Rroxscaffold_7G00179660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017862
Physical Location & Seq
Reverse (-)
19155966 .. 19158442
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179660.1

Sequence Viewer

Length: 333 bp
ATGTGGTGCCGCTCGGCAAACTCAGCAGCTAGCATCAAGTTCATAGCAGCTGTTCAATCCATCAAGGTTTCGTTATGGCCAGTATTGGAGTGTAATCTGATCCAGGGAATGCAAGGGGTGTTGACTGAAATTCTGGGGGTTCTACAGCTCGGTTTTGGAGCTGGGTTTGGTTGGGGCCACTGTTGGGCGGAAGAATTGGAAGATTTTAGCATTTGCTCCTTCAGCCACGCCAATTGCAAGATCGAATTGTGTAGTTGTGTGAAGTTCGGGGTGTGGAATTGGAGCAGTGGAGGTTTGTTTTTGGAGGAGTGTGCTGTTGGGACAGTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.95

Weight (kDa)

4.85

Isoelectric Point (pI)

48.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 6
AccBSI CCGCTC 1 cut(s) 12
AciI CCGC 2 cut(s) 10, 188
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 1 cut(s) 56
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 4 cut(s) 29, 50, 148, 161
AluI AGCT 4 cut(s) 29, 50, 148, 161
AlwI GGATC 1 cut(s) 94
AoxI GGCC 2 cut(s) 77, 175
ApeKI GCWGC 2 cut(s) 26, 47
ApoI RAATTY 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 175
AsuNHI GCTAGC 1 cut(s) 29
BalI TGGCCA 1 cut(s) 79
BanI GGYRCC 1 cut(s) 6
BbvI GCAGC 2 cut(s) 38, 59
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 104
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 143
BisI GCNGC 3 cut(s) 10, 27, 48
BlsI GCNGC 3 cut(s) 11, 28, 49
Bme1390I CCNGG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 8, 176
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 42
BmtI GCTAGC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 80
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 320
BseXI GCAGC 2 cut(s) 38, 59
BseYI CCCAGC 1 cut(s) 161
BshFI GGCC 2 cut(s) 79, 177
BshNI GGYRCC 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 184
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 2 cut(s) 79, 177
Bsp143I GATC 2 cut(s) 99, 240
BspACI CCGC 2 cut(s) 10, 188
BspANI GGCC 2 cut(s) 79, 177
BspCNI CTCAG 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 8, 176
BspOI GCTAGC 1 cut(s) 33
BspPI GGATC 1 cut(s) 94
BspT107I GGYRCC 1 cut(s) 6
BsrBI CCGCTC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 2 cut(s) 99, 240
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 182, 325
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 1 cut(s) 22
BstKTI GATC 2 cut(s) 102, 243
BstMBI GATC 2 cut(s) 99, 240
BstMWI GCNNNNNNNGC 2 cut(s) 23, 222
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 38, 59
BsuRI GGCC 2 cut(s) 79, 177
BtsI GCAGTG 1 cut(s) 292
BtsIMutI CAGTG 2 cut(s) 178, 292
Cac8I GCNNGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 175
CspCI CAANNNNNGTGG 2 cut(s) 215, 250
CviJI RGCY 7 cut(s) 29, 50, 79, 148, 161, 177, 225
CviKI_1 RGCY 7 cut(s) 29, 50, 79, 148, 161, 177, 225
DdeI CTNAG 1 cut(s) 22
DpnI GATC 2 cut(s) 101, 242
DpnII GATC 2 cut(s) 99, 240
EaeI YGGCCR 1 cut(s) 77
EciI GGCGGA 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 102
FaiI YATR 2 cut(s) 44, 76
Fnu4HI GCNGC 3 cut(s) 10, 27, 48
Fsp4HI GCNGC 3 cut(s) 10, 27, 48
FspBI CTAG 1 cut(s) 30
GluI GCNGC 3 cut(s) 10, 27, 48
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 2 cut(s) 79, 177
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 99
Hpy8I GTNNAC 1 cut(s) 123
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 182, 325
HpyCH4V TGCA 2 cut(s) 112, 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 222
HpyF3I CTNAG 1 cut(s) 22
Kzo9I GATC 2 cut(s) 99, 240
LmnI GCTCC 3 cut(s) 158, 221, 282
LpnPI CCDG 5 cut(s) 89, 93, 116, 119, 147
Lsp1109I GCAGC 2 cut(s) 38, 59
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 30
MalI GATC 2 cut(s) 101, 242
MbiI CCGCTC 1 cut(s) 12
MboI GATC 2 cut(s) 99, 240
MboII GAAGA 2 cut(s) 203, 212
MfeI CAATTG 1 cut(s) 232
MlsI TGGCCA 1 cut(s) 79
MluCI AATT 5 cut(s) 129, 194, 232, 245, 277
MluNI TGGCCA 1 cut(s) 79
MnlI CCTC 2 cut(s) 284, 298
Mox20I TGGCCA 1 cut(s) 79
MscI TGGCCA 1 cut(s) 79
Msp20I TGGCCA 1 cut(s) 79
MspA1I CMGCKG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 104
MunI CAATTG 1 cut(s) 232
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 23, 222
NdeII GATC 2 cut(s) 99, 240
NheI GCTAGC 1 cut(s) 29
NlaIV GGNNCC 2 cut(s) 8, 176
PctI GAATGC 1 cut(s) 114
PkrI GCNGC 3 cut(s) 11, 28, 49
Psp6I CCWGG 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 8, 176
PspPI GGNCC 1 cut(s) 175
PvuII CAGCTG 1 cut(s) 50
SatI GCNGC 3 cut(s) 10, 27, 48
Sau3AI GATC 2 cut(s) 99, 240
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 104
SetI ASST 6 cut(s) 31, 52, 69, 150, 163, 295
SfaNI GCATC 1 cut(s) 42
SfcI CTRYAG 1 cut(s) 143
Sse9I AATT 5 cut(s) 129, 194, 232, 245, 277
SsiI CCGC 2 cut(s) 10, 188
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 182, 325
TaqI TCGA 1 cut(s) 243
TasI AATT 5 cut(s) 129, 194, 232, 245, 277
TauI GCSGC 1 cut(s) 12
TscAI CASTG 2 cut(s) 185, 292
TseI GCWGC 2 cut(s) 26, 47
TspDTI ATGAA 1 cut(s) 31
TspRI CASTG 2 cut(s) 185, 292
XapI RAATTY 1 cut(s) 129
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.