Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005321

Physical Location & Seq

Genomic Coordinates Forward (+)

6127581 .. 6135829

Gene Structure 8249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG073600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1899 bp

ATGGTGGTCAGTGAATTCATTTGCGTAACGGAACGGAATCACAACGGCGTCACTCTAACCGCTCATCTCCGCCTTCACTTGTTTTCAAATCCACCAACAATGGCTTCCGCCGTCACCGAGCCTAATCTCCAGAGAAACCTCCACCTCCTCTCCGCCGAACAGGTGGAGCTGGCGAAGGTGCTGGTGGAGATGGGGCAGGCTCATCTGTTCGAGCATTGGGCCAAGCCGGGCGTCGACGATGACGAAAAGAAAGCCTTTTTTGATCAGGTGAGTCGGCTCAATTCAAGCTATCCAGGGGGTTTGGCATCATATATCAAAACTGCTAGAGAACTGTTAGCGGATTCAAAAGCCGGAAAGAATCCATTTGATGGCTTTACACCTTCCGTTCCAACAGGTGAAACCTTGACTTTTGGTGATGATAGCTTTATGAGTTTTGAGGAGACTGGTGTCAAAGAAGTTCGGAAAGCTGCATTTGTTCTTGTTGCTGGAGGACTTGGGGAACGTCTGGGATACAACGGAATTAAGGTGGCTCTTCCTAGAGAGACGACCACAGGAACAGGTTTTTTACAACATTATATTGAGACAATATTGGCTCTTCAAGATGCTAGCTGTAAACTCGCAGAAGGTGAATGCCAAACAAAAAGTCCTCTGGTTATAATGACATCAGATGACACACATTCTCGTACAGTAGAGCTTTTAGAGTCAAATTCTTATTTTGGAATGGAACCTAATCAAGTAAAGCTTTTAAAGCAGGAAAAAGTTGCATGCTTAGATGATAATGATGCGAGGCTTGCAGTAGATCCACGTAACAAGTACAGGATTCAGACCAAACCTCATGGACACGGTGATGTGCATTCACTACTCTACTCCAGTGGCCTTCTCAATGAATGGCGTGACGCTGGTTTGAGATGGGTTCTGTTCTTCCAAGATACAAATGGACTTCTGTTCAATGCAATTCCAGCGTCATTGGGTGTTAGTGCTACAAGACAGTACCATGTTAACTCCCTAGCTGTTCCGCGCAAAGCAAAAGAAGCAATTGGAGGAATTACCCGACTTACTCATGCTGATGGGAGATCAATGGTGATCAATGTGGAGTACAACCAGCTTGATCCACTGCTTAGAGCAACTGGATTTCCTGACGGTGATGTCAACTGTGAGACTGGCTATTCTCCTTTCCCTGGGAATATCAACCAATTAATCTTGGAACTTGGTCCGTACATTGAGGAGCTCACAAAAACAGGAGGTGCCATACAGGAGTTTGTTAACCCAAAATACAAAGATGCTAGTAAGACTTCATTTAAGTCCTCAACTCGGTTAGAGTGTATGATGCAAGACTATCCAAAAACTTTGCCTCCATCTGCTAGGGTGGGATTCACGGTAATGGAGCCATGGCTTGCTTATGCACCTGTTAAGAACAACCCTGAGGATGCTGCTAAGGTACCAAAGGGAAATCCATATCATAGTGCAACTTCTGGAGAAATGTTGGTTTATCGTGCAAACAGTCTCATTCTCAGAAAGGCTGGAGTCCAAGTAGCTGATCCAGTACAACGGGTGTTCAACGGTCAAGAAATTGAAGTGTGGCCTTGTGTCACATGGAAACCAAAATGGGCGGTCACTTTTAAAGAAGTAAAAAACAAAGTCAGTGGAAGTAGCTCAATTTCTCAGAGGTCTACATTGGTTATTAAGGGCCGTAATATATTTGTCAAGGATCTCTGCTTGGATGGGGCACTTGTTATCGATGTTGCTGATGATAAAGAGGTAAAAGTGGAACGTTCAATACAGAATAAAGGCTGGATCCTTGAAAATGTTGATTACAAAGATACTTCAGTACCTGAGGAACTGAGGATAAGGGGTTTCAGAATCAACAAGATTGAACAATTGGTAAAGTCTGAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009555 GO:0009987 GO:0010035 GO:0010038 GO:0010491 GO:0016740 GO:0016772 GO:0016779 GO:0017103 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0033356 GO:0034641 GO:0034654 GO:0042221 GO:0042995 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046398 GO:0046483 GO:0046686 GO:0047338 GO:0047350 GO:0048229 GO:0048856 GO:0050896 GO:0051748 GO:0052573 GO:0055086 GO:0070569 GO:0071704 GO:0090406 GO:0120025 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00053 ko00520 ko01100 ko01130 map00040 map00052 map00053 map00520 map01100 map01130

Pfam Domains

Protein Families

UDPGP

Protein Analysis

632

Amino Acids

70.03

Weight (kDa)

6.31

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGP	PF01704	146 - 305	1.1e-14	UTP--glucose-1-phosphate uridylyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52560
fragaria_vesca	FvH4_2g28000 FvH4_2g28000
malus_domestica	MD15G1133100.v1.1
prunus_persica	Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1
pyrus_communis	pycom15g12000
rosa_chinensis	RchiOBHm_Chr6g0296821
rosa_laevigata	RLG00000011655
rosa_multiflora	Rmu_sc0009497.1_g000007
rosa_roxburghii	Rroxscaffold_176G00431360 Rroxscaffold_7G00171130 Rroxscaffold_7G00203680 Rroxscaffold_7G00203690
rosa_rugosa	Rorug04G0447400 Rorug04G0447500 Rorug04G0447600 Rorug04G0447600 Rorug04G0447600 Rorug04G0447700 Rorug04G0447800 Rorug06G0266800
rosa_samantha	Rh5BG073600 Rh6BG385800 Rh6DG378100
rosa_wichuraiana	Rw6G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
AasI	GACNNNNNNGTC	1 cut(s)	1145
Acc65I	GGTACC	1 cut(s)	1438
AccB1I	GGYRCC	2 cut(s)	1244, 1438
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	2 cut(s)	234, 1670
AccII	CGCG	1 cut(s)	1018
AciI	CCGC	7 cut(s)	60, 70, 108, 153, 338, 1016, 1610
AclI	AACGTT	1 cut(s)	1771
AclWI	GGATC	6 cut(s)	794, 1103, 1532, 1716, 1789, 1802
AcsI	RAATTY	2 cut(s)	14, 706
AcuI	CTGAAG	1 cut(s)	1809
AcyI	GRCGYC	2 cut(s)	48, 231
AfaI	GTAC	8 cut(s)	685, 815, 992, 1097, 1217, 1440, 1545, 1830
AfiI	CCNNNNNNNGG	3 cut(s)	368, 1178, 1311
AjnI	CCWGG	2 cut(s)	292, 1177
AjuI	GAANNNNNNNTTGG	2 cut(s)	88, 120
Alw21I	GWGCWC	1 cut(s)	1230
Alw26I	GTCTC	5 cut(s)	434, 536, 575, 1151, 1508
AlwI	GGATC	6 cut(s)	794, 1103, 1532, 1716, 1789, 1802
AlwNI	CAGNNNCTG	1 cut(s)	1832
AoxI	GGCC	4 cut(s)	219, 874, 1580, 1687
ApeKI	GCWGC	2 cut(s)	467, 1430
ApoI	RAATTY	2 cut(s)	14, 706
ArsI	GACNNNNNNTTYG	2 cut(s)	628, 660
AseI	ATTAAT	1 cut(s)	1196
Asp718I	GGTACC	1 cut(s)	1438
AspLEI	GCGC	1 cut(s)	1020
AspS9I	GGNCC	3 cut(s)	219, 1211, 1687
AsuC2I	CCSGG	1 cut(s)	228
AsuHPI	GGTGA	8 cut(s)	106, 280, 407, 425, 638, 857, 1093, 1154
AsuNHI	GCTAGC	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	1211
AxyI	CCTNAGG	2 cut(s)	1422, 1833
BaeGI	GKGCMC	1 cut(s)	1729
BaeI	ACNNNNGTAYC	4 cut(s)	1812, 1812, 1845, 1845
BamHI	GGATCC	1 cut(s)	1794
BanI	GGYRCC	2 cut(s)	1244, 1438
BanII	GRGCYC	1 cut(s)	1230
Bbv12I	GWGCWC	1 cut(s)	1230
BbvI	GCAGC	2 cut(s)	454, 1417
BccI	CCATC	6 cut(s)	184, 362, 903, 1061, 1363, 1715
BceAI	ACGGC	3 cut(s)	61, 95, 1674
BciT130I	CCWGG	2 cut(s)	294, 1179
BciVI	GTATCC	1 cut(s)	503
BclI	TGATCA	2 cut(s)	262, 1083
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	5 cut(s)	434, 536, 575, 1151, 1508
BfaI	CTAG	6 cut(s)	324, 537, 606, 1007, 1284, 1362
BfuI	GTATCC	1 cut(s)	503
BisI	GCNGC	2 cut(s)	468, 1431
BlsI	GCNGC	2 cut(s)	469, 1432
Bme1390I	CCNGG	3 cut(s)	228, 294, 1179
Bme18I	GGWCC	1 cut(s)	1211
BmgT120I	GGNCC	3 cut(s)	219, 1211, 1687
BmiI	GGNNCC	5 cut(s)	726, 1246, 1386, 1440, 1796
BmrFI	CCNGG	3 cut(s)	228, 294, 1179
BmsI	GCATC	6 cut(s)	314, 592, 772, 1270, 1317, 1417
BmtI	GCTAGC	1 cut(s)	609
BoxI	GACNNNNGTC	1 cut(s)	446
BpmI	CTGGAG	5 cut(s)	113, 507, 853, 1494, 1542
Bpu10I	CCTNAGC	1 cut(s)	1434
BpuMI	CCSGG	1 cut(s)	228
Bsa29I	ATCGAT	1 cut(s)	1737
BsaAI	YACGTR	1 cut(s)	806
BsaHI	GRCGYC	2 cut(s)	48, 231
BsaJI	CCNNGG	4 cut(s)	293, 1177, 1178, 1388
BsaXI	ACNNNNNCTCC	6 cut(s)	134, 164, 1336, 1366, 1515, 1545
Bsc4I	CCNNNNNNNGG	3 cut(s)	368, 1178, 1311
Bse1I	ACTGG	5 cut(s)	448, 870, 1132, 1165, 1541
Bse21I	CCTNAGG	2 cut(s)	1422, 1833
BseBI	CCWGG	2 cut(s)	294, 1179
BseCI	ATCGAT	1 cut(s)	1737
BseDI	CCNNGG	4 cut(s)	293, 1177, 1178, 1388
BseGI	GGATG	2 cut(s)	1432, 1726
BseLI	CCNNNNNNNGG	3 cut(s)	368, 1178, 1311
BseMII	CTCAG	6 cut(s)	1413, 1525, 1676, 1824, 1832, 1881
BseNI	ACTGG	5 cut(s)	448, 870, 1132, 1165, 1541
BseRI	GAGGAG	3 cut(s)	137, 452, 1238
BseSI	GKGCMC	1 cut(s)	1729
BseXI	GCAGC	2 cut(s)	454, 1417
Bsh1236I	CGCG	1 cut(s)	1018
BshFI	GGCC	4 cut(s)	221, 876, 1582, 1689
BshNI	GGYRCC	2 cut(s)	1244, 1438
BshVI	ATCGAT	1 cut(s)	1737
BsiHKAI	GWGCWC	1 cut(s)	1230
BsiSI	CCGG	2 cut(s)	227, 351
BslI	CCNNNNNNNGG	3 cut(s)	368, 1178, 1311
BsmAI	GTCTC	5 cut(s)	434, 536, 575, 1151, 1508
BsmBI	CGTCTC	1 cut(s)	536
BsmI	GAATGC	2 cut(s)	635, 853
BsnI	GGCC	4 cut(s)	221, 876, 1582, 1689
Bsp1286I	GDGCHC	2 cut(s)	1230, 1729
Bsp143I	GATC	8 cut(s)	262, 799, 1073, 1083, 1108, 1537, 1708, 1794
Bsp19I	CCATGG	1 cut(s)	1388
BspACI	CCGC	7 cut(s)	60, 70, 108, 153, 338, 1016, 1610
BspANI	GGCC	4 cut(s)	221, 876, 1582, 1689
BspCNI	CTCAG	6 cut(s)	1414, 1524, 1675, 1825, 1833, 1882
BspDI	ATCGAT	1 cut(s)	1737
BspFNI	CGCG	1 cut(s)	1018
BspLI	GGNNCC	5 cut(s)	726, 1246, 1386, 1440, 1796
BspOI	GCTAGC	1 cut(s)	609
BspPI	GGATC	6 cut(s)	794, 1103, 1532, 1716, 1789, 1802
BspQI	GCTCTTC	2 cut(s)	537, 600
BspT107I	GGYRCC	2 cut(s)	1244, 1438
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	5 cut(s)	448, 870, 1132, 1165, 1541
BssECI	CCNNGG	4 cut(s)	293, 1177, 1178, 1388
BssMI	GATC	8 cut(s)	262, 799, 1073, 1083, 1108, 1537, 1708, 1794
BssNI	GRCGYC	2 cut(s)	48, 231
BssT1I	CCWWGG	1 cut(s)	1388
Bst2UI	CCWGG	2 cut(s)	294, 1179
Bst4CI	ACNGT	9 cut(s)	333, 688, 845, 990, 1142, 1154, 1378, 1502, 1562
Bst6I	CTCTTC	2 cut(s)	537, 600
BstACI	GRCGYC	2 cut(s)	48, 231
BstBAI	YACGTR	1 cut(s)	806
BstC8I	GCNNGC	6 cut(s)	171, 198, 607, 766, 792, 1395
BstDEI	CTNAG	9 cut(s)	769, 1118, 1422, 1434, 1511, 1662, 1833, 1841, 1890
BstDSI	CCRYGG	1 cut(s)	1388
BstF5I	GGATG	2 cut(s)	1432, 1726
BstFNI	CGCG	1 cut(s)	1018
BstHHI	GCGC	1 cut(s)	1020
BstKTI	GATC	8 cut(s)	265, 802, 1076, 1086, 1111, 1540, 1711, 1797
BstMAI	GTCTC	5 cut(s)	434, 536, 575, 1151, 1508
BstMBI	GATC	8 cut(s)	262, 799, 1073, 1083, 1108, 1537, 1708, 1794
BstMWI	GCNNNNNNNGC	4 cut(s)	748, 791, 959, 1031
BstNI	CCWGG	2 cut(s)	294, 1179
BstNSI	RCATGY	1 cut(s)	768
BstPAI	GACNNNNGTC	1 cut(s)	446
BstSCI	CCNGG	3 cut(s)	226, 292, 1177
BstSLI	GKGCMC	1 cut(s)	1729
BstUI	CGCG	1 cut(s)	1018
BstV1I	GCAGC	2 cut(s)	454, 1417
BstX2I	RGATCY	3 cut(s)	799, 1708, 1794
BstYI	RGATCY	3 cut(s)	799, 1708, 1794
Bsu15I	ATCGAT	1 cut(s)	1737
Bsu36I	CCTNAGG	2 cut(s)	1422, 1833
BsuI	GTATCC	1 cut(s)	503
BsuRI	GGCC	4 cut(s)	221, 876, 1582, 1689
BsuTUI	ATCGAT	1 cut(s)	1737
BtgI	CCRYGG	1 cut(s)	1388
BtsCI	GGATG	2 cut(s)	1432, 1726
BtsI	GCAGTG	1 cut(s)	1112
BtsIMutI	CAGTG	4 cut(s)	16, 877, 1112, 1648
Cac8I	GCNNGC	6 cut(s)	171, 198, 607, 766, 792, 1395
CaiI	CAGNNNCTG	1 cut(s)	1832
CfoI	GCGC	1 cut(s)	1020
Cfr13I	GGNCC	3 cut(s)	219, 1211, 1687
ClaI	ATCGAT	1 cut(s)	1737
CseI	GACGC	4 cut(s)	37, 220, 905, 951
Csp6I	GTAC	8 cut(s)	684, 814, 991, 1096, 1216, 1439, 1544, 1829
CspCI	CAANNNNNGTGG	2 cut(s)	1624, 1659
CviAII	CATG	6 cut(s)	765, 836, 995, 1061, 1389, 1593
CviQI	GTAC	8 cut(s)	684, 814, 991, 1096, 1216, 1439, 1544, 1829
DdeI	CTNAG	9 cut(s)	769, 1118, 1422, 1434, 1511, 1662, 1833, 1841, 1890
DpnI	GATC	8 cut(s)	264, 801, 1075, 1085, 1110, 1539, 1710, 1796
DpnII	GATC	8 cut(s)	262, 799, 1073, 1083, 1108, 1537, 1708, 1794
DraI	TTTAAA	2 cut(s)	747, 1621
DrdI	GACNNNNNNGTC	1 cut(s)	1145
DseDI	GACNNNNNNGTC	1 cut(s)	1145
Eam1104I	CTCTTC	2 cut(s)	537, 600
EarI	CTCTTC	2 cut(s)	537, 600
EciI	GGCGGA	3 cut(s)	59, 97, 142
Ecl136II	GAGCTC	1 cut(s)	1228
Eco130I	CCWWGG	1 cut(s)	1388
Eco24I	GRGCYC	1 cut(s)	1230
Eco47I	GGWCC	1 cut(s)	1211
Eco53kI	GAGCTC	1 cut(s)	1228
Eco57I	CTGAAG	1 cut(s)	1809
Eco81I	CCTNAGG	2 cut(s)	1422, 1833
EcoICRI	GAGCTC	1 cut(s)	1228
EcoRI	GAATTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	292, 1177
EcoT14I	CCWWGG	1 cut(s)	1388
EcoT38I	GRGCYC	1 cut(s)	1230
ErhI	CCWWGG	1 cut(s)	1388
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	6 cut(s)	768, 839, 998, 1064, 1392, 1596
FalI	AAGNNNNNCTT	4 cut(s)	239, 271, 726, 758
FatI	CATG	6 cut(s)	764, 835, 994, 1060, 1388, 1592
FbaI	TGATCA	2 cut(s)	262, 1083
FblI	GTMKAC	2 cut(s)	234, 1670
Fnu4HI	GCNGC	2 cut(s)	468, 1431
FokI	GGATG	2 cut(s)	1439, 1733
FriOI	GRGCYC	1 cut(s)	1230
Fsp4HI	GCNGC	2 cut(s)	468, 1431
FspBI	CTAG	6 cut(s)	324, 537, 606, 1007, 1284, 1362
GlaI	GCGC	1 cut(s)	1019
GluI	GCNGC	2 cut(s)	468, 1431
GsuI	CTGGAG	5 cut(s)	113, 507, 853, 1494, 1542
HaeIII	GGCC	4 cut(s)	221, 876, 1582, 1689
HapII	CCGG	2 cut(s)	227, 351
HgaI	GACGC	4 cut(s)	37, 220, 905, 951
HhaI	GCGC	1 cut(s)	1020
Hin1I	GRCGYC	2 cut(s)	48, 231
Hin1II	CATG	6 cut(s)	768, 839, 998, 1064, 1392, 1596
Hin6I	GCGC	1 cut(s)	1018
HinP1I	GCGC	1 cut(s)	1018
HincII	GTYRAC	4 cut(s)	235, 1000, 1150, 1264
HindII	GTYRAC	4 cut(s)	235, 1000, 1150, 1264
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	9 cut(s)	37, 271, 341, 358, 701, 820, 1371, 1524, 1860
HpaI	GTTAAC	2 cut(s)	1000, 1264
HpaII	CCGG	2 cut(s)	227, 351
HphI	GGTGA	8 cut(s)	106, 280, 407, 425, 638, 857, 1093, 1154
Hpy166II	GTNNAC	6 cut(s)	235, 614, 1000, 1150, 1264, 1671
Hpy188I	TCNGA	7 cut(s)	462, 667, 825, 1514, 1665, 1859, 1891
Hpy188III	TCNNGA	5 cut(s)	130, 599, 1136, 1473, 1565
Hpy8I	GTNNAC	6 cut(s)	235, 614, 1000, 1150, 1264, 1671
Hpy99I	CGWCG	2 cut(s)	236, 239
HpyAV	CCTTC	5 cut(s)	83, 169, 390, 617, 887
HpyCH4III	ACNGT	9 cut(s)	333, 688, 845, 990, 1142, 1154, 1378, 1502, 1562
HpyCH4IV	ACGT	3 cut(s)	502, 805, 1771
HpyCH4V	TGCA	9 cut(s)	470, 764, 794, 853, 953, 1330, 1403, 1466, 1496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	748, 791, 959, 1031
HpyF3I	CTNAG	9 cut(s)	769, 1118, 1422, 1434, 1511, 1662, 1833, 1841, 1890
HpySE526I	ACGT	3 cut(s)	502, 805, 1771
Hsp92I	GRCGYC	2 cut(s)	48, 231
Hsp92II	CATG	6 cut(s)	768, 839, 998, 1064, 1392, 1596
HspAI	GCGC	1 cut(s)	1018
KpnI	GGTACC	1 cut(s)	1442
Ksp22I	TGATCA	2 cut(s)	262, 1083
KspAI	GTTAAC	2 cut(s)	1000, 1264
Kzo9I	GATC	8 cut(s)	262, 799, 1073, 1083, 1108, 1537, 1708, 1794
LguI	GCTCTTC	2 cut(s)	537, 600
LmnI	GCTCC	3 cut(s)	166, 1225, 1384
Lsp1109I	GCAGC	2 cut(s)	454, 1417
LweI	GCATC	6 cut(s)	314, 592, 772, 1270, 1317, 1417
MaeI	CTAG	6 cut(s)	324, 537, 606, 1007, 1284, 1362
MaeII	ACGT	3 cut(s)	502, 805, 1771
MaeIII	GTNAC	7 cut(s)	25, 49, 112, 806, 893, 1588, 1612
MalI	GATC	8 cut(s)	264, 801, 1075, 1085, 1110, 1539, 1710, 1796
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	8 cut(s)	262, 799, 1073, 1083, 1108, 1537, 1708, 1794
MboII	GAAGA	3 cut(s)	524, 587, 913
MfeI	CAATTG	2 cut(s)	1035, 1877
MflI	RGATCY	3 cut(s)	799, 1708, 1794
MhlI	GDGCHC	2 cut(s)	1230, 1729
MlyI	GAGTC	3 cut(s)	280, 710, 1533
MmeI	TCCRAC	1 cut(s)	413
MseI	TTAA	9 cut(s)	522, 746, 999, 1196, 1263, 1299, 1410, 1620, 1683
MslI	CAYNNNNRTG	3 cut(s)	846, 1065, 1379
MspI	CCGG	2 cut(s)	227, 351
MspR9I	CCNGG	3 cut(s)	228, 294, 1179
MunI	CAATTG	2 cut(s)	1035, 1877
Mva1269I	GAATGC	2 cut(s)	635, 853
MvaI	CCWGG	2 cut(s)	294, 1179
MvnI	CGCG	1 cut(s)	1018
MwoI	GCNNNNNNNGC	4 cut(s)	748, 791, 959, 1031
NciI	CCSGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	1388
NdeII	GATC	8 cut(s)	262, 799, 1073, 1083, 1108, 1537, 1708, 1794
NheI	GCTAGC	1 cut(s)	605
NlaIII	CATG	6 cut(s)	768, 839, 998, 1064, 1392, 1596
NlaIV	GGNNCC	5 cut(s)	726, 1246, 1386, 1440, 1796
NmuCI	GTSAC	5 cut(s)	49, 112, 893, 1588, 1612
NspI	RCATGY	1 cut(s)	768
PaeI	GCATGC	1 cut(s)	768
PasI	CCCWGGG	1 cut(s)	1178
PciSI	GCTCTTC	2 cut(s)	537, 600
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PctI	GAATGC	2 cut(s)	635, 853
PfeI	GAWTC	6 cut(s)	37, 341, 358, 820, 1371, 1860
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	469, 1432
PleI	GAGTC	3 cut(s)	279, 709, 1532
PpsI	GAGTC	3 cut(s)	279, 709, 1532
Ppu21I	YACGTR	1 cut(s)	806
PshAI	GACNNNNGTC	1 cut(s)	446
PshBI	ATTAAT	1 cut(s)	1196
PsiI	TTATAA	1 cut(s)	656
Psp124BI	GAGCTC	1 cut(s)	1230
Psp1406I	AACGTT	1 cut(s)	1771
Psp6I	CCWGG	2 cut(s)	292, 1177
PspGI	CCWGG	2 cut(s)	292, 1177
PspN4I	GGNNCC	5 cut(s)	726, 1246, 1386, 1440, 1796
PspPI	GGNCC	3 cut(s)	219, 1211, 1687
PsrI	GAACNNNNNNTAC	2 cut(s)	1761, 1793
PstNI	CAGNNNCTG	1 cut(s)	1832
PsuI	RGATCY	3 cut(s)	799, 1708, 1794
RsaI	GTAC	8 cut(s)	685, 815, 992, 1097, 1217, 1440, 1545, 1830
RsaNI	GTAC	8 cut(s)	684, 814, 991, 1096, 1216, 1439, 1544, 1829
RseI	CAYNNNNRTG	3 cut(s)	846, 1065, 1379
SacI	GAGCTC	1 cut(s)	1230
SalI	GTCGAC	1 cut(s)	233
SapI	GCTCTTC	2 cut(s)	537, 600
SaqAI	TTAA	9 cut(s)	522, 746, 999, 1196, 1263, 1299, 1410, 1620, 1683
SatI	GCNGC	2 cut(s)	468, 1431
Sau3AI	GATC	8 cut(s)	262, 799, 1073, 1083, 1108, 1537, 1708, 1794
Sau96I	GGNCC	3 cut(s)	219, 1211, 1687
SchI	GAGTC	3 cut(s)	280, 710, 1533
ScrFI	CCNGG	3 cut(s)	228, 294, 1179
SduI	GDGCHC	2 cut(s)	1230, 1729
SfaNI	GCATC	6 cut(s)	314, 592, 772, 1270, 1317, 1417
SgrDI	CGTCGACG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	1211
SmiMI	CAYNNNNRTG	3 cut(s)	846, 1065, 1379
SphI	GCATGC	1 cut(s)	768
SsiI	CCGC	7 cut(s)	60, 70, 108, 153, 338, 1016, 1610
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	6 cut(s)	324, 537, 606, 1007, 1284, 1362
SstI	GAGCTC	1 cut(s)	1230
StyD4I	CCNGG	3 cut(s)	226, 292, 1177
StyI	CCWWGG	1 cut(s)	1388
TaaI	ACNGT	9 cut(s)	333, 688, 845, 990, 1142, 1154, 1378, 1502, 1562
TaiI	ACGT	3 cut(s)	505, 808, 1774
TaqI	TCGA	3 cut(s)	210, 234, 1737
TatI	WGTACW	3 cut(s)	813, 1095, 1543
TfiI	GAWTC	6 cut(s)	37, 341, 358, 820, 1371, 1860
Tru1I	TTAA	9 cut(s)	522, 746, 999, 1196, 1263, 1299, 1410, 1620, 1683
Tru9I	TTAA	9 cut(s)	522, 746, 999, 1196, 1263, 1299, 1410, 1620, 1683
TscAI	CASTG	4 cut(s)	16, 877, 1119, 1648
TseFI	GTSAC	5 cut(s)	49, 112, 893, 1588, 1612
TseI	GCWGC	2 cut(s)	467, 1430
Tsp45I	GTSAC	5 cut(s)	49, 112, 893, 1588, 1612
TspDTI	ATGAA	3 cut(s)	7, 900, 1284
TspGWI	ACGGA	5 cut(s)	44, 49, 373, 531, 1203
TspRI	CASTG	4 cut(s)	16, 877, 1119, 1648
Van91I	CCANNNNNTGG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	1211
VspI	ATTAAT	1 cut(s)	1196
XapI	RAATTY	2 cut(s)	14, 706
XceI	RCATGY	1 cut(s)	768
XcmI	CCANNNNNNNNNTGG	1 cut(s)	932
XmiI	GTMKAC	2 cut(s)	234, 1670
XspI	CTAG	6 cut(s)	324, 537, 606, 1007, 1284, 1362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.