Rorug04G0447600

UDP-sugar

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
60329635 .. 60332728
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0447600.1

Sequence Viewer

Length: 1569 bp
ATGGCAGCTGCTGACCAATGCCGACTCGACAAAACTGGAAATTGTGTTGCCATCTCTTCCTCTACACAACCAAACTGGTGGAATCATGATCACCTCCATGCAGCAGCTGCAGCTGCCGCTGCCGGCTCTCATCTCTCGGCTTCTTCGTGGCCGTGGCACCAGCAGCAGCAGCAGCCAAACCCTAACTCCAACTCTTCTTGCGATGAGGATGTTTCAATGTCCAGTACTTCCTTTACCAATGCCTCCAACCACTCCAGCCTCAGCGTTGATTCCTCTCGCAGACTCGTTGATCAGCGTTCTGCTTCGCCCAACGACTACTTGAATAATATTGGAGAACAGGTTTCTGATAATCAAATATGGAGACAAGTTCTATTCGTCGGAAACAATGATTTGAACAGCAGTATGACTCATGATGTAGGAGAGAACTTCCTTGATGCACTATCATCCAAGAACTTGTCAAATACTGCTATGTACGAACCTGCTTGTGATTACTTGAAGAAATTGGACAACGCTAGTAGCAATTGGGAGTTCACTAACTCATCATCAGCTGCAGCTACTATGCATGCATCTAATCTCAACAATTTCGAAAGGCAAATCAACATTAATGGATCGTTTAGCAGCGAGAACTTGTCTAATCTAGTCAGCACCTGGTCCATTGCGCCACCTGAACCACAAGTAGCCAACAGCCCTTTCTTCAATCTTCCTCAAGTGTCATGTTACGGTGCTAATAATAATTTGATGAAAGTTGAAAGTGCAGCACAATTAGCTGGAGCAAACTTGCATGGAAGGCCATTTAGTTCTGATAATGGGAGCAATATTGACTTGATTGGCCTCAACAACACAATGGCTGCAGATGATAGCTACTATGGATCCGGAAATGGTTTAGTGATGCCCGATTCGTACTCTTCATCCAACAGTGCTAGAAATTTCACAGATGTCATATCTTTTAACAGTCGATTAGGCAAGCCGTTGATGGATCATAGTCACCATGCACAAAAGCCGAGTAACTTCAAATCTTTGATCAACTTATCTGATAACACTTCAAAGAAGCAAGGCCTCCAAACTTCTTCGCCGTCAAGAATGAGTGGAAGAGGACAAGGAACTGCAAATGAATCCACAGGGAAGAAGAAACGAACAGATGAGAGTAGTACATCATCAGAAATAGTTTTGAAAAAGCCTAAGCAAGAAACTTCAGCAGTTAATTCATCATCATCTGTAAAGATGCAGGCACCAAAAGTCAAGGTTGCTGATAAGATCACGGCCCTTCAACAAATCGTGTCTCCATTTGGAAAGACTGATACAGCTTCAGTACTATATGAAGCGATTCAGTACATTAAGTTCCTCCAAGACCAAGTGCAGGTGCTATTGAGTAGCCCTTATTTGAAGACAAATCCGCATAAGGATCCATGGGGAAAATTGGATCAAATTAGGGGAGATCATCACCCAAAGGTGGATCTGAAGAGCAGAGGCCTATGCTTGGTGCCTACGTCATGTACGCCCCCGGTTTATCGTGAAAATACAGGATCAGACTACTGGACACCAACATACAGAGGCTGTTTGTATAGATAA

Protein Analysis

522

Amino Acids

56.88

Weight (kDa)

6.73

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1348
Acc36I ACCTGC 2 cut(s) 487, 1348
AccB1I GGYRCC 3 cut(s) 156, 1228, 1480
AccIII TCCGGA 1 cut(s) 872
AciI CCGC 2 cut(s) 117, 1394
AclWI GGATC 9 cut(s) 616, 864, 877, 984, 1397, 1410, 1428, 1461, 1531
AcoI YGGCCR 1 cut(s) 149
AcsI RAATTY 1 cut(s) 925
AcuI CTGAAG 3 cut(s) 1176, 1290, 1478
AfaI GTAC 7 cut(s) 226, 473, 902, 1150, 1311, 1331, 1495
AfiI CCNNNNNNNGG 3 cut(s) 1357, 1450, 1477
AjnI CCWGG 1 cut(s) 647
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
AluBI AGCT 8 cut(s) 8, 107, 113, 548, 554, 767, 861, 1304
AluI AGCT 8 cut(s) 8, 107, 113, 548, 554, 767, 861, 1304
Alw26I GTCTC 2 cut(s) 355, 1284
AlwI GGATC 9 cut(s) 616, 864, 877, 984, 1397, 1410, 1428, 1461, 1531
AlwNI CAGNNNCTG 4 cut(s) 11, 107, 648, 1554
Aor13HI TCCGGA 1 cut(s) 872
AoxI GGCC 6 cut(s) 149, 788, 829, 1054, 1260, 1468
ApoI RAATTY 1 cut(s) 925
AseI ATTAAT 1 cut(s) 603
Asp700I GAANNNNTTC 1 cut(s) 1323
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 2 cut(s) 651, 1261
AsuC2I CCSGG 1 cut(s) 1502
AsuHPI GGTGA 3 cut(s) 83, 977, 1433
AsuII TTCGAA 1 cut(s) 585
AvaII GGWCC 1 cut(s) 651
BamHI GGATCC 2 cut(s) 869, 1402
BanI GGYRCC 3 cut(s) 156, 1228, 1480
BbsI GAAGAC 1 cut(s) 1391
BbvCI CCTCAGC 1 cut(s) 260
BccI CCATC 2 cut(s) 59, 967
BceAI ACGGC 4 cut(s) 136, 952, 1057, 1275
BciT130I CCWGG 1 cut(s) 649
BclI TGATCA 3 cut(s) 88, 289, 1020
BcnI CCSGG 1 cut(s) 1502
BcoDI GTCTC 2 cut(s) 355, 1284
BfaI CTAG 3 cut(s) 513, 638, 921
BfmI CTRYAG 3 cut(s) 108, 549, 849
BfuAI ACCTGC 2 cut(s) 487, 1348
BmcAI AGTACT 2 cut(s) 226, 1311
Bme1390I CCNGG 2 cut(s) 649, 1502
Bme18I GGWCC 1 cut(s) 651
BmgT120I GGNCC 2 cut(s) 651, 1261
BmiI GGNNCC 5 cut(s) 158, 871, 1230, 1404, 1482
BmrFI CCNGG 2 cut(s) 649, 1502
BmsI GCATC 4 cut(s) 424, 575, 879, 1212
BpiI GAAGAC 1 cut(s) 1391
BpmI CTGGAG 2 cut(s) 238, 789
Bpu10I CCTNAGC 2 cut(s) 260, 1179
Bpu14I TTCGAA 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 690
BpuMI CCSGG 1 cut(s) 1502
BsaJI CCNNGG 3 cut(s) 152, 1406, 1500
BsaWI WCCGGW 1 cut(s) 872
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 324, 354
Bsc4I CCNNNNNNNGG 3 cut(s) 1357, 1450, 1477
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 4 cut(s) 40, 80, 222, 1538
Bse3DI GCAATG 1 cut(s) 654
BseAI TCCGGA 1 cut(s) 872
BseBI CCWGG 1 cut(s) 649
BseDI CCNNGG 3 cut(s) 152, 1406, 1500
BseGI GGATG 3 cut(s) 214, 443, 908
BseLI CCNNNNNNNGG 3 cut(s) 1357, 1450, 1477
BseMI GCAATG 1 cut(s) 654
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 4 cut(s) 40, 80, 222, 1538
BsgI GTGCAG 2 cut(s) 774, 1376
BshFI GGCC 6 cut(s) 151, 790, 831, 1056, 1262, 1470
BshNI GGYRCC 3 cut(s) 156, 1228, 1480
BsiSI CCGG 3 cut(s) 123, 873, 1502
BslI CCNNNNNNNGG 3 cut(s) 1357, 1450, 1477
BsmAI GTCTC 2 cut(s) 355, 1284
BsnI GGCC 6 cut(s) 151, 790, 831, 1056, 1262, 1470
Bsp119I TTCGAA 1 cut(s) 585
Bsp13I TCCGGA 1 cut(s) 872
Bsp19I CCATGG 1 cut(s) 1406
BspACI CCGC 2 cut(s) 117, 1394
BspANI GGCC 6 cut(s) 151, 790, 831, 1056, 1262, 1470
BspCNI CTCAG 1 cut(s) 273
BspEI TCCGGA 1 cut(s) 872
BspHI TCATGA 2 cut(s) 85, 409
BspLI GGNNCC 5 cut(s) 158, 871, 1230, 1404, 1482
BspMAI CTGCAG 3 cut(s) 112, 553, 853
BspMI ACCTGC 2 cut(s) 487, 1348
BspPI GGATC 9 cut(s) 616, 864, 877, 984, 1397, 1410, 1428, 1461, 1531
BspQI GCTCTTC 1 cut(s) 1454
BspT104I TTCGAA 1 cut(s) 585
BspT107I GGYRCC 3 cut(s) 156, 1228, 1480
BsrDI GCAATG 1 cut(s) 654
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 4 cut(s) 40, 80, 222, 1538
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 152, 1406, 1500
BssT1I CCWWGG 1 cut(s) 1406
Bst2UI CCWGG 1 cut(s) 649
Bst4CI ACNGT 3 cut(s) 722, 917, 953
Bst6I CTCTTC 5 cut(s) 61, 199, 910, 1084, 1454
BstAPI GCANNNNNTGC 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 4 cut(s) 124, 564, 965, 1227
BstDEI CTNAG 2 cut(s) 260, 1179
BstDSI CCRYGG 2 cut(s) 152, 1406
BstF5I GGATG 3 cut(s) 214, 443, 908
BstHHI GCGC 1 cut(s) 661
BstMAI GTCTC 2 cut(s) 355, 1284
BstNI CCWGG 1 cut(s) 649
BstNSI RCATGY 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 647, 1500
BstSFI CTRYAG 3 cut(s) 108, 549, 849
BstV2I GAAGAC 1 cut(s) 1391
BstX2I RGATCY 3 cut(s) 869, 1402, 1453
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 3 cut(s) 869, 1402, 1453
BsuRI GGCC 6 cut(s) 151, 790, 831, 1056, 1262, 1470
BtgI CCRYGG 2 cut(s) 152, 1406
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 3 cut(s) 214, 443, 908
BtsIMutI CAGTG 1 cut(s) 922
BveI ACCTGC 2 cut(s) 487, 1348
Cac8I GCNNGC 4 cut(s) 124, 564, 965, 1227
CaiI CAGNNNCTG 4 cut(s) 11, 107, 648, 1554
CciI TCATGA 2 cut(s) 85, 409
CfoI GCGC 1 cut(s) 661
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 2 cut(s) 651, 1261
CsiI ACCWGGT 1 cut(s) 647
Csp6I GTAC 7 cut(s) 225, 472, 901, 1149, 1310, 1330, 1494
CviAII CATG 9 cut(s) 86, 98, 410, 563, 714, 782, 989, 1407, 1491
CviQI GTAC 7 cut(s) 225, 472, 901, 1149, 1310, 1330, 1494
DdeI CTNAG 2 cut(s) 260, 1179
EaeI YGGCCR 1 cut(s) 149
Eam1104I CTCTTC 5 cut(s) 61, 199, 910, 1084, 1454
EarI CTCTTC 5 cut(s) 61, 199, 910, 1084, 1454
Eco130I CCWWGG 1 cut(s) 1406
Eco147I AGGCCT 2 cut(s) 1056, 1470
Eco47I GGWCC 1 cut(s) 651
Eco57I CTGAAG 3 cut(s) 1176, 1290, 1478
EcoRII CCWGG 1 cut(s) 647
EcoT14I CCWWGG 1 cut(s) 1406
EcoT22I ATGCAT 2 cut(s) 564, 568
ErhI CCWWGG 1 cut(s) 1406
FaeI CATG 9 cut(s) 89, 101, 413, 566, 717, 785, 992, 1410, 1494
FatI CATG 9 cut(s) 85, 97, 409, 562, 713, 781, 988, 1406, 1490
FbaI TGATCA 3 cut(s) 88, 289, 1020
FokI GGATG 3 cut(s) 221, 430, 895
FspBI CTAG 3 cut(s) 513, 638, 921
GlaI GCGC 1 cut(s) 660
GsuI CTGGAG 2 cut(s) 238, 789
HaeIII GGCC 6 cut(s) 151, 790, 831, 1056, 1262, 1470
HapII CCGG 3 cut(s) 123, 873, 1502
HhaI GCGC 1 cut(s) 661
Hin1II CATG 9 cut(s) 89, 101, 413, 566, 717, 785, 992, 1410, 1494
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HinfI GANTC 8 cut(s) 24, 82, 269, 282, 406, 896, 1112, 1324
HpaII CCGG 3 cut(s) 123, 873, 1502
HphI GGTGA 3 cut(s) 83, 977, 1433
Hpy166II GTNNAC 1 cut(s) 531
Hpy188I TCNGA 7 cut(s) 346, 380, 802, 1033, 1159, 1458, 1528
Hpy188III TCNNGA 5 cut(s) 86, 410, 873, 1077, 1511
Hpy8I GTNNAC 1 cut(s) 531
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 2 cut(s) 780, 1274
HpyCH4III ACNGT 3 cut(s) 722, 917, 953
HpyCH4IV ACGT 1 cut(s) 1487
HpyF3I CTNAG 2 cut(s) 260, 1179
HpySE526I ACGT 1 cut(s) 1487
Hsp92II CATG 9 cut(s) 89, 101, 413, 566, 717, 785, 992, 1410, 1494
HspAI GCGC 1 cut(s) 659
Kpn2I TCCGGA 1 cut(s) 872
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Ksp22I TGATCA 3 cut(s) 88, 289, 1020
LguI GCTCTTC 1 cut(s) 1454
LmnI GCTCC 2 cut(s) 770, 810
LweI GCATC 4 cut(s) 424, 575, 879, 1212
MabI ACCWGGT 1 cut(s) 647
MaeI CTAG 3 cut(s) 513, 638, 921
MaeII ACGT 1 cut(s) 1487
MaeIII GTNAC 3 cut(s) 716, 983, 1004
MfeI CAATTG 1 cut(s) 520
MflI RGATCY 3 cut(s) 869, 1402, 1453
MlyI GAGTC 3 cut(s) 18, 276, 400
MmeI TCCRAC 4 cut(s) 213, 270, 358, 936
Mph1103I ATGCAT 2 cut(s) 564, 568
MroI TCCGGA 1 cut(s) 872
MroNI GCCGGC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 1323
MseI TTAA 4 cut(s) 603, 948, 1200, 1335
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 5 cut(s) 8, 107, 113, 119, 548
MspI CCGG 3 cut(s) 123, 873, 1502
MspR9I CCNGG 2 cut(s) 649, 1502
MunI CAATTG 1 cut(s) 520
MvaI CCWGG 1 cut(s) 649
NaeI GCCGGC 1 cut(s) 124
NciI CCSGG 1 cut(s) 1502
NcoI CCATGG 1 cut(s) 1406
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 9 cut(s) 89, 101, 413, 566, 717, 785, 992, 1410, 1494
NlaIV GGNNCC 5 cut(s) 158, 871, 1230, 1404, 1482
NmeAIII GCCGAG 2 cut(s) 116, 1026
NmuCI GTSAC 1 cut(s) 983
NsiI ATGCAT 2 cut(s) 564, 568
NspI RCATGY 1 cut(s) 566
NspV TTCGAA 1 cut(s) 585
PaeI GCATGC 1 cut(s) 566
PagI TCATGA 2 cut(s) 85, 409
PaqCI CACCTGC 1 cut(s) 1348
PceI AGGCCT 2 cut(s) 1056, 1470
PciSI GCTCTTC 1 cut(s) 1454
PcsI WCGNNNNNNNCGW 1 cut(s) 143
PdiI GCCGGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 1323
PfeI GAWTC 5 cut(s) 82, 269, 896, 1112, 1324
PleI GAGTC 3 cut(s) 18, 276, 400
PpsI GAGTC 3 cut(s) 18, 276, 400
PshBI ATTAAT 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 647
PspGI CCWGG 1 cut(s) 647
PspN4I GGNNCC 5 cut(s) 158, 871, 1230, 1404, 1482
PspPI GGNCC 2 cut(s) 651, 1261
PsrI GAACNNNNNNTAC 2 cut(s) 1322, 1354
PstI CTGCAG 3 cut(s) 112, 553, 853
PstNI CAGNNNCTG 4 cut(s) 11, 107, 648, 1554
PsuI RGATCY 3 cut(s) 869, 1402, 1453
PvuII CAGCTG 4 cut(s) 8, 107, 113, 548
RsaI GTAC 7 cut(s) 226, 473, 902, 1150, 1311, 1331, 1495
RsaNI GTAC 7 cut(s) 225, 472, 901, 1149, 1310, 1330, 1494
RseI CAYNNNNRTG 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 1454
SaqAI TTAA 4 cut(s) 603, 948, 1200, 1335
Sau96I GGNCC 2 cut(s) 651, 1261
ScaI AGTACT 2 cut(s) 226, 1311
SchI GAGTC 3 cut(s) 18, 276, 400
ScrFI CCNGG 2 cut(s) 649, 1502
SexAI ACCWGGT 1 cut(s) 647
SfaNI GCATC 4 cut(s) 424, 575, 879, 1212
SfcI CTRYAG 3 cut(s) 108, 549, 849
SfuI TTCGAA 1 cut(s) 585
SinI GGWCC 1 cut(s) 651
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
SphI GCATGC 1 cut(s) 566
SseBI AGGCCT 2 cut(s) 1056, 1470
SsiI CCGC 2 cut(s) 117, 1394
SspI AATATT 2 cut(s) 328, 817
SspMI CTAG 3 cut(s) 513, 638, 921
StuI AGGCCT 2 cut(s) 1056, 1470
StyD4I CCNGG 2 cut(s) 647, 1500
StyI CCWWGG 1 cut(s) 1406
TaaI ACNGT 3 cut(s) 722, 917, 953
TaiI ACGT 1 cut(s) 1490
TaqI TCGA 3 cut(s) 27, 585, 955
TatI WGTACW 4 cut(s) 224, 1148, 1309, 1329
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 5 cut(s) 82, 269, 896, 1112, 1324
Tru1I TTAA 4 cut(s) 603, 948, 1200, 1335
Tru9I TTAA 4 cut(s) 603, 948, 1200, 1335
TscAI CASTG 1 cut(s) 922
TseFI GTSAC 1 cut(s) 983
Tsp45I GTSAC 1 cut(s) 983
TspDTI ATGAA 5 cut(s) 755, 897, 1125, 1194, 1332
TspRI CASTG 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 651
VspI ATTAAT 1 cut(s) 603
XapI RAATTY 1 cut(s) 925
XceI RCATGY 1 cut(s) 566
XmnI GAANNNNTTC 1 cut(s) 1323
XspI CTAG 3 cut(s) 513, 638, 921
ZrmI AGTACT 2 cut(s) 226, 1311
Zsp2I ATGCAT 2 cut(s) 564, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.