Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0017862

Physical Location & Seq

Genomic Coordinates Reverse (-)

48736353 .. 48749347

Gene Structure 12995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCTCCTCGTGCCACCTCCTTCCGGTTCGTCAAACTTACAGAACCAACTCACCACCACCGATCGGAGCTCGGACTCGGACGACTCGGCTGTGCACCGAAAGACCGATGAAGTACTGTTCGAGTTGGATCCTGGTGTTGATTCGAATTATGTGCTCCTTGCCAACATATATGCAGCAGATGGTAGGTGGGATGGTGCAAACAAGGTTAGAAAAACTATGAAAGACCTTGGAATTCGAAGGTGCCAGGATTTAGTTCAGTTGAGATTAACCGTGATATTCATGAATTTGTGGGTGGTGATAAATCCCATGTTGATGCGACTCGTTGAAAGAGCTTTCGAGATATTTGGATACCTTGCACCTGAATATACAAGTGATCAATGGATTGACTTGGCGGACGATGCTACGACCCCGTCCAACAGAAAGCCCCTCCGACCATTCGTGCCTCCTTTAATACCGGCGTTGTCTTCCGAGTCCTCCGAATTCTTTGGAGACTCCTTTCTTGCCGGACACCATGATCAAAATCACCACTTTCTCGCCGCTTTCTTTCTATTTTTATTTTCTCCACTTCCTCCTCTACCCCCACCACGGCTACCACGACAACCATTGCGATTTCCCCGCTTCCAAAGACCTTTTCCCTTACTCGGGCCACCCTCTACCGAACTATTTTCTCCGGATCTGAAGGTATCCCCTTTTCGTTCTTTGTCGCCGCCGCAGGATAGAGGAGAGTCGAAATTAGGGATTGAAAGCCGATCCCCAAAGGAGAAGACCTTGGGTCCACTAACCGGGTCACCGGTAGGACCGGGAGAATGGGCTCGACTCGCGCTGATTTTGGCTCACATGTGTTTGACCCAACATTGGTTTGACTTCACGTGCCGCATTAACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

295

Amino Acids

33.29

Weight (kDa)

6.39

Isoelectric Point (pI)

57.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	34 - 79	5.1e-12	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017862)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00004850 Rroxscaffold_1G00028960 Rroxscaffold_2G00103200 Rroxscaffold_2G00120180 Rroxscaffold_3G00237870 Rroxscaffold_3G00239580 Rroxscaffold_3G00267700 Rroxscaffold_4G00320220 Rroxscaffold_5G00354610 Rroxscaffold_6G00391490 Rroxscaffold_7G00179660 Rroxscaffold_7G00194190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	1 cut(s)	821
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	6 cut(s)	392, 537, 616, 707, 710, 874
AclWI	GGATC	4 cut(s)	122, 135, 681, 744
AcsI	RAATTY	3 cut(s)	231, 283, 479
AcuI	CTGAAG	1 cut(s)	698
AcvI	CACGTG	1 cut(s)	870
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	7 cut(s)	23, 63, 585, 641, 642, 782, 855
AflIII	ACRYGT	1 cut(s)	837
AgeI	ACCGGT	1 cut(s)	790
AgsI	TTSAA	2 cut(s)	326, 743
AhdI	GACNNNNNGTC	1 cut(s)	771
AjnI	CCWGG	2 cut(s)	130, 243
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	2 cut(s)	69, 332
AluI	AGCT	2 cut(s)	69, 332
Alw21I	GWGCWC	3 cut(s)	71, 96, 156
Alw26I	GTCTC	1 cut(s)	483
Alw44I	GTGCAC	1 cut(s)	92
AlwI	GGATC	4 cut(s)	122, 135, 681, 744
Ama87I	CYCGRG	1 cut(s)	641
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	1 cut(s)	644
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	3 cut(s)	231, 283, 479
AsiGI	ACCGGT	1 cut(s)	790
AspLEI	GCGC	1 cut(s)	823
AspS9I	GGNCC	3 cut(s)	644, 773, 797
AsuC2I	CCSGG	2 cut(s)	784, 801
AsuHPI	GGTGA	4 cut(s)	43, 307, 515, 780
AsuII	TTCGAA	2 cut(s)	143, 235
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	2 cut(s)	773, 797
BaeGI	GKGCMC	1 cut(s)	96
BamHI	GGATCC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	2 cut(s)	71, 814
BauI	CACGAG	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	870
BbsI	GAAGAC	2 cut(s)	456, 770
Bbv12I	GWGCWC	3 cut(s)	71, 96, 156
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	2 cut(s)	173, 185
BceAI	ACGGC	1 cut(s)	602
BcgI	CGANNNNNNTGC	2 cut(s)	133, 167
BciT130I	CCWGG	2 cut(s)	132, 245
BciVI	GTATCC	2 cut(s)	341, 694
BclI	TGATCA	2 cut(s)	373, 514
BcnI	CCSGG	2 cut(s)	784, 801
BcoDI	GTCTC	1 cut(s)	483
BfuI	GTATCC	2 cut(s)	341, 694
BisI	GCNGC	5 cut(s)	174, 537, 707, 710, 874
BlsI	GCNGC	5 cut(s)	175, 538, 708, 711, 875
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	4 cut(s)	132, 245, 784, 801
Bme18I	GGWCC	2 cut(s)	773, 797
BmeRI	GACNNNNNGTC	1 cut(s)	771
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	3 cut(s)	644, 773, 797
BmiI	GGNNCC	3 cut(s)	129, 242, 774
BmrFI	CCNGG	4 cut(s)	132, 245, 784, 801
BmsI	GCATC	2 cut(s)	303, 388
BpiI	GAAGAC	2 cut(s)	456, 770
Bpu14I	TTCGAA	2 cut(s)	143, 235
BpuMI	CCSGG	2 cut(s)	784, 801
BsaAI	YACGTR	1 cut(s)	870
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	3 cut(s)	226, 584, 768
BsaWI	WCCGGW	3 cut(s)	23, 670, 790
Bsc4I	CCNNNNNNNGG	7 cut(s)	23, 63, 585, 641, 642, 782, 855
Bse118I	RCCGGY	2 cut(s)	454, 790
Bse3DI	GCAATG	1 cut(s)	602
Bse8I	GATNNNNATC	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	670
BseBI	CCWGG	2 cut(s)	132, 245
BseDI	CCNNGG	3 cut(s)	226, 584, 768
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	519
BseLI	CCNNNNNNNGG	7 cut(s)	23, 63, 585, 641, 642, 782, 855
BseMI	GCAATG	1 cut(s)	602
BseRI	GAGGAG	2 cut(s)	561, 735
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	821
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	1 cut(s)	646
BshNI	GGYRCC	1 cut(s)	240
BshTI	ACCGGT	1 cut(s)	790
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	3 cut(s)	71, 96, 156
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	7 cut(s)	24, 455, 504, 671, 783, 791, 800
BslI	CCNNNNNNNGG	7 cut(s)	23, 63, 585, 641, 642, 782, 855
BsmAI	GTCTC	1 cut(s)	483
BsnI	GGCC	1 cut(s)	646
BsoBI	CYCGRG	1 cut(s)	641
Bsp119I	TTCGAA	2 cut(s)	143, 235
Bsp1286I	GDGCHC	4 cut(s)	71, 96, 156, 814
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	6 cut(s)	61, 127, 373, 514, 673, 749
BspACI	CCGC	6 cut(s)	392, 537, 616, 707, 710, 874
BspANI	GGCC	1 cut(s)	646
BspEI	TCCGGA	1 cut(s)	670
BspFNI	CGCG	1 cut(s)	821
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	129, 242, 774
BspPI	GGATC	4 cut(s)	122, 135, 681, 744
BspT104I	TTCGAA	2 cut(s)	143, 235
BspT107I	GGYRCC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	602
BsrFI	RCCGGY	2 cut(s)	454, 790
BssAI	RCCGGY	2 cut(s)	454, 790
BssECI	CCNNGG	3 cut(s)	226, 584, 768
BssMI	GATC	6 cut(s)	61, 127, 373, 514, 673, 749
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	2 cut(s)	226, 768
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	2 cut(s)	132, 245
Bst4CI	ACNGT	2 cut(s)	117, 271
BstBAI	YACGTR	1 cut(s)	870
BstBI	TTCGAA	2 cut(s)	143, 235
BstDSI	CCRYGG	1 cut(s)	584
BstEII	GGTNACC	1 cut(s)	786
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	821
BstHHI	GCGC	1 cut(s)	823
BstKTI	GATC	6 cut(s)	64, 130, 376, 517, 676, 752
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	6 cut(s)	61, 127, 373, 514, 673, 749
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 398, 818
BstNI	CCWGG	2 cut(s)	132, 245
BstNSI	RCATGY	1 cut(s)	841
BstPI	GGTNACC	1 cut(s)	786
BstSCI	CCNGG	4 cut(s)	130, 243, 782, 799
BstSLI	GKGCMC	1 cut(s)	96
BstUI	CGCG	1 cut(s)	821
BstV1I	GCAGC	1 cut(s)	185
BstV2I	GAAGAC	2 cut(s)	456, 770
BstX2I	RGATCY	2 cut(s)	127, 673
BstYI	RGATCY	2 cut(s)	127, 673
BsuI	GTATCC	2 cut(s)	341, 694
BsuRI	GGCC	1 cut(s)	646
BtgI	CCRYGG	1 cut(s)	584
BtsCI	GGATG	1 cut(s)	196
CciI	TCATGA	1 cut(s)	279
CfoI	GCGC	1 cut(s)	823
Cfr10I	RCCGGY	2 cut(s)	454, 790
Cfr13I	GGNCC	3 cut(s)	644, 773, 797
Csp6I	GTAC	1 cut(s)	113
CspAI	ACCGGT	1 cut(s)	790
CviAII	CATG	4 cut(s)	280, 307, 512, 838
CviJI	RGCY	9 cut(s)	69, 89, 332, 424, 589, 646, 747, 812, 833
CviKI_1	RGCY	9 cut(s)	69, 89, 332, 424, 589, 646, 747, 812, 833
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	6 cut(s)	63, 129, 375, 516, 675, 751
DpnII	GATC	6 cut(s)	61, 127, 373, 514, 673, 749
DriI	GACNNNNNGTC	1 cut(s)	771
Eam1105I	GACNNNNNGTC	1 cut(s)	771
EciI	GGCGGA	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	69
Eco130I	CCWWGG	2 cut(s)	226, 768
Eco24I	GRGCYC	2 cut(s)	71, 814
Eco47I	GGWCC	2 cut(s)	773, 797
Eco53kI	GAGCTC	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	698
Eco72I	CACGTG	1 cut(s)	870
Eco88I	CYCGRG	1 cut(s)	641
Eco91I	GGTNACC	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	69
EcoO65I	GGTNACC	1 cut(s)	786
EcoRI	GAATTC	2 cut(s)	231, 479
EcoRII	CCWGG	2 cut(s)	130, 243
EcoT14I	CCWWGG	2 cut(s)	226, 768
EcoT38I	GRGCYC	2 cut(s)	71, 814
ErhI	CCWWGG	2 cut(s)	226, 768
FaeI	CATG	4 cut(s)	283, 310, 515, 841
FatI	CATG	4 cut(s)	279, 306, 511, 837
FauI	CCCGC	1 cut(s)	623
FbaI	TGATCA	2 cut(s)	373, 514
Fnu4HI	GCNGC	5 cut(s)	174, 537, 707, 710, 874
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	2 cut(s)	71, 814
Fsp4HI	GCNGC	5 cut(s)	174, 537, 707, 710, 874
GlaI	GCGC	1 cut(s)	822
GluI	GCNGC	5 cut(s)	174, 537, 707, 710, 874
HaeIII	GGCC	1 cut(s)	646
HapII	CCGG	7 cut(s)	24, 455, 504, 671, 783, 791, 800
HhaI	GCGC	1 cut(s)	823
Hin1II	CATG	4 cut(s)	283, 310, 515, 841
Hin6I	GCGC	1 cut(s)	821
HinP1I	GCGC	1 cut(s)	821
HinfI	GANTC	8 cut(s)	74, 83, 140, 318, 470, 491, 725, 816
HpaII	CCGG	7 cut(s)	24, 455, 504, 671, 783, 791, 800
HphI	GGTGA	4 cut(s)	43, 307, 515, 780
Hpy166II	GTNNAC	2 cut(s)	94, 776
Hpy188I	TCNGA	7 cut(s)	66, 73, 79, 431, 469, 478, 678
Hpy188III	TCNNGA	3 cut(s)	280, 337, 671
Hpy8I	GTNNAC	2 cut(s)	94, 776
HpyAV	CCTTC	3 cut(s)	30, 231, 673
HpyCH4III	ACNGT	2 cut(s)	117, 271
HpyCH4IV	ACGT	1 cut(s)	869
HpyCH4V	TGCA	4 cut(s)	94, 173, 197, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 398, 818
HpySE526I	ACGT	1 cut(s)	869
Hsp92II	CATG	4 cut(s)	283, 310, 515, 841
HspAI	GCGC	1 cut(s)	821
Kpn2I	TCCGGA	1 cut(s)	670
Ksp22I	TGATCA	2 cut(s)	373, 514
Kzo9I	GATC	6 cut(s)	61, 127, 373, 514, 673, 749
LmnI	GCTCC	3 cut(s)	9, 66, 159
Lsp1109I	GCAGC	1 cut(s)	185
LweI	GCATC	2 cut(s)	303, 388
MaeII	ACGT	1 cut(s)	869
MaeIII	GTNAC	1 cut(s)	786
MalI	GATC	6 cut(s)	63, 129, 375, 516, 675, 751
MboI	GATC	6 cut(s)	61, 127, 373, 514, 673, 749
MboII	GAAGA	2 cut(s)	456, 775
MflI	RGATCY	2 cut(s)	127, 673
MhlI	GDGCHC	4 cut(s)	71, 96, 156, 814
MluCI	AATT	5 cut(s)	145, 231, 283, 479, 731
MlyI	GAGTC	7 cut(s)	68, 77, 312, 479, 485, 734, 810
MmeI	TCCRAC	3 cut(s)	105, 438, 454
MnlI	CCTC	9 cut(s)	17, 27, 437, 453, 484, 579, 582, 661, 713
MroI	TCCGGA	1 cut(s)	670
MseI	TTAA	3 cut(s)	266, 449, 879
MslI	CAYNNNNRTG	1 cut(s)	311
MspI	CCGG	7 cut(s)	24, 455, 504, 671, 783, 791, 800
MspR9I	CCNGG	4 cut(s)	132, 245, 784, 801
MvaI	CCWGG	2 cut(s)	132, 245
MvnI	CGCG	1 cut(s)	821
MwoI	GCNNNNNNNGC	3 cut(s)	10, 398, 818
NciI	CCSGG	2 cut(s)	784, 801
NdeII	GATC	6 cut(s)	61, 127, 373, 514, 673, 749
NlaIII	CATG	4 cut(s)	283, 310, 515, 841
NlaIV	GGNNCC	3 cut(s)	129, 242, 774
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	786
NspI	RCATGY	1 cut(s)	841
NspV	TTCGAA	2 cut(s)	143, 235
PagI	TCATGA	1 cut(s)	279
PciI	ACATGT	1 cut(s)	837
PcsI	WCGNNNNNNNCGW	1 cut(s)	592
PfeI	GAWTC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	409
PinAI	ACCGGT	1 cut(s)	790
PkrI	GCNGC	5 cut(s)	175, 538, 708, 711, 875
Ple19I	CGATCG	1 cut(s)	64
PleI	GAGTC	7 cut(s)	68, 77, 312, 478, 485, 733, 810
PmaCI	CACGTG	1 cut(s)	870
PmlI	CACGTG	1 cut(s)	870
PpsI	GAGTC	7 cut(s)	68, 77, 312, 478, 485, 733, 810
Ppu21I	YACGTR	1 cut(s)	870
PscI	ACATGT	1 cut(s)	837
Psp124BI	GAGCTC	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	130, 243
PspCI	CACGTG	1 cut(s)	870
PspEI	GGTNACC	1 cut(s)	786
PspGI	CCWGG	2 cut(s)	130, 243
PspN4I	GGNNCC	3 cut(s)	129, 242, 774
PspPI	GGNCC	3 cut(s)	644, 773, 797
PsuI	RGATCY	2 cut(s)	127, 673
PsyI	GACNNNGTC	1 cut(s)	409
PvuI	CGATCG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	3 cut(s)	266, 449, 879
SatI	GCNGC	5 cut(s)	174, 537, 707, 710, 874
Sau3AI	GATC	6 cut(s)	61, 127, 373, 514, 673, 749
Sau96I	GGNCC	3 cut(s)	644, 773, 797
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	7 cut(s)	68, 77, 312, 479, 485, 734, 810
ScrFI	CCNGG	4 cut(s)	132, 245, 784, 801
SduI	GDGCHC	4 cut(s)	71, 96, 156, 814
SfaNI	GCATC	2 cut(s)	303, 388
SfuI	TTCGAA	2 cut(s)	143, 235
SinI	GGWCC	2 cut(s)	773, 797
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	145, 231, 283, 479, 731
SsiI	CCGC	6 cut(s)	392, 537, 616, 707, 710, 874
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	4 cut(s)	130, 243, 782, 799
StyI	CCWWGG	2 cut(s)	226, 768
TaaI	ACNGT	2 cut(s)	117, 271
TaiI	ACGT	1 cut(s)	872
TaqI	TCGA	6 cut(s)	120, 143, 235, 336, 728, 814
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	5 cut(s)	145, 231, 283, 479, 731
TatI	WGTACW	1 cut(s)	112
TauI	GCSGC	4 cut(s)	539, 709, 712, 876
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	266, 449, 879
Tru9I	TTAA	3 cut(s)	266, 449, 879
TseFI	GTSAC	1 cut(s)	786
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	786
TspDTI	ATGAA	4 cut(s)	123, 233, 268, 296
Tth111I	GACNNNGTC	1 cut(s)	409
VneI	GTGCAC	1 cut(s)	92
VpaK11BI	GGWCC	2 cut(s)	773, 797
XapI	RAATTY	3 cut(s)	231, 283, 479
XceI	RCATGY	1 cut(s)	841
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.