Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004790

Physical Location & Seq

Genomic Coordinates Forward (+)

7112735 .. 7116493

Gene Structure 3759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGCTTCTACTACAAGGATTCAAAAAGTGCCAGCGGAGTGGTTCTTGAAGCGCCTGAGGCTAGCAAGCTTTTAAGTGCAGCTGCAATTGCTTTATCAAATTGTTCAAGTTTGTGGCCCGCATTTGTCCCAGTGCATGTTCCTGCTAGGAAAGCTTACATTGGTATACAGAATATGCTCCCCAGCTGTCCTCTCTCTGCACACACACTCCACTTTCCTCCTTCTTCCCGATCCCCTCTCTCTTCCTCGGTCCAAAGACGAGGATCGGACAAGCTCTCCTCTAATACGCCATCAAATGACTTCGGCGGTATCCATGGCGTCCCCAAACAGTTCCTCTCCCTCTCTGCGTTCACTTCAACCAGTGGAGACCATGAGCTCCGGCCACCGACTCCACCGCACACCACCATCGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rab3-GTPase_cat

Protein Analysis

137

Amino Acids

14.49

Weight (kDa)

9.34

Isoelectric Point (pI)

62.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58510 AT5G58510
fragaria_vesca	FvH4_3g39400 FvH4_3g39400 FvH4_3g39400 FvH4_3g39400
malus_domestica	MD11G1065500.v1.1
prunus_persica	Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1
pyrus_communis	pycom11g05550
rosa_chinensis	RchiOBHm_Chr5g0070931
rosa_laevigata	RLG00000036172
rosa_multiflora	Rmu_sc0006203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010270 Rroxscaffold_1G00026030 Rroxscaffold_3G00223950 Rroxscaffold_4G00311860 Rroxscaffold_5G00336150 Rroxscaffold_5G00336440 Rroxscaffold_6G00388970 Rroxscaffold_6G00423050
rosa_rugosa	Rorug05G0408600 Rorug05G0408700
rosa_samantha	Rh5AG464800 Rh5BG483500 Rh5CG508200 Rh5DG495100
rosa_wichuraiana	Rw5G043240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	4 cut(s)	36, 120, 306, 395
AclWI	GGATC	2 cut(s)	225, 271
AcoI	YGGCCR	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	4 cut(s)	24, 50, 108, 357
AluBI	AGCT	7 cut(s)	6, 70, 83, 155, 186, 274, 376
AluI	AGCT	7 cut(s)	6, 70, 83, 155, 186, 274, 376
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	225, 271
AoxI	GGCC	2 cut(s)	116, 380
ApeKI	GCWGC	2 cut(s)	80, 83
AspLEI	GCGC	1 cut(s)	55
AspS9I	GGNCC	2 cut(s)	117, 250
AsuNHI	GCTAGC	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	2 cut(s)	70, 92
BccI	CCATC	2 cut(s)	298, 413
BciVI	GTATCC	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	2 cut(s)	63, 147
BfoI	RGCGCY	1 cut(s)	56
BfuI	GTATCC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	81, 84
BlsI	GCNGC	2 cut(s)	82, 85
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	117, 250
BmrI	ACTGGG	1 cut(s)	125
BmtI	GCTAGC	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	246, 313
BsaXI	ACNNNNNCTCC	4 cut(s)	192, 222, 260, 290
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	2 cut(s)	131, 360
Bse21I	CCTNAGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	246, 313
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	131, 360
BseRI	GAGGAG	1 cut(s)	268
BseXI	GCAGC	2 cut(s)	70, 92
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	2 cut(s)	99, 183
BshFI	GGCC	2 cut(s)	118, 382
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	379
BslFI	GGGAC	2 cut(s)	113, 305
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	360
BsmFI	GGGAC	2 cut(s)	113, 305
BsnI	GGCC	2 cut(s)	118, 382
Bso31I	GGTCTC	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	230, 263
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	4 cut(s)	36, 120, 306, 395
BspANI	GGCC	2 cut(s)	118, 382
BspCNI	CTCAG	1 cut(s)	49
BspOI	GCTAGC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	225, 271
BspTNI	GGTCTC	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	131, 360
BssECI	CCNNGG	2 cut(s)	246, 313
BssMI	GATC	2 cut(s)	230, 263
BssNAI	GTATAC	1 cut(s)	167
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	247
BstACI	GRCGYC	1 cut(s)	318
BstC8I	GCNNGC	4 cut(s)	34, 64, 68, 120
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	313
BstH2I	RGCGCY	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	55
BstKTI	GATC	2 cut(s)	233, 266
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	2 cut(s)	230, 263
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 89, 152
BstNSI	RCATGY	1 cut(s)	140
BstV1I	GCAGC	2 cut(s)	70, 92
BstXI	CCANNNNNNTGG	1 cut(s)	40
BstZ17I	GTATAC	1 cut(s)	167
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	118, 382
BtgI	CCRYGG	1 cut(s)	313
BtsIMutI	CAGTG	2 cut(s)	138, 367
Cac8I	GCNNGC	4 cut(s)	34, 64, 68, 120
CfoI	GCGC	1 cut(s)	55
Cfr13I	GGNCC	2 cut(s)	117, 250
CseI	GACGC	1 cut(s)	307
CviAII	CATG	3 cut(s)	137, 314, 371
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	232, 265
DpnII	GATC	2 cut(s)	230, 263
EaeI	YGGCCR	1 cut(s)	380
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	376
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	376
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	3 cut(s)	140, 317, 374
FaiI	YATR	5 cut(s)	138, 167, 176, 315, 372
FaqI	GGGAC	2 cut(s)	113, 305
FatI	CATG	3 cut(s)	136, 313, 370
FauI	CCCGC	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	81, 84
FriOI	GRGCYC	1 cut(s)	378
Fsp4HI	GCNGC	2 cut(s)	81, 84
FspBI	CTAG	2 cut(s)	63, 147
GlaI	GCGC	1 cut(s)	54
GluI	GCNGC	2 cut(s)	81, 84
GsaI	CCCAGC	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	56
HaeIII	GGCC	2 cut(s)	118, 382
HapII	CCGG	1 cut(s)	379
HgaI	GACGC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	55
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	140, 317, 374
Hin6I	GCGC	1 cut(s)	53
HinP1I	GCGC	1 cut(s)	53
HindIII	AAGCTT	2 cut(s)	68, 153
HinfI	GANTC	2 cut(s)	20, 388
HpaII	CCGG	1 cut(s)	379
Hpy166II	GTNNAC	2 cut(s)	167, 351
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	2 cut(s)	47, 228
Hpy8I	GTNNAC	2 cut(s)	167, 351
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4V	TGCA	4 cut(s)	80, 86, 136, 200
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 89, 152
HpyF3I	CTNAG	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	140, 317, 374
HspAI	GCGC	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	230, 263
LmnI	GCTCC	2 cut(s)	183, 381
LpnPI	CCDG	7 cut(s)	46, 69, 144, 156, 196, 373, 392
Lsp1109I	GCAGC	2 cut(s)	70, 92
MaeI	CTAG	2 cut(s)	63, 147
MalI	GATC	2 cut(s)	232, 265
MboI	GATC	2 cut(s)	230, 263
MboII	GAAGA	2 cut(s)	216, 234
MfeI	CAATTG	1 cut(s)	87
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	2 cut(s)	87, 100
MlyI	GAGTC	1 cut(s)	382
MnlI	CCTC	9 cut(s)	52, 201, 228, 246, 254, 256, 289, 344, 350
MseI	TTAA	1 cut(s)	74
MspA1I	CMGCKG	3 cut(s)	36, 83, 186
MspI	CCGG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	59, 89, 152
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	2 cut(s)	230, 263
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	3 cut(s)	140, 317, 374
NspI	RCATGY	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	82, 85
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
Psp124BI	GAGCTC	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	182
PspPI	GGNCC	2 cut(s)	117, 250
PvuII	CAGCTG	2 cut(s)	83, 186
SacI	GAGCTC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	74
SatI	GCNGC	2 cut(s)	81, 84
Sau3AI	GATC	2 cut(s)	230, 263
Sau96I	GGNCC	2 cut(s)	117, 250
SchI	GAGTC	1 cut(s)	382
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	7 cut(s)	8, 72, 85, 157, 188, 276, 378
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	2 cut(s)	87, 100
SsiI	CCGC	4 cut(s)	36, 120, 306, 395
SspMI	CTAG	2 cut(s)	63, 147
SstI	GAGCTC	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	330
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	2 cut(s)	87, 100
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
TscAI	CASTG	2 cut(s)	138, 367
TseI	GCWGC	2 cut(s)	80, 83
TspRI	CASTG	2 cut(s)	138, 367
VpaK11BI	GGWCC	1 cut(s)	250
XceI	RCATGY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	2 cut(s)	63, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.