Rroxscaffold_3G00267700

Galactinol--sucrose galactosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017862
Physical Location & Seq
Forward (+)
60870133 .. 60884371
14239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00267700.1

Sequence Viewer

Length: 381 bp
ATGGACCTTGTAGACAGCAACTCACCACTGTCAATAACACTACAAGGCACAAACTTCCTCTCCAACAGCCACCCAATCCTCACTGAAGTCTCACTAAACATCACAGCCACTCCATCACCAAACAAAACCACCGTGGGCTGCTTTATTGACTTCGACGCCGACGATCCCAAAAGCAGCCATGTGGTGCCGCTCGGCAAACTCGGTAGCATCAAGTTCATAGTAGCTGTTCAATCCATCAAGGTTTCGTTATGGCCGGTATTGGAGTGCAATCTGATCCAGGGAATGCAAGGGGTGTTGACTGAAATTGGGGGTTCTACAGCTCGGTTTTGGAGCTGGGTTTGGTTGGGGCCACTGTTGGGCGGAAGAATTGGAAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Raffinose_syn

Protein Analysis

126

Amino Acids

13.57

Weight (kDa)

6.02

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Raffinose_syn PF05691 18 - 75 3e-06 Raffinose synthase or seed imbibition protein Sip1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AccBSI CCGCTC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 12
AciI CCGC 2 cut(s) 188, 360
AclWI GGATC 2 cut(s) 158, 268
AcoI YGGCCR 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 1 cut(s) 276
AluBI AGCT 3 cut(s) 224, 320, 333
AluI AGCT 3 cut(s) 224, 320, 333
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 2 cut(s) 158, 268
AoxI GGCC 2 cut(s) 251, 347
ApeKI GCWGC 2 cut(s) 138, 174
AspS9I GGNCC 2 cut(s) 4, 347
AsuHPI GGTGA 2 cut(s) 15, 108
AvaII GGWCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 184
BbvI GCAGC 2 cut(s) 125, 186
BccI CCATC 2 cut(s) 121, 242
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 1 cut(s) 94
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 3 cut(s) 139, 175, 188
BlsI GCNGC 3 cut(s) 140, 176, 189
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 2 cut(s) 4, 347
BmiI GGNNCC 2 cut(s) 186, 348
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 132, 277
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 94, 124
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse118I RCCGGY 1 cut(s) 253
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 2 cut(s) 132, 277
BseLI CCNNNNNNNGG 1 cut(s) 356
BseXI GCAGC 2 cut(s) 125, 186
BseYI CCCAGC 1 cut(s) 333
BshFI GGCC 2 cut(s) 253, 349
BshNI GGYRCC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 254
BslI CCNNNNNNNGG 1 cut(s) 356
BsmAI GTCTC 1 cut(s) 94
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 2 cut(s) 253, 349
Bsp143I GATC 2 cut(s) 163, 273
BspACI CCGC 2 cut(s) 188, 360
BspANI GGCC 2 cut(s) 253, 349
BspLI GGNNCC 2 cut(s) 186, 348
BspPI GGATC 2 cut(s) 158, 268
BspT107I GGYRCC 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 2 cut(s) 132, 277
BssMI GATC 2 cut(s) 163, 273
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 30, 133, 354
BstACI GRCGYC 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 132
BstKTI GATC 2 cut(s) 166, 276
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 2 cut(s) 163, 273
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 125, 186
BsuRI GGCC 2 cut(s) 253, 349
BtgI CCRYGG 1 cut(s) 132
BtsIMutI CAGTG 3 cut(s) 26, 81, 350
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 4, 347
CseI GACGC 1 cut(s) 164
CviAII CATG 1 cut(s) 179
CviJI RGCY 9 cut(s) 69, 107, 138, 177, 224, 253, 320, 333, 349
CviKI_1 RGCY 9 cut(s) 69, 107, 138, 177, 224, 253, 320, 333, 349
DpnI GATC 2 cut(s) 165, 275
DpnII GATC 2 cut(s) 163, 273
EaeI YGGCCR 1 cut(s) 251
EciI GGCGGA 1 cut(s) 375
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 276
FaeI CATG 1 cut(s) 182
FaiI YATR 3 cut(s) 180, 218, 250
FatI CATG 1 cut(s) 178
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 3 cut(s) 139, 175, 188
Fsp4HI GCNGC 3 cut(s) 139, 175, 188
GluI GCNGC 3 cut(s) 139, 175, 188
GsaI CCCAGC 1 cut(s) 337
HaeIII GGCC 2 cut(s) 253, 349
HapII CCGG 1 cut(s) 254
HgaI GACGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 1 cut(s) 182
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HpaII CCGG 1 cut(s) 254
HphI GGTGA 2 cut(s) 15, 108
Hpy166II GTNNAC 2 cut(s) 13, 297
Hpy188I TCNGA 1 cut(s) 273
Hpy8I GTNNAC 2 cut(s) 13, 297
Hpy99I CGWCG 2 cut(s) 158, 164
HpyCH4III ACNGT 3 cut(s) 30, 133, 354
HpyCH4V TGCA 2 cut(s) 267, 286
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 1 cut(s) 182
Kzo9I GATC 2 cut(s) 163, 273
LmnI GCTCC 1 cut(s) 330
LpnPI CCDG 4 cut(s) 263, 267, 290, 319
Lsp1109I GCAGC 2 cut(s) 125, 186
LweI GCATC 1 cut(s) 216
MalI GATC 2 cut(s) 165, 275
MbiI CCGCTC 1 cut(s) 190
MboI GATC 2 cut(s) 163, 273
MboII GAAGA 1 cut(s) 375
MluCI AATT 2 cut(s) 303, 366
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 2 cut(s) 68, 89
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 288
MvaI CCWGG 1 cut(s) 278
NdeII GATC 2 cut(s) 163, 273
NlaIII CATG 1 cut(s) 182
NlaIV GGNNCC 2 cut(s) 186, 348
NmeAIII GCCGAG 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 288
PkrI GCNGC 3 cut(s) 140, 176, 189
Psp6I CCWGG 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 333
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 186, 348
PspPI GGNCC 2 cut(s) 4, 347
SatI GCNGC 3 cut(s) 139, 175, 188
Sau3AI GATC 2 cut(s) 163, 273
Sau96I GGNCC 2 cut(s) 4, 347
ScrFI CCNGG 1 cut(s) 278
SetI ASST 5 cut(s) 9, 226, 243, 322, 335
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 315
SinI GGWCC 1 cut(s) 4
Sse9I AATT 2 cut(s) 303, 366
SsiI CCGC 2 cut(s) 188, 360
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 30, 133, 354
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 303, 366
TauI GCSGC 1 cut(s) 190
TscAI CASTG 3 cut(s) 33, 88, 357
TseI GCWGC 2 cut(s) 138, 174
TspDTI ATGAA 1 cut(s) 205
TspRI CASTG 3 cut(s) 33, 88, 357
VpaK11BI GGWCC 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.