Rroxscaffold_1G00004850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017862
Physical Location & Seq
Forward (+)
6600315 .. 6632994
32680 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004850.1

Sequence Viewer

Length: 1098 bp
ATGAGGAGAAGAAAAACTAAGAGAGGCGACATAGATGAGAAGAGTTGCATGATAAAGACACTACTGCTGGCAGATCTACGGCTCACAGACGGTGAAGAGAATCGGCCTCTTCGTTCTCCGCCTTCAACAAAAACCATCCTCCTCTTCGTTCTCGGGCCTCCGACGACAACCCTCCTCCTCGTCTTCGTTCTGCGGCTACAATCACAACCCGACCGCGCTCGTCCTCCTCCTTTTCGGCCTCGGACCGGCTCCTCTCGCTCAAAGACGGTGAAGAGAATCGAGAGATCGAGGCTGGCCTTTTGGAGAAAATTTGAGCTTTTGTGTCATAGATTTGTTGGCAACATGTATGTTCGAGGAGAAAAGCTCGAGTGGAGGATGATTCGCACGAAAGAGGCACGAAAAGAAGCTCGAAAGAAGCAAAGATGCTTCCTCCAAGCTGCTTGCAACGATTTAGCCTTGTGGAGCTCAAATTTGGAAGATTGGGAATCTAGGGTTCTTCGAATTTACGAACTTGCGAGAATGATGGTTGATATGATTATCGAAAAGGAGAAGGTAAAAGGAATGGTGCTTGATATGATTCATTTGCAATCGATGTTGGTTGTTGTCCGGACATCGGTGAAAAACGCGCTTATACGATGTACGTATCTTTTACATCAGCCACAAAGACAACGCAAAGCATATTCAAACACATCCCCATACCTCGAGAGCTCGGCAACATTGAATCTGAAACCCAGATTGGGATTCAGAAAATCTAATAATCTATTGGGTGCCGACGTGGCCAGGCGAGGTCTGATACCGGCAGTTTTGTGGGATCTTCTCATAGGGAAAATTCTTAAAATACAACCCATAAAAGGAGGGATTAGAGTAATAGAGAAATACTCAAGTGGCGAGTTCGAGGGACTCGGCGTTGTGAATGATGGAACCGGCGATGACTACGGTGACGGTGGGAATCATGGCACTGTGTCGAGGGTTCAAGATGTAGGAGAAGGCGGTGTAAAGATCAAGCCATTTGATGTGGAGAGCAGATCACAAACGGGGTATGTTGATTTTGGTCGATTTGACAAGTTCAACCACTTTATTTCGGTTCGGGGCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

365

Amino Acids

41.82

Weight (kDa)

10.21

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 767
AccII CGCG 2 cut(s) 216, 626
AccIII TCCGGA 1 cut(s) 606
AciI CCGC 4 cut(s) 119, 193, 214, 990
AclWI GGATC 1 cut(s) 819
AcoI YGGCCR 1 cut(s) 777
AcsI RAATTY 4 cut(s) 308, 469, 501, 828
AfaI GTAC 1 cut(s) 640
AfiI CCNNNNNNNGG 4 cut(s) 245, 613, 737, 851
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 5 cut(s) 126, 684, 721, 974, 1069
AjiI CACGTC 1 cut(s) 775
AjnI CCWGG 1 cut(s) 779
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
AluBI AGCT 6 cut(s) 316, 364, 407, 437, 465, 708
AluI AGCT 6 cut(s) 316, 364, 407, 437, 465, 708
Alw21I GWGCWC 2 cut(s) 467, 710
AlwI GGATC 1 cut(s) 819
Ama87I CYCGRG 3 cut(s) 152, 365, 701
Aor13HI TCCGGA 1 cut(s) 606
AoxI GGCC 5 cut(s) 104, 155, 236, 294, 777
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 4 cut(s) 308, 469, 501, 828
AspLEI GCGC 2 cut(s) 218, 628
AspS9I GGNCC 2 cut(s) 155, 243
AsuHPI GGTGA 4 cut(s) 104, 280, 628, 950
AsuII TTCGAA 1 cut(s) 499
AvaI CYCGRG 3 cut(s) 152, 365, 701
AvaII GGWCC 1 cut(s) 243
BalI TGGCCA 1 cut(s) 779
BanI GGYRCC 1 cut(s) 767
BanII GRGCYC 2 cut(s) 467, 710
BbsI GAAGAC 1 cut(s) 175
Bbv12I GWGCWC 2 cut(s) 467, 710
BbvI GCAGC 1 cut(s) 424
BccI CCATC 3 cut(s) 143, 517, 911
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 781
BfaI CTAG 1 cut(s) 489
BglI GCCNNNNNGGC 1 cut(s) 776
BglII AGATCT 1 cut(s) 73
BisI GCNGC 2 cut(s) 194, 438
BlsI GCNGC 2 cut(s) 195, 439
Bme1390I CCNGG 1 cut(s) 781
Bme18I GGWCC 1 cut(s) 243
BmeT110I CYCGRG 3 cut(s) 152, 365, 701
BmgBI CACGTC 1 cut(s) 775
BmgT120I GGNCC 2 cut(s) 155, 243
BmiI GGNNCC 3 cut(s) 250, 769, 922
BmrFI CCNGG 1 cut(s) 781
BmsI GCATC 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 175
BplI GAGNNNNNCTC 4 cut(s) 348, 380, 863, 895
Bpu14I TTCGAA 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 865
Bsa29I ATCGAT 1 cut(s) 590
BsaAI YACGTR 1 cut(s) 642
BsaJI CCNNGG 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 606
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 613, 737, 851
Bse118I RCCGGY 3 cut(s) 245, 796, 923
BseAI TCCGGA 1 cut(s) 606
BseBI CCWGG 1 cut(s) 781
BseCI ATCGAT 1 cut(s) 590
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 3 cut(s) 135, 381, 689
BseLI CCNNNNNNNGG 4 cut(s) 245, 613, 737, 851
BseRI GAGGAG 7 cut(s) 19, 131, 164, 167, 216, 241, 369
BseXI GCAGC 1 cut(s) 424
Bsh1236I CGCG 2 cut(s) 216, 626
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 5 cut(s) 106, 157, 238, 296, 779
BshNI GGYRCC 1 cut(s) 767
BshVI ATCGAT 1 cut(s) 590
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 2 cut(s) 467, 710
BsiHKCI CYCGRG 3 cut(s) 152, 365, 701
BsiSI CCGG 4 cut(s) 246, 607, 797, 924
BslFI GGGAC 1 cut(s) 912
BslI CCNNNNNNNGG 4 cut(s) 245, 613, 737, 851
BsmFI GGGAC 1 cut(s) 912
BsnI GGCC 5 cut(s) 106, 157, 238, 296, 779
BsoBI CYCGRG 3 cut(s) 152, 365, 701
Bsp119I TTCGAA 1 cut(s) 499
Bsp1286I GDGCHC 2 cut(s) 467, 710
Bsp13I TCCGGA 1 cut(s) 606
Bsp143I GATC 5 cut(s) 73, 284, 811, 999, 1025
BspACI CCGC 4 cut(s) 119, 193, 214, 990
BspANI GGCC 5 cut(s) 106, 157, 238, 296, 779
BspDI ATCGAT 1 cut(s) 590
BspEI TCCGGA 1 cut(s) 606
BspFNI CGCG 2 cut(s) 216, 626
BspLI GGNNCC 3 cut(s) 250, 769, 922
BspPI GGATC 1 cut(s) 819
BspT104I TTCGAA 1 cut(s) 499
BspT107I GGYRCC 1 cut(s) 767
BsrFI RCCGGY 3 cut(s) 245, 796, 923
BssAI RCCGGY 3 cut(s) 245, 796, 923
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 5 cut(s) 73, 284, 811, 999, 1025
Bst2UI CCWGG 1 cut(s) 781
Bst4CI ACNGT 5 cut(s) 92, 268, 938, 944, 961
Bst6I CTCTTC 5 cut(s) 35, 90, 114, 149, 266
BstBAI YACGTR 1 cut(s) 642
BstBI TTCGAA 1 cut(s) 499
BstC8I GCNNGC 3 cut(s) 69, 294, 442
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 3 cut(s) 135, 381, 689
BstFNI CGCG 2 cut(s) 216, 626
BstHHI GCGC 2 cut(s) 218, 628
BstKTI GATC 5 cut(s) 76, 287, 814, 1002, 1028
BstMBI GATC 5 cut(s) 73, 284, 811, 999, 1025
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 255, 776
BstNI CCWGG 1 cut(s) 781
BstNSI RCATGY 2 cut(s) 346, 1096
BstSCI CCNGG 1 cut(s) 779
BstSNI TACGTA 1 cut(s) 642
BstUI CGCG 2 cut(s) 216, 626
BstV1I GCAGC 1 cut(s) 424
BstV2I GAAGAC 1 cut(s) 175
BstX2I RGATCY 2 cut(s) 73, 811
BstYI RGATCY 2 cut(s) 73, 811
Bsu15I ATCGAT 1 cut(s) 590
BsuRI GGCC 5 cut(s) 106, 157, 238, 296, 779
BsuTUI ATCGAT 1 cut(s) 590
BtgZI GCGATG 1 cut(s) 942
BtrI CACGTC 1 cut(s) 775
BtsCI GGATG 3 cut(s) 135, 381, 689
BtsIMutI CAGTG 1 cut(s) 957
Cac8I GCNNGC 3 cut(s) 69, 294, 442
CfoI GCGC 2 cut(s) 218, 628
Cfr10I RCCGGY 3 cut(s) 245, 796, 923
Cfr13I GGNCC 2 cut(s) 155, 243
ClaI ATCGAT 1 cut(s) 590
CpoI CGGWCCG 1 cut(s) 243
Csp6I GTAC 1 cut(s) 639
CspI CGGWCCG 1 cut(s) 243
CviAII CATG 4 cut(s) 49, 343, 953, 1093
CviQI GTAC 1 cut(s) 639
DdeI CTNAG 1 cut(s) 18
DpnI GATC 5 cut(s) 75, 286, 813, 1001, 1027
DpnII GATC 5 cut(s) 73, 284, 811, 999, 1025
EaeI YGGCCR 1 cut(s) 777
Eam1104I CTCTTC 5 cut(s) 35, 90, 114, 149, 266
EarI CTCTTC 5 cut(s) 35, 90, 114, 149, 266
EciI GGCGGA 1 cut(s) 108
Ecl136II GAGCTC 2 cut(s) 465, 708
Eco105I TACGTA 1 cut(s) 642
Eco24I GRGCYC 2 cut(s) 467, 710
Eco47I GGWCC 1 cut(s) 243
Eco53kI GAGCTC 2 cut(s) 465, 708
Eco88I CYCGRG 3 cut(s) 152, 365, 701
EcoICRI GAGCTC 2 cut(s) 465, 708
EcoRII CCWGG 1 cut(s) 779
EcoT38I GRGCYC 2 cut(s) 467, 710
FaeI CATG 4 cut(s) 52, 346, 956, 1096
FaqI GGGAC 1 cut(s) 912
FatI CATG 4 cut(s) 48, 342, 952, 1092
Fnu4HI GCNGC 2 cut(s) 194, 438
FokI GGATG 3 cut(s) 122, 388, 676
FriOI GRGCYC 2 cut(s) 467, 710
Fsp4HI GCNGC 2 cut(s) 194, 438
FspBI CTAG 1 cut(s) 489
GlaI GCGC 2 cut(s) 217, 627
GluI GCNGC 2 cut(s) 194, 438
HaeIII GGCC 5 cut(s) 106, 157, 238, 296, 779
HapII CCGG 4 cut(s) 246, 607, 797, 924
HhaI GCGC 2 cut(s) 218, 628
Hin1II CATG 4 cut(s) 52, 346, 956, 1096
Hin6I GCGC 2 cut(s) 216, 626
HinP1I GCGC 2 cut(s) 216, 626
HinfI GANTC 9 cut(s) 100, 276, 379, 485, 577, 721, 741, 900, 949
HpaII CCGG 4 cut(s) 246, 607, 797, 924
HphI GGTGA 4 cut(s) 104, 280, 628, 950
Hpy188I TCNGA 5 cut(s) 162, 243, 726, 746, 792
Hpy188III TCNNGA 4 cut(s) 280, 607, 703, 974
Hpy99I CGWCG 2 cut(s) 166, 776
HpyAV CCTTC 3 cut(s) 132, 544, 980
HpyCH4III ACNGT 5 cut(s) 92, 268, 938, 944, 961
HpyCH4IV ACGT 2 cut(s) 641, 774
HpyCH4V TGCA 3 cut(s) 48, 444, 586
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 776
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 2 cut(s) 641, 774
Hsp92II CATG 4 cut(s) 52, 346, 956, 1096
HspAI GCGC 2 cut(s) 216, 626
Kpn2I TCCGGA 1 cut(s) 606
Kzo9I GATC 5 cut(s) 73, 284, 811, 999, 1025
LmnI GCTCC 2 cut(s) 254, 462
LpnPI CCDG 9 cut(s) 53, 259, 278, 620, 745, 766, 793, 810, 937
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 1 cut(s) 413
MaeI CTAG 1 cut(s) 489
MaeII ACGT 2 cut(s) 641, 774
MaeIII GTNAC 1 cut(s) 938
MalI GATC 5 cut(s) 75, 286, 813, 1001, 1027
MboI GATC 5 cut(s) 73, 284, 811, 999, 1025
MflI RGATCY 2 cut(s) 73, 811
MhlI GDGCHC 2 cut(s) 467, 710
MlsI TGGCCA 1 cut(s) 779
MluCI AATT 4 cut(s) 308, 469, 501, 828
MluNI TGGCCA 1 cut(s) 779
MlyI GAGTC 1 cut(s) 894
MmeI TCCRAC 1 cut(s) 185
Mox20I TGGCCA 1 cut(s) 779
MroI TCCGGA 1 cut(s) 606
MscI TGGCCA 1 cut(s) 779
MseI TTAA 1 cut(s) 834
Msp20I TGGCCA 1 cut(s) 779
MspI CCGG 4 cut(s) 246, 607, 797, 924
MspR9I CCNGG 1 cut(s) 781
MvaI CCWGG 1 cut(s) 781
MvnI CGCG 2 cut(s) 216, 626
MwoI GCNNNNNNNGC 2 cut(s) 255, 776
NdeII GATC 5 cut(s) 73, 284, 811, 999, 1025
NlaIII CATG 4 cut(s) 52, 346, 956, 1096
NlaIV GGNNCC 3 cut(s) 250, 769, 922
NmeAIII GCCGAG 2 cut(s) 689, 882
NmuCI GTSAC 1 cut(s) 938
NspI RCATGY 2 cut(s) 346, 1096
NspV TTCGAA 1 cut(s) 499
PaeR7I CTCGAG 2 cut(s) 365, 701
PciI ACATGT 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PfeI GAWTC 8 cut(s) 100, 276, 379, 485, 577, 721, 741, 949
PkrI GCNGC 2 cut(s) 195, 439
PleI GAGTC 1 cut(s) 894
PpsI GAGTC 1 cut(s) 894
Ppu21I YACGTR 1 cut(s) 642
PscI ACATGT 1 cut(s) 342
Psp124BI GAGCTC 2 cut(s) 467, 710
Psp6I CCWGG 1 cut(s) 779
PspGI CCWGG 1 cut(s) 779
PspN4I GGNNCC 3 cut(s) 250, 769, 922
PspPI GGNCC 2 cut(s) 155, 243
PspXI VCTCGAGB 1 cut(s) 365
PsuI RGATCY 2 cut(s) 73, 811
RsaI GTAC 1 cut(s) 640
RsaNI GTAC 1 cut(s) 639
Rsr2I CGGWCCG 1 cut(s) 243
RsrII CGGWCCG 1 cut(s) 243
SacI GAGCTC 2 cut(s) 467, 710
SaqAI TTAA 1 cut(s) 834
SatI GCNGC 2 cut(s) 194, 438
Sau3AI GATC 5 cut(s) 73, 284, 811, 999, 1025
Sau96I GGNCC 2 cut(s) 155, 243
SchI GAGTC 1 cut(s) 894
ScrFI CCNGG 1 cut(s) 781
SduI GDGCHC 2 cut(s) 467, 710
SfaNI GCATC 1 cut(s) 413
Sfr274I CTCGAG 2 cut(s) 365, 701
SfuI TTCGAA 1 cut(s) 499
SinI GGWCC 1 cut(s) 243
SlaI CTCGAG 2 cut(s) 365, 701
SmlI CTYRAG 3 cut(s) 365, 701, 880
SmoI CTYRAG 3 cut(s) 365, 701, 880
SnaBI TACGTA 1 cut(s) 642
Sse9I AATT 4 cut(s) 308, 469, 501, 828
SsiI CCGC 4 cut(s) 119, 193, 214, 990
SspMI CTAG 1 cut(s) 489
SstI GAGCTC 2 cut(s) 467, 710
StyD4I CCNGG 1 cut(s) 779
TaaI ACNGT 5 cut(s) 92, 268, 938, 944, 961
TaiI ACGT 2 cut(s) 644, 777
TasI AATT 4 cut(s) 308, 469, 501, 828
TauI GCSGC 1 cut(s) 196
TfiI GAWTC 8 cut(s) 100, 276, 379, 485, 577, 721, 741, 949
Tru1I TTAA 1 cut(s) 834
Tru9I TTAA 1 cut(s) 834
TscAI CASTG 1 cut(s) 964
TseFI GTSAC 1 cut(s) 938
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 938
TspDTI ATGAA 1 cut(s) 569
TspRI CASTG 1 cut(s) 964
VpaK11BI GGWCC 1 cut(s) 243
XapI RAATTY 4 cut(s) 308, 469, 501, 828
XceI RCATGY 2 cut(s) 346, 1096
XhoI CTCGAG 2 cut(s) 365, 701
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.