Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004790

Physical Location & Seq

Genomic Coordinates Forward (+)

4234576 .. 4234949

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00336440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGATGGCCGACGGTCCGAAAAATCTGTTGAAAAAGGATGCAAGGGAGGTTTCGAGGAGTTTTATAAGGTTAAATATGAGTTGAAGTTTGCAGTGAAAATTGTGCTTTGGGGTCAAAGATTTTTGGTAATTGCTCCACAAAGTGCTCGCGGAGTGGTTCTTGACGCGCCCGAGGCTAGCAAGCTTTTAAGTGCAGCTGCAATTGCTTTATCAAATTGTTCAAGTTTGTGGCCCGCATTTGTCCCAGTGCATGTTCCTGCTAGGAAAGCTTACATTGGTATACGAATATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rab3-GTPase_cat

Protein Analysis

97

Amino Acids

10.75

Weight (kDa)

9.74

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58510 AT5G58510
fragaria_vesca	FvH4_3g39400 FvH4_3g39400 FvH4_3g39400 FvH4_3g39400
malus_domestica	MD11G1065500.v1.1
prunus_persica	Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1
pyrus_communis	pycom11g05550
rosa_chinensis	RchiOBHm_Chr5g0070931
rosa_laevigata	RLG00000036172
rosa_multiflora	Rmu_sc0006203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010270 Rroxscaffold_1G00026030 Rroxscaffold_3G00223950 Rroxscaffold_4G00311860 Rroxscaffold_5G00336150 Rroxscaffold_5G00336440 Rroxscaffold_6G00388970 Rroxscaffold_6G00423050
rosa_rugosa	Rorug05G0408600 Rorug05G0408700
rosa_samantha	Rh5AG464800 Rh5BG483500 Rh5CG508200 Rh5DG495100
rosa_wichuraiana	Rw5G043240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	66
AccI	GTMKAC	1 cut(s)	280
AccII	CGCG	2 cut(s)	150, 167
AciI	CCGC	2 cut(s)	150, 234
AcoI	YGGCCR	1 cut(s)	7
AdeI	CACNNNGTG	1 cut(s)	143
AgsI	TTSAA	3 cut(s)	32, 85, 222
AluBI	AGCT	3 cut(s)	184, 197, 269
AluI	AGCT	3 cut(s)	184, 197, 269
Alw21I	GWGCWC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	7, 230
ApeKI	GCWGC	2 cut(s)	194, 197
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	2 cut(s)	15, 231
AsuNHI	GCTAGC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	15
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	184, 206
BfaI	CTAG	2 cut(s)	177, 261
BisI	GCNGC	2 cut(s)	195, 198
BlsI	GCNGC	2 cut(s)	196, 199
Bme18I	GGWCC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	15, 231
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	1 cut(s)	29
BmtI	GCTAGC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	239
BsaJI	CCNNGG	1 cut(s)	171
Bse1I	ACTGG	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	10, 44
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	2 cut(s)	184, 206
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	2 cut(s)	150, 167
BshFI	GGCC	2 cut(s)	9, 232
BsiHKAI	GWGCWC	1 cut(s)	148
BsiHKCI	CYCGRG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	9, 232
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	150, 234
BspANI	GGCC	2 cut(s)	9, 232
BspFNI	CGCG	2 cut(s)	150, 167
BspOI	GCTAGC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	171
BssNAI	GTATAC	1 cut(s)	281
Bst1107I	GTATAC	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	15
BstC8I	GCNNGC	4 cut(s)	148, 178, 182, 234
BstF5I	GGATG	2 cut(s)	10, 44
BstFNI	CGCG	2 cut(s)	150, 167
BstHHI	GCGC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 203, 266
BstNSI	RCATGY	1 cut(s)	254
BstUI	CGCG	2 cut(s)	150, 167
BstV1I	GCAGC	2 cut(s)	184, 206
BstZ17I	GTATAC	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	9, 232
BtsCI	GGATG	2 cut(s)	10, 44
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	99, 252
Cac8I	GCNNGC	4 cut(s)	148, 178, 182, 234
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	15, 231
CpoI	CGGWCCG	1 cut(s)	15
CseI	GACGC	1 cut(s)	173
CspI	CGGWCCG	1 cut(s)	15
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	6 cut(s)	9, 176, 184, 197, 232, 269
CviKI_1	RGCY	6 cut(s)	9, 176, 184, 197, 232, 269
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	7
Eco47I	GGWCC	1 cut(s)	15
Eco88I	CYCGRG	1 cut(s)	170
FaeI	CATG	1 cut(s)	254
FaiI	YATR	5 cut(s)	66, 78, 252, 281, 289
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	250
FauI	CCCGC	1 cut(s)	241
FblI	GTMKAC	1 cut(s)	280
Fnu4HI	GCNGC	2 cut(s)	195, 198
FokI	GGATG	2 cut(s)	17, 51
Fsp4HI	GCNGC	2 cut(s)	195, 198
FspBI	CTAG	2 cut(s)	177, 261
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	2 cut(s)	195, 198
HaeIII	GGCC	2 cut(s)	9, 232
HgaI	GACGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	254
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HindIII	AAGCTT	2 cut(s)	182, 267
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	281
Hpy99I	CGWCG	1 cut(s)	15
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	5 cut(s)	42, 92, 194, 200, 250
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 203, 266
Hsp92II	CATG	1 cut(s)	254
HspAI	GCGC	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	2 cut(s)	258, 270
Lsp1109I	GCAGC	2 cut(s)	184, 206
LweI	GCATC	1 cut(s)	29
MaeI	CTAG	2 cut(s)	177, 261
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	4 cut(s)	99, 129, 201, 214
MnlI	CCTC	3 cut(s)	41, 49, 166
MseI	TTAA	2 cut(s)	72, 188
MspA1I	CMGCKG	1 cut(s)	197
MunI	CAATTG	1 cut(s)	201
MvnI	CGCG	2 cut(s)	150, 167
MwoI	GCNNNNNNNGC	3 cut(s)	173, 203, 266
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	1 cut(s)	254
NspI	RCATGY	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	196, 199
PsiI	TTATAA	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	15, 231
PvuII	CAGCTG	1 cut(s)	197
Rsr2I	CGGWCCG	1 cut(s)	15
RsrII	CGGWCCG	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	72, 188
SatI	GCNGC	2 cut(s)	195, 198
Sau96I	GGNCC	2 cut(s)	15, 231
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	5 cut(s)	52, 72, 186, 199, 271
SfaNI	GCATC	1 cut(s)	29
SinI	GGWCC	1 cut(s)	15
Sse9I	AATT	4 cut(s)	99, 129, 201, 214
SsiI	CCGC	2 cut(s)	150, 234
SspMI	CTAG	2 cut(s)	177, 261
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	54
TasI	AATT	4 cut(s)	99, 129, 201, 214
Tru1I	TTAA	2 cut(s)	72, 188
Tru9I	TTAA	2 cut(s)	72, 188
TscAI	CASTG	2 cut(s)	99, 252
TseI	GCWGC	2 cut(s)	194, 197
TspRI	CASTG	2 cut(s)	99, 252
VpaK11BI	GGWCC	1 cut(s)	15
XceI	RCATGY	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	280
XspI	CTAG	2 cut(s)	177, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.