Rroxscaffold_3G00237870

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
25586210 .. 25586728
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237870.1

Sequence Viewer

Length: 420 bp
ATGATTGCGAGCCAGCAATGGAGACAAAATGTCGCGCCACCTCCTTCGGGTTCGTCAAACATACAGAACCAACTCACCACCATCGACCAAAACTCGGACTCGGACGACTCGGTGTCTTTGTGGAGTGAGTTGATCACCGGCTTGGACTCGAACGACTCGTTGTGTTGTAGAGTGAGTTTGATCACCAACTCGGACTCGTTTGAGTTGAGGGTTCAAGATGTAGGAGAAGGCGGTGTAAAGATCAAGCCATTTGATGTGGAGAGCAGATCACAAACGGGGTATGTTGATTTTGGTCGATTTGACAAGTTCAACCACTTTATTTCTGGTTTAGGGCATGTAGATTTTGTTCAAGTGTTTTACAATGGTGATCTGGTGAATTGTGAATGGAGTTATGATAAATGGGGCGAACAGCTCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.53

Weight (kDa)

4.27

Isoelectric Point (pI)

37.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 47, 94
AgsI TTSAA 3 cut(s) 215, 310, 350
AhdI GACNNNNNGTC 2 cut(s) 29, 112
AluBI AGCT 1 cut(s) 412
AluI AGCT 1 cut(s) 412
Alw26I GTCTC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 413
AspLEI GCGC 1 cut(s) 37
AsuHPI GGTGA 5 cut(s) 67, 127, 175, 377, 385
AvaI CYCGRG 1 cut(s) 413
BccI CCATC 1 cut(s) 89
BclI TGATCA 2 cut(s) 132, 180
BcoDI GTCTC 1 cut(s) 16
BmeRI GACNNNNNGTC 2 cut(s) 29, 112
BmeT110I CYCGRG 1 cut(s) 413
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 94
Bse118I RCCGGY 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 23
BseLI CCNNNNNNNGG 2 cut(s) 47, 94
BseMI GCAATG 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 35
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 1 cut(s) 138
BslI CCNNNNNNNGG 2 cut(s) 47, 94
BsmAI GTCTC 1 cut(s) 16
BsoBI CYCGRG 1 cut(s) 413
Bsp143I GATC 5 cut(s) 132, 180, 240, 266, 367
BspACI CCGC 1 cut(s) 231
BspFNI CGCG 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 137
BssMI GATC 5 cut(s) 132, 180, 240, 266, 367
BstC8I GCNNGC 2 cut(s) 10, 14
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 5 cut(s) 135, 183, 243, 269, 370
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 5 cut(s) 132, 180, 240, 266, 367
BstNSI RCATGY 1 cut(s) 338
BstUI CGCG 1 cut(s) 35
Cac8I GCNNGC 2 cut(s) 10, 14
CfoI GCGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 137
CviAII CATG 1 cut(s) 335
CviJI RGCY 4 cut(s) 12, 141, 247, 412
CviKI_1 RGCY 4 cut(s) 12, 141, 247, 412
DpnI GATC 5 cut(s) 134, 182, 242, 268, 369
DpnII GATC 5 cut(s) 132, 180, 240, 266, 367
DriI GACNNNNNGTC 2 cut(s) 29, 112
Eam1105I GACNNNNNGTC 2 cut(s) 29, 112
Eco88I CYCGRG 1 cut(s) 413
FaeI CATG 1 cut(s) 338
FaiI YATR 4 cut(s) 62, 282, 336, 393
FatI CATG 1 cut(s) 334
FbaI TGATCA 2 cut(s) 132, 180
GlaI GCGC 1 cut(s) 36
HapII CCGG 1 cut(s) 138
HhaI GCGC 1 cut(s) 37
Hin1II CATG 1 cut(s) 338
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 5 cut(s) 98, 107, 146, 155, 194
HpaII CCGG 1 cut(s) 138
HphI GGTGA 5 cut(s) 67, 127, 175, 377, 385
Hpy188I TCNGA 3 cut(s) 97, 103, 193
Hpy188III TCNNGA 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 54, 221
Hsp92II CATG 1 cut(s) 338
HspAI GCGC 1 cut(s) 35
Ksp22I TGATCA 2 cut(s) 132, 180
Kzo9I GATC 5 cut(s) 132, 180, 240, 266, 367
LpnPI CCDG 4 cut(s) 26, 151, 309, 356
MalI GATC 5 cut(s) 134, 182, 242, 268, 369
MboI GATC 5 cut(s) 132, 180, 240, 266, 367
MluCI AATT 1 cut(s) 376
MlyI GAGTC 5 cut(s) 92, 101, 140, 149, 188
MnlI CCTC 2 cut(s) 51, 201
MspI CCGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 35
NdeII GATC 5 cut(s) 132, 180, 240, 266, 367
NlaIII CATG 1 cut(s) 338
NspI RCATGY 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PleI GAGTC 5 cut(s) 92, 101, 140, 149, 188
PpsI GAGTC 5 cut(s) 92, 101, 140, 149, 188
PsrI GAACNNNNNNTAC 2 cut(s) 330, 362
Sau3AI GATC 5 cut(s) 132, 180, 240, 266, 367
SchI GAGTC 5 cut(s) 92, 101, 140, 149, 188
SetI ASST 2 cut(s) 43, 414
Sse9I AATT 1 cut(s) 376
SsiI CCGC 1 cut(s) 231
TaqI TCGA 3 cut(s) 84, 149, 295
TasI AATT 1 cut(s) 376
XceI RCATGY 1 cut(s) 338
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.