Rroxscaffold_2G00103200

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
25659161 .. 25668515
9355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103200.1

Sequence Viewer

Length: 228 bp
ATGCTCCTCGTACCTCCTCCTTCCGGTTCGTCAAACTTACAGAACCAACTCACCACCACCGATCGCAGCTCGGACTCGACGACTCAGCTGTGGCAAGAGATTGCATACCTTCCTAATATGGACATTATAATTTATCGCATAGTTGCGAGTTGTCACTATAATGAGACAATCCTCCCGCCATTAGGGGAAGAAGCAACTCTACTCATAGTTTGCATTACCGAAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.33

Weight (kDa)

4.12

Isoelectric Point (pI)

69.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AciI CCGC 1 cut(s) 176
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 23, 182
AluBI AGCT 2 cut(s) 69, 88
AluI AGCT 2 cut(s) 69, 88
Alw26I GTCTC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 66
AsuHPI GGTGA 1 cut(s) 43
BarI GAAGNNNNNNTAC 2 cut(s) 183, 215
BbvI GCAGC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 158
BfaI CTAG 1 cut(s) 226
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 182
BseLI CCNNNNNNNGG 2 cut(s) 23, 182
BseMII CTCAG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 2 cut(s) 23, 182
BsmAI GTCTC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 97
BssMI GATC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 84
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 61
BstMCI CGRYCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 11
CviJI RGCY 2 cut(s) 69, 88
CviKI_1 RGCY 2 cut(s) 69, 88
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
FaiI YATR 6 cut(s) 106, 119, 128, 140, 159, 206
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 226
GluI GCNGC 1 cut(s) 67
HapII CCGG 1 cut(s) 24
HinfI GANTC 2 cut(s) 74, 82
HpaII CCGG 1 cut(s) 24
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 30, 119
HpyCH4V TGCA 2 cut(s) 104, 213
HpyF3I CTNAG 1 cut(s) 84
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 78
MaeI CTAG 1 cut(s) 226
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 1 cut(s) 200
MluCI AATT 1 cut(s) 129
MlyI GAGTC 2 cut(s) 68, 76
MnlI CCTC 4 cut(s) 17, 24, 27, 182
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 1 cut(s) 24
NdeII GATC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 152
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PkrI GCNGC 1 cut(s) 68
Ple19I CGATCG 1 cut(s) 64
PleI GAGTC 2 cut(s) 68, 76
PpsI GAGTC 2 cut(s) 68, 76
PsiI TTATAA 1 cut(s) 128
PvuI CGATCG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 88
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 159
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 1 cut(s) 61
SchI GAGTC 2 cut(s) 68, 76
SetI ASST 4 cut(s) 16, 71, 90, 111
SgeI CNNG 7 cut(s) 20, 36, 82, 88, 107, 159, 187
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 176
SspMI CTAG 1 cut(s) 226
TaqI TCGA 1 cut(s) 77
TasI AATT 1 cut(s) 129
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 66
Tsp45I GTSAC 1 cut(s) 152
XspI CTAG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.