Rroxscaffold_5G00354610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017862
Physical Location & Seq
Forward (+)
33095192 .. 33101475
6284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354610.1

Sequence Viewer

Length: 279 bp
ATGTGTGGGCAAGTTTATTCTCCTGCTCAACTTGCTAGATTGAAAAGAGCATTGGTATCCGAGCTTTCGGTTTCAATGGGGCAGAGTTTTCGTGCAGAAGGTCAAGCTTTTCGTGATCTCCGGGGCACATACTCATCCGGAGATTTGGGGCAGTTGAGAGTTCAAGATGTAGGAGACGGCGGTGTAAAGATCAAGCCTTATGACGTGGAGAGCTCTCAAGCACTTCTTCGGCGGGCGGTGGGCGTTTTCACTTCACGGACTTTCCTAAGTCTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

92

Amino Acids

10.01

Weight (kDa)

9.89

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 137
AciI CCGC 3 cut(s) 180, 232, 236
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 3 cut(s) 43, 75, 164
AjiI CACGTC 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 3 cut(s) 64, 107, 213
AluI AGCT 3 cut(s) 64, 107, 213
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 168
Aor13HI TCCGGA 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BciVI GTATCC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 272
BfuI GTATCC 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 137
BseAI TCCGGA 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 128
BsgI GTGCAG 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 2 cut(s) 121, 138
BsmAI GTCTC 1 cut(s) 168
BsmBI CGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 128, 215
Bsp13I TCCGGA 1 cut(s) 137
Bsp143I GATC 2 cut(s) 115, 189
BspACI CCGC 3 cut(s) 180, 232, 236
BspEI TCCGGA 1 cut(s) 137
BspTI CTTAAG 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 2 cut(s) 115, 189
BstAFI CTTAAG 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 2 cut(s) 118, 192
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 115, 189
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 120
BstSLI GKGCMC 1 cut(s) 128
BsuI GTATCC 1 cut(s) 67
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 234
CviJI RGCY 4 cut(s) 64, 107, 196, 213
CviKI_1 RGCY 4 cut(s) 64, 107, 196, 213
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 117, 191
DpnII GATC 2 cut(s) 115, 189
Ecl136II GAGCTC 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 168
FaiI YATR 2 cut(s) 130, 201
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FauI CCCGC 1 cut(s) 225
FokI GGATG 1 cut(s) 121
FriOI GRGCYC 1 cut(s) 215
FspBI CTAG 1 cut(s) 36
HapII CCGG 2 cut(s) 121, 138
HindIII AAGCTT 1 cut(s) 105
HpaII CCGG 2 cut(s) 121, 138
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 3 cut(s) 113, 138, 164
HpyAV CCTTC 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 204
Kpn2I TCCGGA 1 cut(s) 137
Kzo9I GATC 2 cut(s) 115, 189
LpnPI CCDG 3 cut(s) 36, 134, 151
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 204
MalI GATC 2 cut(s) 117, 191
MboI GATC 2 cut(s) 115, 189
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 2 cut(s) 128, 215
MroI TCCGGA 1 cut(s) 137
MseI TTAA 1 cut(s) 273
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 2 cut(s) 121, 138
MspR9I CCNGG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 122
NdeII GATC 2 cut(s) 115, 189
Psp124BI GAGCTC 1 cut(s) 215
SacI GAGCTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 273
Sau3AI GATC 2 cut(s) 115, 189
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 2 cut(s) 128, 215
SetI ASST 5 cut(s) 66, 103, 109, 207, 215
SmlI CTYRAG 2 cut(s) 216, 272
SmoI CTYRAG 2 cut(s) 216, 272
SsiI CCGC 3 cut(s) 180, 232, 236
SspMI CTAG 1 cut(s) 36
SstI GAGCTC 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 120
TaiI ACGT 1 cut(s) 207
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TspGWI ACGGA 1 cut(s) 271
Vha464I CTTAAG 1 cut(s) 272
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.