Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004790

Physical Location & Seq

Genomic Coordinates Reverse (-)

32712153 .. 32718688

Gene Structure 6536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGCTTCTACTACAAGGATTCAAAAAGTGCCAGCGGAGTGGTTCTTGACGCGCCCGAGGCTAGCAAGCTTTTAAGTGCAGCTGCAATTGCTTTATCAAATTGTTCAAGTTTGTGGCCCGCATTTGTCCCGGAGAGGCAGTCAAAATTTGTGAGGACTTGGAATTATGGGATGAATACTTGGAAATTGGTCAAGGACGTTAAACCGAGGCTACCAAGGAGAGGATTTGGGAAAAGACTCGAACGTGTACGCTTGGAATTGGACGAATGGTATCAAAGTTGTGCAGTTTTGGTGGAGGATGTCGGCATAGCCTCATACATAGTACAGCAGAGAAGCTATGGTTGGAGCTTCACCGTCATCACCGCATTTGAAGAGCGCCCGCTATCGAATCGAACAAGTAGTACAATTGTTAGTGTGGCCAGTTCTGCAATTCGGATTTGGATATGGCGATTTCGCTGTGAGGTTTCGTCGTCGTCCAAGTTGTTGATCAAAGGAGGGACTGTAGTGAATGCCCACCACATGGAGATTGCTGATGTTTATGTGGAGGATGGAATCATTGTTCTTTGTCCCCCAATATCAAGGTTGGTGATGATGTTACCGTGCTTGATGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00240 ko00410 ko00770 ko00983 ko01100 map00240 map00410 map00770 map00983 map01100

Pfam Domains

Protein Families

Amidohydro_1

Protein Analysis

204

Amino Acids

23.09

Weight (kDa)

9.4

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58510 AT5G58510
fragaria_vesca	FvH4_3g39400 FvH4_3g39400 FvH4_3g39400 FvH4_3g39400
malus_domestica	MD11G1065500.v1.1
prunus_persica	Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1
pyrus_communis	pycom11g05550
rosa_chinensis	RchiOBHm_Chr5g0070931
rosa_laevigata	RLG00000036172
rosa_multiflora	Rmu_sc0006203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010270 Rroxscaffold_1G00026030 Rroxscaffold_3G00223950 Rroxscaffold_4G00311860 Rroxscaffold_5G00336150 Rroxscaffold_5G00336440 Rroxscaffold_6G00388970 Rroxscaffold_6G00423050
rosa_rugosa	Rorug05G0408600 Rorug05G0408700
rosa_samantha	Rh5AG464800 Rh5BG483500 Rh5CG508200 Rh5DG495100
rosa_wichuraiana	Rw5G043240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	520
AccII	CGCG	1 cut(s)	53
AciI	CCGC	5 cut(s)	36, 120, 363, 380, 610
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	146
AfaI	GTAC	3 cut(s)	249, 324, 403
AfiI	CCNNNNNNNGG	2 cut(s)	221, 520
AflIII	ACRYGT	1 cut(s)	244
AgsI	TTSAA	3 cut(s)	24, 108, 371
AjuI	GAANNNNNNNTTGG	2 cut(s)	325, 357
AloI	GAACNNNNNNTCC	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	6, 70, 83, 336, 348
AluI	AGCT	5 cut(s)	6, 70, 83, 336, 348
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	2 cut(s)	116, 417
ApeKI	GCWGC	2 cut(s)	80, 83
ApoI	RAATTY	1 cut(s)	146
AspLEI	GCGC	2 cut(s)	55, 378
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	131
AsuHPI	GGTGA	3 cut(s)	343, 352, 598
AsuNHI	GCTAGC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	419
BbvI	GCAGC	2 cut(s)	70, 92
BccI	CCATC	1 cut(s)	542
BclI	TGATCA	1 cut(s)	486
BcnI	CCSGG	1 cut(s)	131
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	379
BisI	GCNGC	2 cut(s)	81, 84
BlsI	GCNGC	2 cut(s)	82, 85
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	597
BmtI	GCTAGC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	131
BsaJI	CCNNGG	3 cut(s)	57, 206, 215
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 486, 516
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 520
Bse1I	ACTGG	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	57, 206, 215
BseGI	GGATG	3 cut(s)	177, 304, 553
BseLI	CCNNNNNNNGG	2 cut(s)	221, 520
BseNI	ACTGG	1 cut(s)	420
BseXI	GCAGC	2 cut(s)	70, 92
BsgI	GTGCAG	2 cut(s)	99, 303
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	118, 419
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	3 cut(s)	113, 511, 552
BslI	CCNNNNNNNGG	2 cut(s)	221, 520
BsmFI	GGGAC	3 cut(s)	113, 511, 552
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	2 cut(s)	118, 419
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	486
BspACI	CCGC	5 cut(s)	36, 120, 363, 380, 610
BspANI	GGCC	2 cut(s)	118, 419
BspFNI	CGCG	1 cut(s)	53
BspOI	GCTAGC	1 cut(s)	66
BspQI	GCTCTTC	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	3 cut(s)	57, 206, 215
BssMI	GATC	1 cut(s)	486
BssT1I	CCWWGG	1 cut(s)	215
Bst4CI	ACNGT	3 cut(s)	355, 502, 600
Bst6I	CTCTTC	1 cut(s)	366
BstC8I	GCNNGC	5 cut(s)	34, 64, 68, 120, 380
BstF5I	GGATG	3 cut(s)	177, 304, 553
BstFNI	CGCG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	2 cut(s)	55, 378
BstKTI	GATC	1 cut(s)	489
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 89, 425
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	70, 92
BstXI	CCANNNNNNTGG	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	118, 419
BtsCI	GGATG	3 cut(s)	177, 304, 553
Cac8I	GCNNGC	5 cut(s)	34, 64, 68, 120, 380
CfoI	GCGC	2 cut(s)	55, 378
Cfr13I	GGNCC	1 cut(s)	117
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	3 cut(s)	248, 323, 402
CviAII	CATG	1 cut(s)	520
CviQI	GTAC	3 cut(s)	248, 323, 402
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	56
EcoT14I	CCWWGG	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	1 cut(s)	523
FaiI	YATR	8 cut(s)	168, 308, 316, 320, 339, 445, 521, 540
FaqI	GGGAC	3 cut(s)	113, 511, 552
FatI	CATG	1 cut(s)	519
FauI	CCCGC	2 cut(s)	127, 387
FbaI	TGATCA	1 cut(s)	486
Fnu4HI	GCNGC	2 cut(s)	81, 84
FokI	GGATG	3 cut(s)	184, 311, 560
Fsp4HI	GCNGC	2 cut(s)	81, 84
FspBI	CTAG	1 cut(s)	63
GlaI	GCGC	2 cut(s)	54, 377
GluI	GCNGC	2 cut(s)	81, 84
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	118, 419
HapII	CCGG	1 cut(s)	131
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	55, 378
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	2 cut(s)	53, 376
HinP1I	GCGC	2 cut(s)	53, 376
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	4 cut(s)	20, 237, 388, 552
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	3 cut(s)	343, 352, 598
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	248
Hpy99I	CGWCG	2 cut(s)	472, 475
HpyCH4III	ACNGT	3 cut(s)	355, 502, 600
HpyCH4IV	ACGT	2 cut(s)	198, 244
HpyCH4V	TGCA	4 cut(s)	80, 86, 284, 428
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 89, 425
HpySE526I	ACGT	2 cut(s)	198, 244
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	2 cut(s)	53, 376
Ksp22I	TGATCA	1 cut(s)	486
Kzo9I	GATC	1 cut(s)	486
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	1 cut(s)	345
LpnPI	CCDG	3 cut(s)	46, 144, 433
Lsp1109I	GCAGC	2 cut(s)	70, 92
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	1 cut(s)	63
MaeII	ACGT	2 cut(s)	198, 244
MaeIII	GTNAC	1 cut(s)	594
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	1 cut(s)	383
MfeI	CAATTG	2 cut(s)	87, 405
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	8 cut(s)	87, 100, 146, 163, 185, 257, 405, 429
MluNI	TGGCCA	1 cut(s)	419
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	323
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	2 cut(s)	74, 201
Msp20I	TGGCCA	1 cut(s)	419
MspA1I	CMGCKG	2 cut(s)	36, 83
MspI	CCGG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	2 cut(s)	87, 405
Mva1269I	GAATGC	1 cut(s)	514
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	59, 89, 425
NciI	CCSGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	486
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	1 cut(s)	523
PciSI	GCTCTTC	1 cut(s)	366
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	3 cut(s)	20, 388, 552
PflMI	CCANNNNNTGG	1 cut(s)	520
PfoI	TCCNGGA	1 cut(s)	129
PkrI	GCNGC	2 cut(s)	82, 85
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	117
PsrI	GAACNNNNNNTAC	2 cut(s)	385, 417
PvuII	CAGCTG	1 cut(s)	83
RsaI	GTAC	3 cut(s)	249, 324, 403
RsaNI	GTAC	3 cut(s)	248, 323, 402
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	74, 201
SatI	GCNGC	2 cut(s)	81, 84
Sau3AI	GATC	1 cut(s)	486
Sau96I	GGNCC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	9 cut(s)	8, 72, 85, 201, 247, 338, 350, 465, 584
SfaNI	GCATC	1 cut(s)	597
SfcI	CTRYAG	1 cut(s)	501
Sse9I	AATT	8 cut(s)	87, 100, 146, 163, 185, 257, 405, 429
SsiI	CCGC	5 cut(s)	36, 120, 363, 380, 610
SspMI	CTAG	1 cut(s)	63
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	3 cut(s)	355, 502, 600
TaiI	ACGT	2 cut(s)	201, 247
TaqI	TCGA	3 cut(s)	240, 386, 391
TasI	AATT	8 cut(s)	87, 100, 146, 163, 185, 257, 405, 429
TatI	WGTACW	2 cut(s)	322, 401
TfiI	GAWTC	3 cut(s)	20, 388, 552
Tru1I	TTAA	2 cut(s)	74, 201
Tru9I	TTAA	2 cut(s)	74, 201
TseI	GCWGC	2 cut(s)	80, 83
TspDTI	ATGAA	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	146
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.