Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005321

Physical Location & Seq

Genomic Coordinates Reverse (-)

60350490 .. 60350750

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0447800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGTAAGAGAAAGTCGAGAGCAAAGCCAGTTGCGATCAAGAAGCGAGTTCAGAAGCTTGACACTGTTTACACCTGCCCCTTCTGCAGCCACGGACAAAGCGTTGAGTGCGAAATCGACACCAAGGTAATGGAGGGCCGGGTCAGGTGCTTCATTTGCAAAGAGAGTTGCGCTACGAAAATCACAACTTTGACTGAAGCCATAGACATCTACAGCGAATGGATAGATGAATGCATAAGGGTCAACCAGAGCGACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009225 GO:0009226 GO:0009555 GO:0009987 GO:0010035 GO:0010038 GO:0010491 GO:0016740 GO:0016772 GO:0016779 GO:0017103 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0033356 GO:0034641 GO:0034654 GO:0042221 GO:0042995 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046398 GO:0046483 GO:0046686 GO:0047338 GO:0047350 GO:0048229 GO:0048856 GO:0050896 GO:0051748 GO:0052573 GO:0055086 GO:0070569 GO:0071704 GO:0090406 GO:0120025 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00040 ko00052 ko00053 ko00520 ko01100 ko01130 map00040 map00052 map00053 map00520 map01100 map01130

Pfam Domains

Protein Families

UDPGP

Protein Analysis

86

Amino Acids

9.81

Weight (kDa)

8.5

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Elf1	PF05129	2 - 78	3.4e-27	Transcription elongation factor Elf1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52560
fragaria_vesca	FvH4_2g28000 FvH4_2g28000
malus_domestica	MD15G1133100.v1.1
prunus_persica	Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1 Prupe.1G488700_v2.0.a1
pyrus_communis	pycom15g12000
rosa_chinensis	RchiOBHm_Chr6g0296821
rosa_laevigata	RLG00000011655
rosa_multiflora	Rmu_sc0009497.1_g000007
rosa_roxburghii	Rroxscaffold_176G00431360 Rroxscaffold_7G00171130 Rroxscaffold_7G00203680 Rroxscaffold_7G00203690
rosa_rugosa	Rorug04G0447400 Rorug04G0447500 Rorug04G0447600 Rorug04G0447600 Rorug04G0447600 Rorug04G0447700 Rorug04G0447800 Rorug06G0266800
rosa_samantha	Rh5BG073600 Rh6BG385800 Rh6DG378100
rosa_wichuraiana	Rw6G033000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	140
BfmI	CTRYAG	2 cut(s)	85, 211
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	91, 123
Bse1I	ACTGG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	91, 123
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	99
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	36
BspANI	GGCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	89
BspMI	ACCTGC	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	91, 123
BssMI	GATC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	67
BstDSI	CCRYGG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	39
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	84, 108, 156
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	2 cut(s)	85, 211
BstV1I	GCAGC	1 cut(s)	99
BstXI	CCANNNNNNTGG	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	83
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	136
CviJI	RGCY	5 cut(s)	28, 58, 90, 138, 200
CviKI_1	RGCY	5 cut(s)	28, 58, 90, 138, 200
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	123
FaiI	YATR	3 cut(s)	203, 236, 259
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	139
HhaI	GCGC	1 cut(s)	173
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	1 cut(s)	254
HpaII	CCGG	1 cut(s)	139
Hpy166II	GTNNAC	2 cut(s)	70, 244
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	2 cut(s)	18, 40
Hpy8I	GTNNAC	2 cut(s)	70, 244
HpyAV	CCTTC	1 cut(s)	91
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	87, 159, 234
HpyF10VI	GCNNNNNNNGC	3 cut(s)	84, 108, 156
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	36
LpnPI	CCDG	4 cut(s)	42, 88, 130, 152
Lsp1109I	GCAGC	1 cut(s)	99
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	1 cut(s)	127
Mph1103I	ATGCAT	1 cut(s)	236
MspI	CCGG	1 cut(s)	139
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	236
MwoI	GCNNNNNNNGC	3 cut(s)	84, 108, 156
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	36
NsiI	ATGCAT	1 cut(s)	236
PaqCI	CACCTGC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PspPI	GGNCC	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	89
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	140
SetI	ASST	4 cut(s)	60, 77, 129, 149
SfcI	CTRYAG	2 cut(s)	85, 211
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	2 cut(s)	17, 117
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	87
TspDTI	ATGAA	2 cut(s)	142, 243
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.