Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0017862

Physical Location & Seq

Genomic Coordinates Reverse (-)

35958857 .. 35959362

Gene Structure 506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGCCATCGCCGGAGCCGGAAGCTCCCCAACTCTTCAATCACCTACAACGTCTTCCATTGCTTCTATGGCCCGGTCAAGTTCATAGCAGCTGTCCAATCCATCAAGGTTTCGTTATGGCCGGTATTGGAGTGCGAATTTGATCCAAGGAATGCGAGGGGTGGCCTTGTCTTTGATGGTGTTTTTTTGGGGGGGGCGTTGACCGGGATCCTGGGGTTACGCGCCGGTTTCGGAGCCGGGTTTTGGATGGGGCCACCGATGGGCGGAAGAATTGGAAGATTTTGGCATTACTCCTTCACCATGCTAATTGCAGGTGCTTGCCGGGATCGAATTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

112

Amino Acids

12.35

Weight (kDa)

10.29

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017862)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00004850 Rroxscaffold_1G00028960 Rroxscaffold_2G00103200 Rroxscaffold_2G00120180 Rroxscaffold_3G00237870 Rroxscaffold_3G00239580 Rroxscaffold_3G00267700 Rroxscaffold_4G00320220 Rroxscaffold_5G00354610 Rroxscaffold_6G00391490 Rroxscaffold_7G00179660 Rroxscaffold_7G00194190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	302
AccII	CGCG	1 cut(s)	222
AciI	CCGC	1 cut(s)	264
AclWI	GGATC	4 cut(s)	137, 202, 215, 333
AcoI	YGGCCR	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	243, 260, 263
AgsI	TTSAA	1 cut(s)	39
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	25, 92
AluI	AGCT	2 cut(s)	25, 92
AlwI	GGATC	4 cut(s)	137, 202, 215, 333
AoxI	GGCC	5 cut(s)	4, 70, 119, 163, 251
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	3 cut(s)	4, 71, 251
AsuC2I	CCSGG	4 cut(s)	74, 205, 238, 323
AsuHPI	GGTGA	2 cut(s)	34, 289
BamHI	GGATCC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	5 cut(s)	15, 110, 170, 241, 253
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	4 cut(s)	74, 205, 238, 323
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	5 cut(s)	74, 205, 212, 238, 323
BmgT120I	GGNCC	3 cut(s)	4, 71, 251
BmiI	GGNNCC	4 cut(s)	17, 209, 235, 252
BmrFI	CCNGG	5 cut(s)	74, 205, 212, 238, 323
BpiI	GAAGAC	1 cut(s)	46
BpuMI	CCSGG	4 cut(s)	74, 205, 238, 323
BsaJI	CCNNGG	2 cut(s)	146, 211
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 260, 263
Bse118I	RCCGGY	2 cut(s)	121, 224
Bse3DI	GCAATG	1 cut(s)	58
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	146, 211
BseGI	GGATG	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	243, 260, 263
BseMI	GCAATG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	5 cut(s)	6, 72, 121, 165, 253
BsiSI	CCGG	8 cut(s)	13, 19, 74, 122, 204, 225, 237, 322
BslI	CCNNNNNNNGG	3 cut(s)	243, 260, 263
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	5 cut(s)	6, 72, 121, 165, 253
Bsp143I	GATC	3 cut(s)	142, 207, 325
BspACI	CCGC	1 cut(s)	264
BspANI	GGCC	5 cut(s)	6, 72, 121, 165, 253
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	17, 209, 235, 252
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	4 cut(s)	137, 202, 215, 333
BsrDI	GCAATG	1 cut(s)	58
BsrFI	RCCGGY	2 cut(s)	121, 224
BssAI	RCCGGY	2 cut(s)	121, 224
BssECI	CCNNGG	2 cut(s)	146, 211
BssMI	GATC	3 cut(s)	142, 207, 325
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	3 cut(s)	145, 210, 328
BstMBI	GATC	3 cut(s)	142, 207, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	212
BstSCI	CCNGG	5 cut(s)	72, 203, 210, 236, 321
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	46
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
BsuRI	GGCC	5 cut(s)	6, 72, 121, 165, 253
BtsCI	GGATG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	319
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	2 cut(s)	121, 224
Cfr13I	GGNCC	3 cut(s)	4, 71, 251
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	9 cut(s)	6, 18, 25, 72, 92, 121, 165, 236, 253
CviKI_1	RGCY	9 cut(s)	6, 18, 25, 72, 92, 121, 165, 236, 253
DpnI	GATC	3 cut(s)	144, 209, 327
DpnII	GATC	3 cut(s)	142, 207, 325
EaeI	YGGCCR	1 cut(s)	119
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	279
Eco130I	CCWWGG	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	1 cut(s)	304
FaiI	YATR	4 cut(s)	69, 86, 118, 302
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	1 cut(s)	90
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	1 cut(s)	90
HaeIII	GGCC	5 cut(s)	6, 72, 121, 165, 253
HapII	CCGG	8 cut(s)	13, 19, 74, 122, 204, 225, 237, 322
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HpaII	CCGG	8 cut(s)	13, 19, 74, 122, 204, 225, 237, 322
HphI	GGTGA	2 cut(s)	34, 289
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	233
Hpy8I	GTNNAC	1 cut(s)	201
HpyAV	CCTTC	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	3 cut(s)	142, 207, 325
LmnI	GCTCC	3 cut(s)	15, 30, 233
Lsp1109I	GCAGC	1 cut(s)	101
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	3 cut(s)	144, 209, 327
MboI	GATC	3 cut(s)	142, 207, 325
MboII	GAAGA	4 cut(s)	27, 46, 279, 288
MflI	RGATCY	1 cut(s)	207
MluCI	AATT	4 cut(s)	137, 270, 306, 330
MnlI	CCTC	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	92
MspI	CCGG	8 cut(s)	13, 19, 74, 122, 204, 225, 237, 322
MspR9I	CCNGG	5 cut(s)	74, 205, 212, 238, 323
Mva1269I	GAATGC	1 cut(s)	157
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	4 cut(s)	74, 205, 238, 323
NdeII	GATC	3 cut(s)	142, 207, 325
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	4 cut(s)	17, 209, 235, 252
PaqCI	CACCTGC	1 cut(s)	302
PctI	GAATGC	1 cut(s)	157
PkrI	GCNGC	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	4 cut(s)	17, 209, 235, 252
PspPI	GGNCC	3 cut(s)	4, 71, 251
PsuI	RGATCY	1 cut(s)	207
PvuII	CAGCTG	1 cut(s)	92
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	3 cut(s)	142, 207, 325
Sau96I	GGNCC	3 cut(s)	4, 71, 251
ScrFI	CCNGG	5 cut(s)	74, 205, 212, 238, 323
SetI	ASST	6 cut(s)	27, 47, 54, 94, 111, 316
Sse9I	AATT	4 cut(s)	137, 270, 306, 330
SsiI	CCGC	1 cut(s)	264
StyD4I	CCNGG	5 cut(s)	72, 203, 210, 236, 321
StyI	CCWWGG	1 cut(s)	146
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	328
TasI	AATT	4 cut(s)	137, 270, 306, 330
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	73
XapI	RAATTY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.