Rorug05G0408600

Rab3 GTPase-activating protein catalytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004790
Physical Location & Seq
Reverse (-)
56414387 .. 56415959
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0408600.1

Sequence Viewer

Length: 1050 bp
ATGGATTGTTGCCATGTCAGGCCTGTAACAAAAGAAGGGACGGTAATGTACCAAATAGAACCCATATTGGTAGCTCCAAAGTCAGCCAATTTGTCAGCCAATGCATTTCCTTCCCTAGGCATCTGCAACGACACAACAACTAGGGCTTTGAAAGACTTGATCTCTCAGAATCGACCCCAAATTATCTTCTTGTGTGAAACAAAGATCAGTCGAAAGGAGGATTTTCAAAAGCTGCATAGGGCGTTAGGGTTTGCCCATTCTGAAACTGTCTTGAGTGAGGGGCAATCTGGTGGCCTCGCTGTCTTTTGGAACGATGATGTTCGCATTAGAATGGGGACGACGTCCGCGCATCATATGGACATGGTGGTGGAGGGGAATCCGGGTGATCCGACCTGGAGGCTCACTGGTTTTTATGGATTTTCAAGAACGGCAGAACGTGATAGATCTTGGCGGCTCCTCAGGGAGTTGTCTGACTTGGATTCTTTGCCCTGGATTGTGGTTGGGGATTTCAATGAAATCCTTAACAATGATGAGAAGATTGATGGCCCGAGAAGGGCTGAACACCAAATGCGAGGATTTCGTGAAGCGTTGGGTTGTGGGGAACTACTGGATTTAGGGTTTCAAGGAACTCGGACGACGTGGTGGAATTCTGAAACCAAACTGCGCCTAGATCGTGCTGTGTGTACACCTTCATGGTATGATATTTTTGGATATGCAAAAGTGGTTCATTTACCACCCAGTGATTCTGATCACATTCCCATACTATTAAGGGCTAGTACTATCCCTATTGCTAATCATCAGAAGCTGCACAGATTCAAGTTTGAAGCTTTTTGGCTTCAACATCCTGAGTGTGACTTTTTGGTGAAAGATGCTTGGCAAACTGATGTCACAGGTGACCCTATGTACCGAGTTACACAGAAGATTAAACATACCAGAATGACACTTGATAAATGGCAAAAAAACACCTTCCGTGTTAGGCAACAATCCATGCTGGGAGTGAGAGGCAGACTTGAAGAACTTATGGACGTCAATATTAACGATGCAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab3-GTPase_cat

Protein Analysis

349

Amino Acids

40.08

Weight (kDa)

6.87

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 43 - 251 7.4e-19 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 344, 1029
AccII CGCG 1 cut(s) 347
AciI CCGC 2 cut(s) 345, 451
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 646
AcyI GRCGYC 2 cut(s) 341, 1026
AdeI CACNNNGTG 1 cut(s) 740
AfaI GTAC 4 cut(s) 50, 685, 778, 905
AfiI CCNNNNNNNGG 2 cut(s) 116, 553
AgsI TTSAA 9 cut(s) 151, 227, 423, 511, 623, 817, 824, 839, 1013
AjiI CACGTC 1 cut(s) 639
AjnI CCWGG 2 cut(s) 392, 488
AluBI AGCT 4 cut(s) 74, 232, 805, 827
AluI AGCT 4 cut(s) 74, 232, 805, 827
AlwI GGATC 1 cut(s) 380
AlwNI CAGNNNCTG 1 cut(s) 805
Ama87I CYCGRG 1 cut(s) 547
AoxI GGCC 3 cut(s) 20, 292, 544
ApeKI GCWGC 2 cut(s) 232, 805
ApoI RAATTY 1 cut(s) 646
AspA2I CCTAGG 1 cut(s) 115
AspLEI GCGC 2 cut(s) 349, 666
AspS9I GGNCC 1 cut(s) 545
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 3 cut(s) 395, 874, 905
AvaI CYCGRG 1 cut(s) 547
AvrII CCTAGG 1 cut(s) 115
AxyI CCTNAGG 1 cut(s) 458
BbvI GCAGC 2 cut(s) 219, 792
BccI CCATC 1 cut(s) 536
BceAI ACGGC 1 cut(s) 444
BciT130I CCWGG 2 cut(s) 394, 490
BclI TGATCA 1 cut(s) 748
BcnI CCSGG 1 cut(s) 381
BfaI CTAG 4 cut(s) 116, 141, 668, 774
BglII AGATCT 1 cut(s) 443
BisI GCNGC 3 cut(s) 233, 452, 806
BlnI CCTAGG 1 cut(s) 115
BlsI GCNGC 3 cut(s) 234, 453, 807
BmcAI AGTACT 1 cut(s) 778
Bme1390I CCNGG 3 cut(s) 381, 394, 490
BmeT110I CYCGRG 1 cut(s) 547
BmgBI CACGTC 1 cut(s) 639
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 1 cut(s) 455
BmrFI CCNGG 3 cut(s) 381, 394, 490
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 4 cut(s) 129, 358, 859, 1030
BmuI ACTGGG 1 cut(s) 732
BpmI CTGGAG 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 292
BpuMI CCSGG 1 cut(s) 381
BsaBI GATNNNNATC 1 cut(s) 747
BsaHI GRCGYC 2 cut(s) 341, 1026
BsaJI CCNNGG 2 cut(s) 115, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 553
Bse1I ACTGG 3 cut(s) 409, 612, 738
Bse21I CCTNAGG 1 cut(s) 458
Bse8I GATNNNNATC 1 cut(s) 747
BseBI CCWGG 2 cut(s) 394, 490
BseDI CCNNGG 2 cut(s) 115, 488
BseGI GGATG 1 cut(s) 841
BseJI GATNNNNATC 1 cut(s) 747
BseLI CCNNNNNNNGG 2 cut(s) 116, 553
BseMII CTCAG 3 cut(s) 179, 472, 837
BseNI ACTGG 3 cut(s) 409, 612, 738
BseRI GAGGAG 1 cut(s) 446
BseXI GCAGC 2 cut(s) 219, 792
BseYI CCCAGC 1 cut(s) 991
BsgI GTGCAG 1 cut(s) 791
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 3 cut(s) 22, 294, 546
BsiHKCI CYCGRG 1 cut(s) 547
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 2 cut(s) 52, 349
BslI CCNNNNNNNGG 2 cut(s) 116, 553
BsmFI GGGAC 2 cut(s) 52, 349
BsnI GGCC 3 cut(s) 22, 294, 546
BsoBI CYCGRG 1 cut(s) 547
Bsp1407I TGTACA 1 cut(s) 683
Bsp143I GATC 6 cut(s) 159, 204, 385, 443, 670, 748
BspACI CCGC 2 cut(s) 345, 451
BspANI GGCC 3 cut(s) 22, 294, 546
BspCNI CTCAG 3 cut(s) 178, 471, 838
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 1 cut(s) 455
BspPI GGATC 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 683
BsrI ACTGG 3 cut(s) 409, 612, 738
BssECI CCNNGG 2 cut(s) 115, 488
BssMI GATC 6 cut(s) 159, 204, 385, 443, 670, 748
BssNI GRCGYC 2 cut(s) 341, 1026
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 394, 490
Bst4CI ACNGT 2 cut(s) 43, 268
BstACI GRCGYC 2 cut(s) 341, 1026
BstAUI TGTACA 1 cut(s) 683
BstDEI CTNAG 3 cut(s) 165, 458, 846
BstEII GGTNACC 1 cut(s) 893
BstENI CCTNNNNNAGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 841
BstFNI CGCG 1 cut(s) 347
BstHHI GCGC 2 cut(s) 349, 666
BstKTI GATC 6 cut(s) 162, 207, 388, 446, 673, 751
BstMBI GATC 6 cut(s) 159, 204, 385, 443, 670, 748
BstNI CCWGG 2 cut(s) 394, 490
BstPI GGTNACC 1 cut(s) 893
BstSCI CCNGG 3 cut(s) 379, 392, 488
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 2 cut(s) 219, 792
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
Bsu36I CCTNAGG 1 cut(s) 458
BsuRI GGCC 3 cut(s) 22, 294, 546
BtrI CACGTC 1 cut(s) 639
BtsCI GGATG 1 cut(s) 841
BtsIMutI CAGTG 2 cut(s) 402, 745
CaiI CAGNNNCTG 1 cut(s) 805
CfoI GCGC 2 cut(s) 349, 666
Cfr13I GGNCC 1 cut(s) 545
Csp6I GTAC 4 cut(s) 49, 684, 777, 904
CviAII CATG 4 cut(s) 14, 361, 693, 988
CviQI GTAC 4 cut(s) 49, 684, 777, 904
DdeI CTNAG 3 cut(s) 165, 458, 846
DpnI GATC 6 cut(s) 161, 206, 387, 445, 672, 750
DpnII GATC 6 cut(s) 159, 204, 385, 443, 670, 748
DraIII CACNNNGTG 1 cut(s) 740
Eco130I CCWWGG 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 22
Eco81I CCTNAGG 1 cut(s) 458
Eco88I CYCGRG 1 cut(s) 547
Eco91I GGTNACC 1 cut(s) 893
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoO65I GGTNACC 1 cut(s) 893
EcoRI GAATTC 1 cut(s) 646
EcoRII CCWGG 2 cut(s) 392, 488
EcoT14I CCWWGG 1 cut(s) 115
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 4 cut(s) 17, 364, 696, 991
FaqI GGGAC 2 cut(s) 52, 349
FatI CATG 4 cut(s) 13, 360, 692, 987
FauNDI CATATG 1 cut(s) 354
FbaI TGATCA 1 cut(s) 748
Fnu4HI GCNGC 3 cut(s) 233, 452, 806
FokI GGATG 1 cut(s) 828
Fsp4HI GCNGC 3 cut(s) 233, 452, 806
FspBI CTAG 4 cut(s) 116, 141, 668, 774
GlaI GCGC 2 cut(s) 348, 665
GluI GCNGC 3 cut(s) 233, 452, 806
GsaI CCCAGC 1 cut(s) 995
GsuI CTGGAG 1 cut(s) 415
HaeIII GGCC 3 cut(s) 22, 294, 546
HapII CCGG 1 cut(s) 380
HhaI GCGC 2 cut(s) 349, 666
Hin1I GRCGYC 2 cut(s) 341, 1026
Hin1II CATG 4 cut(s) 17, 364, 696, 991
Hin6I GCGC 2 cut(s) 347, 664
HinP1I GCGC 2 cut(s) 347, 664
HindIII AAGCTT 1 cut(s) 825
HinfI GANTC 5 cut(s) 169, 376, 479, 743, 813
HpaII CCGG 1 cut(s) 380
HphI GGTGA 3 cut(s) 395, 874, 905
Hpy166II GTNNAC 2 cut(s) 684, 686
Hpy188I TCNGA 8 cut(s) 168, 262, 390, 472, 633, 652, 748, 801
Hpy188III TCNNGA 4 cut(s) 271, 423, 581, 845
Hpy8I GTNNAC 2 cut(s) 684, 686
Hpy99I CGWCG 2 cut(s) 343, 640
HpyAV CCTTC 5 cut(s) 29, 120, 546, 699, 976
HpyCH4III ACNGT 2 cut(s) 43, 268
HpyCH4IV ACGT 4 cut(s) 341, 436, 638, 1026
HpyCH4V TGCA 6 cut(s) 104, 126, 235, 716, 808, 1043
HpyF3I CTNAG 3 cut(s) 165, 458, 846
HpySE526I ACGT 4 cut(s) 341, 436, 638, 1026
Hsp92I GRCGYC 2 cut(s) 341, 1026
Hsp92II CATG 4 cut(s) 17, 364, 696, 991
HspAI GCGC 2 cut(s) 347, 664
Ksp22I TGATCA 1 cut(s) 748
Kzo9I GATC 6 cut(s) 159, 204, 385, 443, 670, 748
LmnI GCTCC 2 cut(s) 79, 459
Lsp1109I GCAGC 2 cut(s) 219, 792
LweI GCATC 4 cut(s) 129, 358, 859, 1030
MaeI CTAG 4 cut(s) 116, 141, 668, 774
MaeII ACGT 4 cut(s) 341, 436, 638, 1026
MaeIII GTNAC 5 cut(s) 25, 851, 886, 893, 910
MalI GATC 6 cut(s) 161, 206, 387, 445, 672, 750
MboI GATC 6 cut(s) 159, 204, 385, 443, 670, 748
MboII GAAGA 4 cut(s) 178, 547, 931, 1025
MflI RGATCY 1 cut(s) 443
MluCI AATT 3 cut(s) 88, 180, 646
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 8 cut(s) 211, 271, 305, 364, 390, 467, 566, 995
Mph1103I ATGCAT 1 cut(s) 106
MseI TTAA 4 cut(s) 522, 767, 924, 1035
MslI CAYNNNNRTG 3 cut(s) 329, 365, 691
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 3 cut(s) 381, 394, 490
MvaI CCWGG 2 cut(s) 394, 490
MvnI CGCG 1 cut(s) 347
NciI CCSGG 1 cut(s) 381
NdeI CATATG 1 cut(s) 354
NdeII GATC 6 cut(s) 159, 204, 385, 443, 670, 748
NlaIII CATG 4 cut(s) 17, 364, 696, 991
NlaIV GGNNCC 1 cut(s) 455
NmuCI GTSAC 3 cut(s) 851, 886, 893
NsiI ATGCAT 1 cut(s) 106
PceI AGGCCT 1 cut(s) 22
PfeI GAWTC 5 cut(s) 169, 376, 479, 743, 813
PflFI GACNNNGTC 1 cut(s) 340
PkrI GCNGC 3 cut(s) 234, 453, 807
Psp6I CCWGG 2 cut(s) 392, 488
PspEI GGTNACC 1 cut(s) 893
PspFI CCCAGC 1 cut(s) 991
PspGI CCWGG 2 cut(s) 392, 488
PspN4I GGNNCC 1 cut(s) 455
PspPI GGNCC 1 cut(s) 545
PstNI CAGNNNCTG 1 cut(s) 805
PsuI RGATCY 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 340
RsaI GTAC 4 cut(s) 50, 685, 778, 905
RsaNI GTAC 4 cut(s) 49, 684, 777, 904
RseI CAYNNNNRTG 3 cut(s) 329, 365, 691
SaqAI TTAA 4 cut(s) 522, 767, 924, 1035
SatI GCNGC 3 cut(s) 233, 452, 806
Sau3AI GATC 6 cut(s) 159, 204, 385, 443, 670, 748
Sau96I GGNCC 1 cut(s) 545
ScaI AGTACT 1 cut(s) 778
ScrFI CCNGG 3 cut(s) 381, 394, 490
SfaNI GCATC 4 cut(s) 129, 358, 859, 1030
SmiMI CAYNNNNRTG 3 cut(s) 329, 365, 691
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 3 cut(s) 88, 180, 646
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 2 cut(s) 345, 451
SspI AATATT 1 cut(s) 1033
SspMI CTAG 4 cut(s) 116, 141, 668, 774
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 3 cut(s) 379, 392, 488
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 43, 268
TaiI ACGT 4 cut(s) 344, 439, 641, 1029
TaqI TCGA 2 cut(s) 172, 211
TasI AATT 3 cut(s) 88, 180, 646
TatI WGTACW 2 cut(s) 683, 776
TauI GCSGC 1 cut(s) 454
TfiI GAWTC 5 cut(s) 169, 376, 479, 743, 813
Tru1I TTAA 4 cut(s) 522, 767, 924, 1035
Tru9I TTAA 4 cut(s) 522, 767, 924, 1035
TscAI CASTG 2 cut(s) 409, 745
TseFI GTSAC 3 cut(s) 851, 886, 893
TseI GCWGC 2 cut(s) 232, 805
Tsp45I GTSAC 3 cut(s) 851, 886, 893
TspDTI ATGAA 3 cut(s) 528, 681, 716
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 2 cut(s) 409, 745
Tth111I GACNNNGTC 1 cut(s) 340
XagI CCTNNNNNAGG 1 cut(s) 114
XapI RAATTY 1 cut(s) 646
XmaJI CCTAGG 1 cut(s) 115
XspI CTAG 4 cut(s) 116, 141, 668, 774
ZraI GACGTC 2 cut(s) 342, 1027
ZrmI AGTACT 1 cut(s) 778
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.