCTGACGGTGATGTCAATTGTGAGACCGGTTATTCTCCTTTCCCTGGGAATATCAACCAATTAATCTCGGAACTTGGTCCATATATTGAGGAGCTCACAAAAACAGGAGGTGCCATAAAGGAGTTTGTTAACCCAAAATACAAAGATGCTAGTAAGACTTCATTTAAGTCCTCAACTCGGTTAGAGTGTATGATGCAAGACTACCCAAAAACTTTGCCTCCATCTGCTAGGGTGGGATTCACGGTAATGGAACCATGGTTTGCTTATGCACCTATGAAGAACAACCCTGAGGATGCTGCTCAGGCTGGAGTCCAATTAGCTGATCCAGCACAACAGGTGTTCAACAGTCAAGAAATTGAAGTGTGGCCTCGTATCACATGGAAACCAAAATGGGCCGTCACTTTTAAAGAAGTTAAAAACAAAGTCGGTGGAAGTAGCTCAATTTCTCAGAGGTCTACATTAGTTATGAGGGTGGCCGTAATATCTTTATCAAGGATCTCTCCTTGGATGGGGCTCTTATTATCGATGTTGCTGGTGATAAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009555 GO:0009987 GO:0010035 GO:0010038 GO:0010491 GO:0016740 GO:0016772 GO:0016779 GO:0017103 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0033356 GO:0034641 GO:0034654 GO:0042221 GO:0042995 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046398 GO:0046483 GO:0046686 GO:0047338 GO:0047350 GO:0048229 GO:0048856 GO:0050896 GO:0051748 GO:0052573 GO:0055086 GO:0070569 GO:0071704 GO:0090406 GO:0120025 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00053 ko00520 ko01100 ko01130 map00040 map00052 map00053 map00520 map01100 map01130

Pfam Domains

Protein Families

UDPGP

Protein Analysis

372

Amino Acids

41.64

Weight (kDa)

8.97

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52560
fragaria_vesca	FvH4_2g28000 FvH4_2g28000
malus_domestica	MD15G1133100.v1.1
prunus_persica	Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1
pyrus_communis	pycom15g12000
rosa_chinensis	RchiOBHm_Chr6g0296821
rosa_laevigata	RLG00000011655
rosa_multiflora	Rmu_sc0009497.1_g000007
rosa_roxburghii	Rroxscaffold_176G00431360 Rroxscaffold_7G00171130 Rroxscaffold_7G00203680 Rroxscaffold_7G00203690
rosa_rugosa	Rorug04G0447400 Rorug04G0447500 Rorug04G0447600 Rorug04G0447600 Rorug04G0447600 Rorug04G0447700 Rorug04G0447800 Rorug06G0266800
rosa_samantha	Rh5BG073600 Rh6BG385800 Rh6DG378100
rosa_wichuraiana	Rw6G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	581
AccB1I	GGYRCC	1 cut(s)	680
AccI	GTMKAC	2 cut(s)	234, 1025
AclWI	GGATC	3 cut(s)	93, 887, 1073
AcoI	YGGCCR	1 cut(s)	1044
AcsI	RAATTY	1 cut(s)	390
AfaI	GTAC	2 cut(s)	251, 533
AfiI	CCNNNNNNNGG	4 cut(s)	77, 614, 747, 1079
AgeI	ACCGGT	1 cut(s)	596
AgsI	TTSAA	3 cut(s)	385, 913, 929
AjnI	CCWGG	1 cut(s)	613
AluBI	AGCT	8 cut(s)	8, 130, 178, 446, 541, 664, 890, 1008
AluI	AGCT	8 cut(s)	8, 130, 178, 446, 541, 664, 890, 1008
Alw21I	GWGCWC	1 cut(s)	666
Alw26I	GTCTC	2 cut(s)	317, 587
AlwI	GGATC	3 cut(s)	93, 887, 1073
AoxI	GGCC	3 cut(s)	935, 963, 1044
ApeKI	GCWGC	1 cut(s)	866
ApoI	RAATTY	1 cut(s)	390
AseI	ATTAAT	1 cut(s)	632
AsiGI	ACCGGT	1 cut(s)	596
AspS9I	GGNCC	2 cut(s)	647, 963
AsuHPI	GGTGA	3 cut(s)	529, 590, 1117
AsuNHI	GCTAGC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	647
AxyI	CCTNAGG	1 cut(s)	858
BanI	GGYRCC	1 cut(s)	680
BanII	GRGCYC	2 cut(s)	666, 1086
Bbv12I	GWGCWC	1 cut(s)	666
BbvI	GCAGC	1 cut(s)	853
BccI	CCATC	4 cut(s)	339, 497, 799, 1072
BceAI	ACGGC	3 cut(s)	138, 950, 1031
BciT130I	CCWGG	1 cut(s)	615
BclI	TGATCA	1 cut(s)	519
BcoDI	GTCTC	2 cut(s)	317, 587
BfaI	CTAG	5 cut(s)	5, 72, 306, 720, 798
BisI	GCNGC	1 cut(s)	867
BlsI	GCNGC	1 cut(s)	868
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	647, 963
BmiI	GGNNCC	3 cut(s)	162, 682, 822
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	4 cut(s)	322, 706, 753, 853
BmtI	GCTAGC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	897
Bpu10I	CCTNAGC	1 cut(s)	870
Bsa29I	ATCGAT	1 cut(s)	1094
BsaI	GGTCTC	2 cut(s)	317, 587
BsaJI	CCNNGG	4 cut(s)	613, 614, 824, 1073
BsaWI	WCCGGW	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	772, 802
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 614, 747, 1079
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	2 cut(s)	82, 568
Bse21I	CCTNAGG	1 cut(s)	858
BseBI	CCWGG	1 cut(s)	615
BseCI	ATCGAT	1 cut(s)	1094
BseDI	CCNNGG	4 cut(s)	613, 614, 824, 1073
BseGI	GGATG	2 cut(s)	868, 1083
BseLI	CCNNNNNNNGG	4 cut(s)	77, 614, 747, 1079
BseMII	CTCAG	4 cut(s)	331, 849, 884, 1031
BseNI	ACTGG	2 cut(s)	82, 568
BseRI	GAGGAG	2 cut(s)	305, 674
BseXI	GCAGC	1 cut(s)	853
BshFI	GGCC	3 cut(s)	937, 965, 1046
BshNI	GGYRCC	1 cut(s)	680
BshTI	ACCGGT	1 cut(s)	596
BshVI	ATCGAT	1 cut(s)	1094
BsiHKAI	GWGCWC	1 cut(s)	666
BsiSI	CCGG	1 cut(s)	597
BslI	CCNNNNNNNGG	4 cut(s)	77, 614, 747, 1079
BsmAI	GTCTC	2 cut(s)	317, 587
BsmI	GAATGC	2 cut(s)	91, 289
BsnI	GGCC	3 cut(s)	937, 965, 1046
Bso31I	GGTCTC	2 cut(s)	317, 587
Bsp1286I	GDGCHC	2 cut(s)	666, 1086
Bsp143I	GATC	4 cut(s)	85, 519, 892, 1065
Bsp19I	CCATGG	1 cut(s)	824
BspANI	GGCC	3 cut(s)	937, 965, 1046
BspCNI	CTCAG	4 cut(s)	330, 850, 883, 1030
BspDI	ATCGAT	1 cut(s)	1094
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	162, 682, 822
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	3 cut(s)	93, 887, 1073
BspT107I	GGYRCC	1 cut(s)	680
BspTNI	GGTCTC	2 cut(s)	317, 587
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	82, 568
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	4 cut(s)	613, 614, 824, 1073
BssMI	GATC	4 cut(s)	85, 519, 892, 1065
BssT1I	CCWWGG	2 cut(s)	824, 1073
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	3 cut(s)	578, 814, 917
BstC8I	GCNNGC	3 cut(s)	6, 202, 228
BstDEI	CTNAG	6 cut(s)	205, 317, 554, 858, 870, 1017
BstDSI	CCRYGG	1 cut(s)	824
BstF5I	GGATG	2 cut(s)	868, 1083
BstKTI	GATC	4 cut(s)	88, 522, 895, 1068
BstMAI	GTCTC	2 cut(s)	317, 587
BstMBI	GATC	4 cut(s)	85, 519, 892, 1065
BstMWI	GCNNNNNNNGC	4 cut(s)	184, 467, 872, 896
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	853
BstX2I	RGATCY	1 cut(s)	1065
BstYI	RGATCY	1 cut(s)	1065
Bsu15I	ATCGAT	1 cut(s)	1094
Bsu36I	CCTNAGG	1 cut(s)	858
BsuRI	GGCC	3 cut(s)	937, 965, 1046
BsuTUI	ATCGAT	1 cut(s)	1094
BtgI	CCRYGG	1 cut(s)	824
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	868, 1083
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	3 cut(s)	6, 202, 228
CciI	TCATGA	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	2 cut(s)	647, 963
ClaI	ATCGAT	1 cut(s)	1094
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	250, 532
CspAI	ACCGGT	1 cut(s)	596
CspCI	CAANNNNNGTGG	2 cut(s)	979, 1014
CviAII	CATG	9 cut(s)	31, 201, 272, 278, 329, 431, 497, 825, 948
CviQI	GTAC	2 cut(s)	250, 532
DdeI	CTNAG	6 cut(s)	205, 317, 554, 858, 870, 1017
DpnI	GATC	4 cut(s)	87, 521, 894, 1067
DpnII	GATC	4 cut(s)	85, 519, 892, 1065
DraI	TTTAAA	2 cut(s)	12, 976
DrdI	GACNNNNNNGTC	1 cut(s)	581
DseDI	GACNNNNNNGTC	1 cut(s)	581
EaeI	YGGCCR	1 cut(s)	1044
Ecl136II	GAGCTC	1 cut(s)	664
Eco130I	CCWWGG	2 cut(s)	824, 1073
Eco24I	GRGCYC	2 cut(s)	666, 1086
Eco31I	GGTCTC	2 cut(s)	317, 587
Eco47I	GGWCC	1 cut(s)	647
Eco53kI	GAGCTC	1 cut(s)	664
Eco81I	CCTNAGG	1 cut(s)	858
EcoICRI	GAGCTC	1 cut(s)	664
EcoRII	CCWGG	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	824, 1073
EcoT38I	GRGCYC	2 cut(s)	666, 1086
ErhI	CCWWGG	2 cut(s)	824, 1073
FaeI	CATG	9 cut(s)	34, 204, 275, 281, 332, 434, 500, 828, 951
FalI	AAGNNNNNCTT	2 cut(s)	162, 194
FatI	CATG	9 cut(s)	30, 200, 271, 277, 328, 430, 496, 824, 947
FbaI	TGATCA	1 cut(s)	519
FblI	GTMKAC	2 cut(s)	234, 1025
Fnu4HI	GCNGC	1 cut(s)	867
FokI	GGATG	2 cut(s)	875, 1090
FriOI	GRGCYC	2 cut(s)	666, 1086
Fsp4HI	GCNGC	1 cut(s)	867
FspBI	CTAG	5 cut(s)	5, 72, 306, 720, 798
GluI	GCNGC	1 cut(s)	867
GsuI	CTGGAG	1 cut(s)	897
HaeIII	GGCC	3 cut(s)	937, 965, 1046
HapII	CCGG	1 cut(s)	597
HgaI	GACGC	1 cut(s)	387
Hin1II	CATG	9 cut(s)	34, 204, 275, 281, 332, 434, 500, 828, 951
HincII	GTYRAC	2 cut(s)	436, 700
HindII	GTYRAC	2 cut(s)	436, 700
HindIII	AAGCTT	2 cut(s)	176, 444
HinfI	GANTC	6 cut(s)	34, 137, 256, 545, 807, 879
HpaI	GTTAAC	2 cut(s)	436, 700
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	3 cut(s)	529, 590, 1117
Hpy166II	GTNNAC	5 cut(s)	68, 235, 436, 700, 1026
Hpy188I	TCNGA	6 cut(s)	39, 103, 136, 261, 640, 1020
Hpy188III	TCNNGA	3 cut(s)	31, 572, 920
Hpy8I	GTNNAC	5 cut(s)	68, 235, 436, 700, 1026
HpyCH4III	ACNGT	3 cut(s)	578, 814, 917
HpyCH4V	TGCA	5 cut(s)	200, 230, 289, 766, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	184, 467, 872, 896
HpyF3I	CTNAG	6 cut(s)	205, 317, 554, 858, 870, 1017
Hsp92II	CATG	9 cut(s)	34, 204, 275, 281, 332, 434, 500, 828, 951
Ksp22I	TGATCA	1 cut(s)	519
KspAI	GTTAAC	2 cut(s)	436, 700
Kzo9I	GATC	4 cut(s)	85, 519, 892, 1065
LmnI	GCTCC	1 cut(s)	661
Lsp1109I	GCAGC	1 cut(s)	853
LweI	GCATC	4 cut(s)	322, 706, 753, 853
MaeI	CTAG	5 cut(s)	5, 72, 306, 720, 798
MaeIII	GTNAC	1 cut(s)	967
MalI	GATC	4 cut(s)	87, 521, 894, 1067
MboI	GATC	4 cut(s)	85, 519, 892, 1065
MboII	GAAGA	2 cut(s)	349, 859
MfeI	CAATTG	2 cut(s)	471, 586
MflI	RGATCY	1 cut(s)	1065
MhlI	GDGCHC	2 cut(s)	666, 1086
MluCI	AATT	9 cut(s)	142, 390, 471, 480, 586, 629, 884, 924, 1011
MlyI	GAGTC	2 cut(s)	146, 888
MseI	TTAA	8 cut(s)	11, 54, 435, 632, 699, 735, 975, 984
MslI	CAYNNNNRTG	5 cut(s)	276, 282, 429, 501, 815
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	1 cut(s)	615
MunI	CAATTG	2 cut(s)	471, 586
Mva1269I	GAATGC	2 cut(s)	91, 289
MvaI	CCWGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	4 cut(s)	184, 467, 872, 896
NcoI	CCATGG	1 cut(s)	824
NdeII	GATC	4 cut(s)	85, 519, 892, 1065
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	9 cut(s)	34, 204, 275, 281, 332, 434, 500, 828, 951
NlaIV	GGNNCC	3 cut(s)	162, 682, 822
NmuCI	GTSAC	1 cut(s)	967
NspI	RCATGY	1 cut(s)	204
PaeI	GCATGC	1 cut(s)	204
PagI	TCATGA	1 cut(s)	30
PasI	CCCWGGG	1 cut(s)	614
PctI	GAATGC	2 cut(s)	91, 289
PfeI	GAWTC	4 cut(s)	34, 256, 545, 807
PinAI	ACCGGT	1 cut(s)	596
PkrI	GCNGC	1 cut(s)	868
PleI	GAGTC	2 cut(s)	145, 887
PpsI	GAGTC	2 cut(s)	145, 887
PshBI	ATTAAT	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspN4I	GGNNCC	3 cut(s)	162, 682, 822
PspPI	GGNCC	2 cut(s)	647, 963
PsuI	RGATCY	1 cut(s)	1065
RsaI	GTAC	2 cut(s)	251, 533
RsaNI	GTAC	2 cut(s)	250, 532
RseI	CAYNNNNRTG	5 cut(s)	276, 282, 429, 501, 815
SacI	GAGCTC	1 cut(s)	666
SaqAI	TTAA	8 cut(s)	11, 54, 435, 632, 699, 735, 975, 984
SatI	GCNGC	1 cut(s)	867
Sau3AI	GATC	4 cut(s)	85, 519, 892, 1065
Sau96I	GGNCC	2 cut(s)	647, 963
SchI	GAGTC	2 cut(s)	146, 888
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	2 cut(s)	666, 1086
SfaNI	GCATC	4 cut(s)	322, 706, 753, 853
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	5 cut(s)	276, 282, 429, 501, 815
SphI	GCATGC	1 cut(s)	204
Sse9I	AATT	9 cut(s)	142, 390, 471, 480, 586, 629, 884, 924, 1011
SspMI	CTAG	5 cut(s)	5, 72, 306, 720, 798
SstI	GAGCTC	1 cut(s)	666
StyD4I	CCNGG	1 cut(s)	613
StyI	CCWWGG	2 cut(s)	824, 1073
TaaI	ACNGT	3 cut(s)	578, 814, 917
TaqI	TCGA	1 cut(s)	1094
TasI	AATT	9 cut(s)	142, 390, 471, 480, 586, 629, 884, 924, 1011
TatI	WGTACW	2 cut(s)	249, 531
TfiI	GAWTC	4 cut(s)	34, 256, 545, 807
Tru1I	TTAA	8 cut(s)	11, 54, 435, 632, 699, 735, 975, 984
Tru9I	TTAA	8 cut(s)	11, 54, 435, 632, 699, 735, 975, 984
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	967
TseI	GCWGC	1 cut(s)	866
Tsp45I	GTSAC	1 cut(s)	967
TspDTI	ATGAA	4 cut(s)	47, 402, 720, 860
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	647
VspI	ATTAAT	1 cut(s)	632
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	368
XmiI	GTMKAC	2 cut(s)	234, 1025
XspI	CTAG	5 cut(s)	5, 72, 306, 720, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.