Rroxscaffold_6G00423050

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004790
Physical Location & Seq
Reverse (-)
43974651 .. 43977424
2774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423050.1

Sequence Viewer

Length: 366 bp
ATGGTGAGAGTCGGCCTTTTGAACGATGCTCCGAAGAGCATGTACAACGCAGAAGAGGGGCAAGAGACAGTCATGATCGTGCCTTCGTCCAAGGTCATCATCAAGTTCCTTATCGTTATGCAGAAGCACGGTTCTCACTTTGTTCTTGGGACCCTTCCAAGAGGCCAACAGCAGAGGCCCTCCAAGACCCTTTCTTCCGTTGGAGATCATGGTCTCCGGCCACCTCCTCCACCGCACACCACCATCAAGCAAATCGAACAGATTTTCCGATCAAAAACTCAAACCCATGAGGCAAGTCTTTTCTCTTCTTCAAATCGGCTATTTCAAGAAGGAGCTGGACTCCATCGCATTCTGCCTCAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S8

Protein Analysis

121

Amino Acids

13.5

Weight (kDa)

10.42

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 233
AclI AACGTT 1 cut(s) 361
AcoI YGGCCR 1 cut(s) 218
AfaI GTAC 1 cut(s) 44
AgsI TTSAA 3 cut(s) 22, 312, 326
AloI GAACNNNNNNTCC 2 cut(s) 249, 281
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
Alw26I GTCTC 2 cut(s) 59, 218
AoxI GGCC 4 cut(s) 13, 163, 176, 218
AspS9I GGNCC 2 cut(s) 150, 177
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 150
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BccI CCATC 2 cut(s) 251, 351
BcoDI GTCTC 2 cut(s) 59, 218
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 150, 177
BmiI GGNNCC 2 cut(s) 151, 152
BmsI GCATC 1 cut(s) 16
BplI GAGNNNNNCTC 2 cut(s) 324, 356
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 216
BshFI GGCC 4 cut(s) 15, 165, 178, 220
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 163
BsmAI GTCTC 2 cut(s) 59, 218
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 4 cut(s) 15, 165, 178, 220
Bso31I GGTCTC 1 cut(s) 218
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 3 cut(s) 75, 205, 269
BspACI CCGC 1 cut(s) 233
BspANI GGCC 4 cut(s) 15, 165, 178, 220
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 151, 152
BspQI GCTCTTC 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 3 cut(s) 75, 205, 269
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 70, 131
Bst6I CTCTTC 3 cut(s) 29, 48, 310
BstAUI TGTACA 1 cut(s) 42
BstKTI GATC 3 cut(s) 78, 208, 272
BstMAI GTCTC 2 cut(s) 59, 218
BstMBI GATC 3 cut(s) 75, 205, 269
BstNSI RCATGY 1 cut(s) 43
BsuRI GGCC 4 cut(s) 15, 165, 178, 220
BtgZI GCGATG 1 cut(s) 329
CciI TCATGA 1 cut(s) 72
Cfr13I GGNCC 2 cut(s) 150, 177
Csp6I GTAC 1 cut(s) 43
CviAII CATG 4 cut(s) 40, 73, 209, 287
CviJI RGCY 6 cut(s) 15, 165, 178, 220, 319, 335
CviKI_1 RGCY 6 cut(s) 15, 165, 178, 220, 319, 335
CviQI GTAC 1 cut(s) 43
DpnI GATC 3 cut(s) 77, 207, 271
DpnII GATC 3 cut(s) 75, 205, 269
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 3 cut(s) 29, 48, 310
EarI CTCTTC 3 cut(s) 29, 48, 310
Eco130I CCWWGG 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 150
EcoO109I RGGNCCY 2 cut(s) 150, 177
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 4 cut(s) 43, 76, 212, 290
FaiI YATR 5 cut(s) 41, 74, 119, 210, 288
FaqI GGGAC 1 cut(s) 163
FatI CATG 4 cut(s) 39, 72, 208, 286
HaeIII GGCC 4 cut(s) 15, 165, 178, 220
HapII CCGG 1 cut(s) 217
Hin1II CATG 4 cut(s) 43, 76, 212, 290
HinfI GANTC 2 cut(s) 9, 339
HpaII CCGG 1 cut(s) 217
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 2 cut(s) 33, 269
Hpy188III TCNNGA 2 cut(s) 73, 326
HpyAV CCTTC 3 cut(s) 93, 164, 323
HpyCH4III ACNGT 2 cut(s) 70, 131
HpyCH4IV ACGT 1 cut(s) 361
HpyCH4V TGCA 1 cut(s) 121
HpySE526I ACGT 1 cut(s) 361
Hsp92II CATG 4 cut(s) 43, 76, 212, 290
KflI GGGWCCC 1 cut(s) 150
Kzo9I GATC 3 cut(s) 75, 205, 269
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 2 cut(s) 34, 332
LpnPI CCDG 2 cut(s) 230, 321
LweI GCATC 1 cut(s) 16
MaeII ACGT 1 cut(s) 361
MalI GATC 3 cut(s) 77, 207, 271
MboI GATC 3 cut(s) 75, 205, 269
MboII GAAGA 5 cut(s) 46, 65, 186, 297, 300
MlyI GAGTC 2 cut(s) 18, 333
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 8 cut(s) 49, 155, 168, 190, 234, 237, 283, 366
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 1 cut(s) 217
Mva1269I GAATGC 1 cut(s) 348
NdeII GATC 3 cut(s) 75, 205, 269
NlaIII CATG 4 cut(s) 43, 76, 212, 290
NlaIV GGNNCC 2 cut(s) 151, 152
NspI RCATGY 1 cut(s) 43
PagI TCATGA 1 cut(s) 72
PciSI GCTCTTC 1 cut(s) 29
PctI GAATGC 1 cut(s) 348
PleI GAGTC 2 cut(s) 17, 333
PpsI GAGTC 2 cut(s) 17, 333
PpuMI RGGWCCY 1 cut(s) 150
Psp1406I AACGTT 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 151, 152
PspPI GGNCC 2 cut(s) 150, 177
PspPPI RGGWCCY 1 cut(s) 150
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 29
Sau3AI GATC 3 cut(s) 75, 205, 269
Sau96I GGNCC 2 cut(s) 150, 177
SchI GAGTC 2 cut(s) 18, 333
SetI ASST 4 cut(s) 96, 226, 337, 364
SfaNI GCATC 1 cut(s) 16
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 77
SsiI CCGC 1 cut(s) 233
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 70, 131
TaiI ACGT 1 cut(s) 364
TaqI TCGA 1 cut(s) 255
TatI WGTACW 1 cut(s) 42
TspGWI ACGGA 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 150
XceI RCATGY 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.