Rroxscaffold_5G00336150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004790
Physical Location & Seq
Forward (+)
3863364 .. 3869157
5794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336150.1

Sequence Viewer

Length: 339 bp
ATGATGTGCAAAGAAATTGTTAAGAGTCCCGAGATCTGCGGGAAGCTTATTTTTCCAGTTTCACCGAAGCGCCGTGTCCACGGGATGGACTCGTTCGTCCTCTCTTTCGCACACCCTCCGAAGAACGAGAGAGACCATCAGCCCCGGCCACCTCCTCCACCGCACACCACCATCAAAAATCCGAACCGATTTCCGATCAAAAACTCAAACCATGAGGCCAAGTCTTTTTGTTCTTCAAGTTGGCCATTGCGAACTGAAACGGAACTCCATCGCATTCTGCCCGACGTTGACTTCTACTCCCACCTCAACTCCGGCATTAAAGCTCCACAGGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.8

Weight (kDa)

9.37

Isoelectric Point (pI)

57.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AccB7I CCANNNNNTGG 1 cut(s) 85
AciI CCGC 2 cut(s) 39, 161
AcoI YGGCCR 2 cut(s) 146, 242
AfiI CCNNNNNNNGG 1 cut(s) 85
AgsI TTSAA 1 cut(s) 237
AluBI AGCT 3 cut(s) 46, 323, 335
AluI AGCT 3 cut(s) 46, 323, 335
Alw26I GTCTC 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 3 cut(s) 146, 216, 242
AspLEI GCGC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 54
AvaI CYCGRG 1 cut(s) 29
BalI TGGCCA 1 cut(s) 244
BccI CCATC 4 cut(s) 79, 144, 179, 276
BceAI ACGGC 1 cut(s) 57
BcnI CCSGG 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 73
BglII AGATCT 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 145
BpuMI CCSGG 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 79, 143
BsaXI ACNNNNNCTCC 4 cut(s) 281, 293, 311, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 245
BseDI CCNNGG 2 cut(s) 79, 143
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 144
BshFI GGCC 3 cut(s) 148, 218, 244
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 2 cut(s) 145, 312
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 273
BsnI GGCC 3 cut(s) 148, 218, 244
Bso31I GGTCTC 1 cut(s) 126
BsoBI CYCGRG 1 cut(s) 29
Bsp143I GATC 2 cut(s) 33, 195
BspACI CCGC 2 cut(s) 39, 161
BspANI GGCC 3 cut(s) 148, 218, 244
BspTNI GGTCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 245
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 79, 143
BssMI GATC 2 cut(s) 33, 195
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 2 cut(s) 36, 198
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 2 cut(s) 33, 195
BstSCI CCNGG 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 3 cut(s) 148, 218, 244
BtgI CCRYGG 1 cut(s) 79
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 90
CfoI GCGC 1 cut(s) 72
CviAII CATG 1 cut(s) 212
CviJI RGCY 7 cut(s) 46, 142, 148, 218, 244, 323, 335
CviKI_1 RGCY 7 cut(s) 46, 142, 148, 218, 244, 323, 335
DdeI CTNAG 1 cut(s) 336
DpnI GATC 2 cut(s) 35, 197
DpnII GATC 2 cut(s) 33, 195
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 2 cut(s) 146, 242
Eco31I GGTCTC 1 cut(s) 126
Eco88I CYCGRG 1 cut(s) 29
FaeI CATG 1 cut(s) 215
FaiI YATR 1 cut(s) 213
FaqI GGGAC 1 cut(s) 12
FatI CATG 1 cut(s) 211
FauI CCCGC 1 cut(s) 32
FokI GGATG 1 cut(s) 97
GlaI GCGC 1 cut(s) 71
HaeII RGCGCY 1 cut(s) 73
HaeIII GGCC 3 cut(s) 148, 218, 244
HapII CCGG 2 cut(s) 145, 312
HhaI GCGC 1 cut(s) 72
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HindIII AAGCTT 2 cut(s) 44, 333
HinfI GANTC 2 cut(s) 25, 89
HpaII CCGG 2 cut(s) 145, 312
HphI GGTGA 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 79, 289
Hpy188I TCNGA 3 cut(s) 120, 183, 195
Hpy188III TCNNGA 1 cut(s) 29
Hpy8I GTNNAC 2 cut(s) 79, 289
Hpy99I CGWCG 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 1 cut(s) 9
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 2 cut(s) 33, 195
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 4 cut(s) 69, 158, 314, 325
MaeII ACGT 1 cut(s) 285
MalI GATC 2 cut(s) 35, 197
MboI GATC 2 cut(s) 33, 195
MboII GAAGA 2 cut(s) 133, 225
MflI RGATCY 1 cut(s) 33
MlsI TGGCCA 1 cut(s) 244
MluCI AATT 1 cut(s) 15
MluNI TGGCCA 1 cut(s) 244
MlyI GAGTC 2 cut(s) 34, 83
MnlI CCTC 6 cut(s) 110, 126, 162, 165, 208, 314
Mox20I TGGCCA 1 cut(s) 244
MscI TGGCCA 1 cut(s) 244
MseI TTAA 2 cut(s) 21, 318
Msp20I TGGCCA 1 cut(s) 244
MspI CCGG 2 cut(s) 145, 312
MspR9I CCNGG 1 cut(s) 145
Mva1269I GAATGC 1 cut(s) 273
NciI CCSGG 1 cut(s) 145
NdeII GATC 2 cut(s) 33, 195
NlaIII CATG 1 cut(s) 215
PctI GAATGC 1 cut(s) 273
PflMI CCANNNNNTGG 1 cut(s) 85
PleI GAGTC 2 cut(s) 33, 83
PpsI GAGTC 2 cut(s) 33, 83
PsuI RGATCY 1 cut(s) 33
SaqAI TTAA 2 cut(s) 21, 318
Sau3AI GATC 2 cut(s) 33, 195
SchI GAGTC 2 cut(s) 34, 83
ScrFI CCNGG 1 cut(s) 145
SetI ASST 6 cut(s) 48, 154, 288, 306, 325, 337
Sse9I AATT 1 cut(s) 15
SsiI CCGC 2 cut(s) 39, 161
StyD4I CCNGG 1 cut(s) 143
TaiI ACGT 1 cut(s) 288
TasI AATT 1 cut(s) 15
Tru1I TTAA 2 cut(s) 21, 318
Tru9I TTAA 2 cut(s) 21, 318
TspGWI ACGGA 1 cut(s) 275
Van91I CCANNNNNTGG 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.