Rroxscaffold_7G00203690

UDP-sugar

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
52579532 .. 52585422
5891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203690.1

Sequence Viewer

Length: 1485 bp
ATGACATCAGATGACACACACTCTCGCACGGCAGAGCTTTCAGAGTCCAATTCTTATTTTGGAATGGAACCTAATCAAGTGAAGCTTCTAAAGCAGGAAAAAGTTGCATGCTTAGATGATAATGATGTGAGGCTTGCAGTAGACCCACATAATAAGTACAGGATTCAGACCAAACCTCATGGGCATGGCGATGTGCATTCACTACTCTACTCTAGTGGTCTCCTCAGTGAATGGCATGATGCTGATGACACACACTCTCGCACGGCAGAGCTTTCAGAGTCCAATTCTTATTTTGGAATGGAACCTAATCAAGTGAAGCTTCTAAAGCAGGAAAAAGTTGCATGCTTAGATGATAATGATGTGAGGCTTGCAGTAGACCCACATAATAAGTACAGGATTCAGACCAAACCTCATGGGCATGGCGATGTGCATTCACTACTCTACTCTAGTGGTCTCCTCAGTGAATGGCATGATGCTGGTATGAGATGGGTTCTATTCTTCCAAGATACAAATGGACTTCTGTTCAATGAAATTCCAGCGTCATTGGGTGTTAGTGCTACAAGACACTACCATGTTAACTCCCAAGCTTTTCCACGCAAAGCAAAAGAAGCAATTGGAGGAATTACCCGACTTACTCATGCTGATGGGAGGTCAATGGTGATCAATGTGGAGTACAACCAGCTTGATTCACTTCTTAGAGCAACTGGATTTCCTGACGGTGATGTCAATTGTGAGACCGGTTATTCTCCTTTCCCTGGGAATATCAACCAATTAATCTCGGAACTTGGTCCATATATTGAGGAGCTCACAAAAACAGGAGGTGCCATAAAGGAGTTTGTTAACCCAAAATACAAAGATGCTAGTAAGACTTCATTTAAGTCCTCAACTCGGTTAGAGTGTATGATGCAAGACTACCCAAAAACTTTGCCTCCATCTGCTAGGGTGGGATTCACGGTAATGGAACCATGGTTTGCTTATGCACCTATGAAGAACAACCCTGAGGATGCTGCTCAGGCTGGAGTCCAATTAGCTGATCCAGCACAACAGGTGTTCAACAGTCAAGAAATTGAAGTGTGGCCTCGTATCACATGGAAACCAAAATGGGCCGTCACTTTTAAAGAAGTTAAAAACAAAGATCTCTCCTTGGATGGGGCTCTTATTATCGATGTTGCTGGTGATAAAGGGGTAATAGTGGAAGGTTCAGTACAGAACAAGGGCTGGATCCTTGAAAATGTTGATTACAAAGATACCTCAGTACCTGAGGAACTGAGGATAAGGGGTTTCAGAATCAACAAGATTGGACAGCTGTGGGCAGTAAGCTACTTGGGGGAGTTACAAGCAGCTTTCTATAAGCCTACTGTGAAGATGAAGAGAGTGGTGTCTATGTGGGAGTGCCCACCGGGTGCCTTTCGTGGAGGTGATGGTGACGAGGTGGAATTGGGGTGGTGGCTAGGAATGATCAAGGTGCGGGAATCATGGCTTTAG

Protein Analysis

494

Amino Acids

55.51

Weight (kDa)

5.72

Isoelectric Point (pI)

37.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 722
AccB1I GGYRCC 2 cut(s) 821, 1403
AccI GTMKAC 2 cut(s) 141, 375
AciI CCGC 1 cut(s) 1468
AclWI GGATC 3 cut(s) 1028, 1216, 1229
AcsI RAATTY 1 cut(s) 531
AdeI CACNNNGTG 1 cut(s) 1403
AfaI GTAC 5 cut(s) 158, 392, 674, 1206, 1257
AfiI CCNNNNNNNGG 3 cut(s) 755, 888, 1149
AgeI ACCGGT 1 cut(s) 737
AgsI TTSAA 4 cut(s) 526, 1054, 1070, 1229
AjnI CCWGG 1 cut(s) 754
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 3 cut(s) 224, 458, 728
AlwI GGATC 3 cut(s) 1028, 1216, 1229
AlwNI CAGNNNCTG 1 cut(s) 1259
AoxI GGCC 2 cut(s) 1076, 1104
ApeKI GCWGC 2 cut(s) 1007, 1340
ApoI RAATTY 1 cut(s) 531
AseI ATTAAT 1 cut(s) 773
AsiGI ACCGGT 1 cut(s) 737
AspS9I GGNCC 2 cut(s) 788, 1104
AsuC2I CCSGG 1 cut(s) 1401
AsuHPI GGTGA 5 cut(s) 670, 731, 1187, 1430, 1436
AvaII GGWCC 1 cut(s) 788
AxyI CCTNAGG 2 cut(s) 999, 1260
BaeGI GKGCMC 1 cut(s) 1397
BaeI ACNNNNGTAYC 4 cut(s) 1239, 1239, 1272, 1272
BamHI GGATCC 1 cut(s) 1221
BanI GGYRCC 2 cut(s) 821, 1403
BanII GRGCYC 2 cut(s) 807, 1156
BarI GAAGNNNNNNTAC 2 cut(s) 1188, 1220
Bbv12I GWGCWC 1 cut(s) 807
BbvI GCAGC 2 cut(s) 994, 1352
BccI CCATC 5 cut(s) 480, 638, 940, 1142, 1415
BceAI ACGGC 3 cut(s) 45, 279, 1091
BciT130I CCWGG 1 cut(s) 756
BclI TGATCA 2 cut(s) 660, 1458
BcnI CCSGG 1 cut(s) 1401
BcoDI GTCTC 3 cut(s) 224, 458, 728
BfaI CTAG 5 cut(s) 213, 447, 861, 939, 1451
BglII AGATCT 1 cut(s) 1135
BisI GCNGC 2 cut(s) 1008, 1341
BlsI GCNGC 2 cut(s) 1009, 1342
Bme1390I CCNGG 2 cut(s) 756, 1401
Bme18I GGWCC 1 cut(s) 788
BmgT120I GGNCC 2 cut(s) 788, 1104
BmiI GGNNCC 6 cut(s) 69, 303, 823, 963, 1223, 1405
BmrFI CCNGG 2 cut(s) 756, 1401
BmsI GCATC 5 cut(s) 229, 463, 847, 894, 994
BpmI CTGGAG 1 cut(s) 1038
Bpu10I CCTNAGC 1 cut(s) 1011
BpuMI CCSGG 1 cut(s) 1401
Bsa29I ATCGAT 1 cut(s) 1164
BsaI GGTCTC 3 cut(s) 224, 458, 728
BsaJI CCNNGG 4 cut(s) 754, 755, 965, 1143
BsaWI WCCGGW 1 cut(s) 737
BsaXI ACNNNNNCTCC 2 cut(s) 913, 943
Bsc4I CCNNNNNNNGG 3 cut(s) 755, 888, 1149
Bse118I RCCGGY 1 cut(s) 737
Bse1I ACTGG 1 cut(s) 709
Bse21I CCTNAGG 2 cut(s) 999, 1260
BseBI CCWGG 1 cut(s) 756
BseCI ATCGAT 1 cut(s) 1164
BseDI CCNNGG 4 cut(s) 754, 755, 965, 1143
BseGI GGATG 2 cut(s) 1009, 1153
BseLI CCNNNNNNNGG 3 cut(s) 755, 888, 1149
BseMII CTCAG 7 cut(s) 238, 472, 990, 1025, 1251, 1259, 1266
BseNI ACTGG 1 cut(s) 709
BseRI GAGGAG 3 cut(s) 212, 446, 815
BseSI GKGCMC 1 cut(s) 1397
BseXI GCAGC 2 cut(s) 994, 1352
BshFI GGCC 2 cut(s) 1078, 1106
BshNI GGYRCC 2 cut(s) 821, 1403
BshTI ACCGGT 1 cut(s) 737
BshVI ATCGAT 1 cut(s) 1164
BsiHKAI GWGCWC 1 cut(s) 807
BsiSI CCGG 2 cut(s) 738, 1400
BslI CCNNNNNNNGG 3 cut(s) 755, 888, 1149
BsmAI GTCTC 3 cut(s) 224, 458, 728
BsmI GAATGC 2 cut(s) 196, 430
BsnI GGCC 2 cut(s) 1078, 1106
Bso31I GGTCTC 3 cut(s) 224, 458, 728
Bsp1286I GDGCHC 3 cut(s) 807, 1156, 1397
Bsp143I GATC 5 cut(s) 660, 1033, 1135, 1221, 1458
Bsp19I CCATGG 1 cut(s) 965
BspACI CCGC 1 cut(s) 1468
BspANI GGCC 2 cut(s) 1078, 1106
BspCNI CTCAG 7 cut(s) 237, 471, 991, 1024, 1252, 1260, 1265
BspDI ATCGAT 1 cut(s) 1164
BspLI GGNNCC 6 cut(s) 69, 303, 823, 963, 1223, 1405
BspPI GGATC 3 cut(s) 1028, 1216, 1229
BspT107I GGYRCC 2 cut(s) 821, 1403
BspTNI GGTCTC 3 cut(s) 224, 458, 728
BsrFI RCCGGY 1 cut(s) 737
BsrI ACTGG 1 cut(s) 709
BssAI RCCGGY 1 cut(s) 737
BssECI CCNNGG 4 cut(s) 754, 755, 965, 1143
BssMI GATC 5 cut(s) 660, 1033, 1135, 1221, 1458
BssT1I CCWWGG 2 cut(s) 965, 1143
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 4 cut(s) 719, 955, 1058, 1360
Bst6I CTCTTC 1 cut(s) 1364
BstC8I GCNNGC 4 cut(s) 109, 135, 343, 369
BstDSI CCRYGG 1 cut(s) 965
BstF5I GGATG 2 cut(s) 1009, 1153
BstKTI GATC 5 cut(s) 663, 1036, 1138, 1224, 1461
BstMAI GTCTC 3 cut(s) 224, 458, 728
BstMBI GATC 5 cut(s) 660, 1033, 1135, 1221, 1458
BstMWI GCNNNNNNNGC 5 cut(s) 91, 325, 608, 1013, 1037
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 2 cut(s) 111, 345
BstSCI CCNGG 2 cut(s) 754, 1399
BstSLI GKGCMC 1 cut(s) 1397
BstV1I GCAGC 2 cut(s) 994, 1352
BstX2I RGATCY 2 cut(s) 1135, 1221
BstYI RGATCY 2 cut(s) 1135, 1221
Bsu15I ATCGAT 1 cut(s) 1164
Bsu36I CCTNAGG 2 cut(s) 999, 1260
BsuRI GGCC 2 cut(s) 1078, 1106
BsuTUI ATCGAT 1 cut(s) 1164
BtgI CCRYGG 1 cut(s) 965
BtgZI GCGATG 2 cut(s) 204, 438
BtsCI GGATG 2 cut(s) 1009, 1153
BtsIMutI CAGTG 2 cut(s) 232, 466
Cac8I GCNNGC 4 cut(s) 109, 135, 343, 369
CaiI CAGNNNCTG 1 cut(s) 1259
Cfr10I RCCGGY 1 cut(s) 737
Cfr13I GGNCC 2 cut(s) 788, 1104
ClaI ATCGAT 1 cut(s) 1164
CseI GACGC 1 cut(s) 528
Csp6I GTAC 5 cut(s) 157, 391, 673, 1205, 1256
CspAI ACCGGT 1 cut(s) 737
CviQI GTAC 5 cut(s) 157, 391, 673, 1205, 1256
DpnI GATC 5 cut(s) 662, 1035, 1137, 1223, 1460
DpnII GATC 5 cut(s) 660, 1033, 1135, 1221, 1458
DraI TTTAAA 1 cut(s) 1117
DraIII CACNNNGTG 1 cut(s) 1403
DrdI GACNNNNNNGTC 1 cut(s) 722
DseDI GACNNNNNNGTC 1 cut(s) 722
Eam1104I CTCTTC 1 cut(s) 1364
EarI CTCTTC 1 cut(s) 1364
Ecl136II GAGCTC 1 cut(s) 805
Eco130I CCWWGG 2 cut(s) 965, 1143
Eco24I GRGCYC 2 cut(s) 807, 1156
Eco31I GGTCTC 3 cut(s) 224, 458, 728
Eco47I GGWCC 1 cut(s) 788
Eco53kI GAGCTC 1 cut(s) 805
Eco81I CCTNAGG 2 cut(s) 999, 1260
EcoICRI GAGCTC 1 cut(s) 805
EcoRII CCWGG 1 cut(s) 754
EcoT14I CCWWGG 2 cut(s) 965, 1143
EcoT38I GRGCYC 2 cut(s) 807, 1156
ErhI CCWWGG 2 cut(s) 965, 1143
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 303, 335
FauI CCCGC 1 cut(s) 1461
FbaI TGATCA 2 cut(s) 660, 1458
FblI GTMKAC 2 cut(s) 141, 375
Fnu4HI GCNGC 2 cut(s) 1008, 1341
FokI GGATG 2 cut(s) 1016, 1160
FriOI GRGCYC 2 cut(s) 807, 1156
Fsp4HI GCNGC 2 cut(s) 1008, 1341
FspBI CTAG 5 cut(s) 213, 447, 861, 939, 1451
GluI GCNGC 2 cut(s) 1008, 1341
GsuI CTGGAG 1 cut(s) 1038
HaeIII GGCC 2 cut(s) 1078, 1106
HapII CCGG 2 cut(s) 738, 1400
HgaI GACGC 1 cut(s) 528
HincII GTYRAC 2 cut(s) 577, 841
HindII GTYRAC 2 cut(s) 577, 841
HindIII AAGCTT 3 cut(s) 83, 317, 585
HinfI GANTC 9 cut(s) 44, 163, 278, 397, 686, 948, 1020, 1287, 1472
HpaI GTTAAC 2 cut(s) 577, 841
HpaII CCGG 2 cut(s) 738, 1400
HphI GGTGA 5 cut(s) 670, 731, 1187, 1430, 1436
Hpy166II GTNNAC 4 cut(s) 142, 376, 577, 841
Hpy188I TCNGA 7 cut(s) 10, 43, 168, 277, 402, 781, 1286
Hpy188III TCNNGA 2 cut(s) 713, 1061
Hpy8I GTNNAC 4 cut(s) 142, 376, 577, 841
HpyAV CCTTC 1 cut(s) 1190
HpyCH4III ACNGT 4 cut(s) 719, 955, 1058, 1360
HpyCH4V TGCA 8 cut(s) 107, 137, 196, 341, 371, 430, 907, 980
HpyF10VI GCNNNNNNNGC 5 cut(s) 91, 325, 608, 1013, 1037
Ksp22I TGATCA 2 cut(s) 660, 1458
KspAI GTTAAC 2 cut(s) 577, 841
Kzo9I GATC 5 cut(s) 660, 1033, 1135, 1221, 1458
LmnI GCTCC 1 cut(s) 802
Lsp1109I GCAGC 2 cut(s) 994, 1352
LweI GCATC 5 cut(s) 229, 463, 847, 894, 994
MaeI CTAG 5 cut(s) 213, 447, 861, 939, 1451
MaeIII GTNAC 3 cut(s) 1108, 1332, 1424
MalI GATC 5 cut(s) 662, 1035, 1137, 1223, 1460
MboI GATC 5 cut(s) 660, 1033, 1135, 1221, 1458
MboII GAAGA 4 cut(s) 490, 1000, 1375, 1381
MfeI CAATTG 2 cut(s) 612, 727
MflI RGATCY 2 cut(s) 1135, 1221
MhlI GDGCHC 3 cut(s) 807, 1156, 1397
MlyI GAGTC 3 cut(s) 53, 287, 1029
MseI TTAA 6 cut(s) 576, 773, 840, 876, 1116, 1125
MslI CAYNNNNRTG 7 cut(s) 183, 189, 417, 423, 570, 642, 956
MspA1I CMGCKG 1 cut(s) 1306
MspI CCGG 2 cut(s) 738, 1400
MspR9I CCNGG 2 cut(s) 756, 1401
MunI CAATTG 2 cut(s) 612, 727
Mva1269I GAATGC 2 cut(s) 196, 430
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 5 cut(s) 91, 325, 608, 1013, 1037
NciI CCSGG 1 cut(s) 1401
NcoI CCATGG 1 cut(s) 965
NdeII GATC 5 cut(s) 660, 1033, 1135, 1221, 1458
NlaIV GGNNCC 6 cut(s) 69, 303, 823, 963, 1223, 1405
NmuCI GTSAC 2 cut(s) 1108, 1424
NspI RCATGY 2 cut(s) 111, 345
PaeI GCATGC 2 cut(s) 111, 345
PasI CCCWGGG 1 cut(s) 755
PctI GAATGC 2 cut(s) 196, 430
PfeI GAWTC 6 cut(s) 163, 397, 686, 948, 1287, 1472
PinAI ACCGGT 1 cut(s) 737
PkrI GCNGC 2 cut(s) 1009, 1342
PleI GAGTC 3 cut(s) 52, 286, 1028
PpsI GAGTC 3 cut(s) 52, 286, 1028
PshBI ATTAAT 1 cut(s) 773
Psp124BI GAGCTC 1 cut(s) 807
Psp6I CCWGG 1 cut(s) 754
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 6 cut(s) 69, 303, 823, 963, 1223, 1405
PspPI GGNCC 2 cut(s) 788, 1104
PstNI CAGNNNCTG 1 cut(s) 1259
PsuI RGATCY 2 cut(s) 1135, 1221
PvuII CAGCTG 1 cut(s) 1306
RsaI GTAC 5 cut(s) 158, 392, 674, 1206, 1257
RsaNI GTAC 5 cut(s) 157, 391, 673, 1205, 1256
RseI CAYNNNNRTG 7 cut(s) 183, 189, 417, 423, 570, 642, 956
SacI GAGCTC 1 cut(s) 807
SaqAI TTAA 6 cut(s) 576, 773, 840, 876, 1116, 1125
SatI GCNGC 2 cut(s) 1008, 1341
Sau3AI GATC 5 cut(s) 660, 1033, 1135, 1221, 1458
Sau96I GGNCC 2 cut(s) 788, 1104
SchI GAGTC 3 cut(s) 53, 287, 1029
ScrFI CCNGG 2 cut(s) 756, 1401
SduI GDGCHC 3 cut(s) 807, 1156, 1397
SfaNI GCATC 5 cut(s) 229, 463, 847, 894, 994
SinI GGWCC 1 cut(s) 788
SmiMI CAYNNNNRTG 7 cut(s) 183, 189, 417, 423, 570, 642, 956
SphI GCATGC 2 cut(s) 111, 345
SsiI CCGC 1 cut(s) 1468
SspMI CTAG 5 cut(s) 213, 447, 861, 939, 1451
SstI GAGCTC 1 cut(s) 807
StyD4I CCNGG 2 cut(s) 754, 1399
StyI CCWWGG 2 cut(s) 965, 1143
TaaI ACNGT 4 cut(s) 719, 955, 1058, 1360
TaqI TCGA 1 cut(s) 1164
TatI WGTACW 4 cut(s) 156, 390, 672, 1204
TfiI GAWTC 6 cut(s) 163, 397, 686, 948, 1287, 1472
Tru1I TTAA 6 cut(s) 576, 773, 840, 876, 1116, 1125
Tru9I TTAA 6 cut(s) 576, 773, 840, 876, 1116, 1125
TscAI CASTG 2 cut(s) 232, 466
TseFI GTSAC 2 cut(s) 1108, 1424
TseI GCWGC 2 cut(s) 1007, 1340
Tsp45I GTSAC 2 cut(s) 1108, 1424
TspDTI ATGAA 4 cut(s) 543, 861, 1001, 1382
TspRI CASTG 2 cut(s) 232, 466
VpaK11BI GGWCC 1 cut(s) 788
VspI ATTAAT 1 cut(s) 773
XapI RAATTY 1 cut(s) 531
XceI RCATGY 2 cut(s) 111, 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
XmiI GTMKAC 2 cut(s) 141, 375
XspI CTAG 5 cut(s) 213, 447, 861, 939, 1451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.