Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004790

Physical Location & Seq

Genomic Coordinates Reverse (-)

34430681 .. 34451949

Gene Structure 21269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCGTGGTGTTCTCAATGGCCTCAATTCGAGAGGTATAGGCTCTAACCAGGCTTTATGTAACATGGTGAATACAAGTGGTTGTGAAGTAAAACAAGAAAAGCGTAATGTTCAGCAAGAGATTCGCCGAAGGAATAAATATCCTCATACAATGTCCCGTAAGGGATATGCTGGATTGGAGGAAGAGCTGCAAAAGTTGATAACATTAGATCAACAGCTAAAAGGTCGAGTCTACAAACACATAGAGATAGATAAATTGGTGGGACTATTTTACCCTCACCTGTTTGTTACATACGGAGAGACGGACGAGAGAATGGAAGAGAGAAGTCACGAGAAGACTTCGTCGGATTCCGTCGTTGGTTGCCGGATTTTTGTCATCGGCCGCCGCCCACCGGACTTCTCTAAAAACCTCGCAAGAGGTCCCCAAAGTGATTTGTCGAGAGATCTCATAGGTTGCCGGAAAGGTTTATTGCCTCCAATAGACAGATTTTCCGGTCAAAAACTCAAACCCATGAAGCAACTACTTCAAGCAGGGGCTGAACTCCATCGCATTCTGCCTCAACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

21.49

Weight (kDa)

9.81

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58510 AT5G58510
fragaria_vesca	FvH4_3g39400 FvH4_3g39400 FvH4_3g39400 FvH4_3g39400
malus_domestica	MD11G1065500.v1.1
prunus_persica	Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1 Prupe.6G051700_v2.0.a1
pyrus_communis	pycom11g05550
rosa_chinensis	RchiOBHm_Chr5g0070931
rosa_laevigata	RLG00000036172
rosa_multiflora	Rmu_sc0006203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010270 Rroxscaffold_1G00026030 Rroxscaffold_3G00223950 Rroxscaffold_4G00311860 Rroxscaffold_5G00336150 Rroxscaffold_5G00336440 Rroxscaffold_6G00388970 Rroxscaffold_6G00423050
rosa_rugosa	Rorug05G0408600 Rorug05G0408700
rosa_samantha	Rh5AG464800 Rh5BG483500 Rh5CG508200 Rh5DG495100
rosa_wichuraiana	Rw5G043240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	2 cut(s)	382, 385
AclI	AACGTT	1 cut(s)	562
AcoI	YGGCCR	1 cut(s)	379
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	527
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	2 cut(s)	187, 217
AluI	AGCT	2 cut(s)	187, 217
Alw26I	GTCTC	1 cut(s)	293
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	2 cut(s)	19, 379
ApeKI	GCWGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	79, 269
AvaII	GGWCC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	174
BccI	CCATC	1 cut(s)	552
BcgI	CGANNNNNNTGC	2 cut(s)	104, 138
BciT130I	CCWGG	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	293
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	3 cut(s)	188, 382, 385
BlsI	GCNGC	3 cut(s)	189, 383, 386
Bme1390I	CCNGG	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	341
BsaWI	WCCGGW	2 cut(s)	391, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseX3I	CGGCCG	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	2 cut(s)	21, 381
BsiEI	CGRYCG	1 cut(s)	382
BsiSI	CCGG	4 cut(s)	364, 392, 457, 492
BslFI	GGGAC	3 cut(s)	139, 276, 405
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	293
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	3 cut(s)	139, 276, 405
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	2 cut(s)	21, 381
Bsp143I	GATC	2 cut(s)	208, 442
BspACI	CCGC	2 cut(s)	382, 385
BspANI	GGCC	2 cut(s)	21, 381
BspLI	GGNNCC	1 cut(s)	421
BspQI	GCTCTTC	1 cut(s)	177
BssMI	GATC	2 cut(s)	208, 442
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	2 cut(s)	177, 312
BstKTI	GATC	2 cut(s)	211, 445
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	208, 442
BstMCI	CGRYCG	1 cut(s)	382
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	174
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BstZI	CGGCCG	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	21, 381
BtgZI	GCGATG	1 cut(s)	530
CaiI	CAGNNNCTG	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	419
CviAII	CATG	2 cut(s)	64, 511
CviJI	RGCY	7 cut(s)	21, 42, 53, 187, 217, 381, 536
CviKI_1	RGCY	7 cut(s)	21, 42, 53, 187, 217, 381, 536
DpnI	GATC	2 cut(s)	210, 444
DpnII	GATC	2 cut(s)	208, 442
EaeI	YGGCCR	1 cut(s)	379
EagI	CGGCCG	1 cut(s)	379
Eam1104I	CTCTTC	2 cut(s)	177, 312
EarI	CTCTTC	2 cut(s)	177, 312
EclXI	CGGCCG	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	419
Eco52I	CGGCCG	1 cut(s)	379
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	48
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	2 cut(s)	67, 514
FaiI	YATR	9 cut(s)	38, 58, 65, 147, 168, 242, 292, 449, 512
FaqI	GGGAC	3 cut(s)	139, 276, 405
FatI	CATG	2 cut(s)	63, 510
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	188, 382, 385
Fsp4HI	GCNGC	3 cut(s)	188, 382, 385
GluI	GCNGC	3 cut(s)	188, 382, 385
HaeIII	GGCC	2 cut(s)	21, 381
HapII	CCGG	4 cut(s)	364, 392, 457, 492
Hin1II	CATG	2 cut(s)	67, 514
HinfI	GANTC	3 cut(s)	121, 228, 347
HpaII	CCGG	4 cut(s)	364, 392, 457, 492
HphI	GGTGA	2 cut(s)	79, 269
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	3 cut(s)	30, 329, 438
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	2 cut(s)	346, 356
HpyAV	CCTTC	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	562
HpyCH4V	TGCA	1 cut(s)	190
HpySE526I	ACGT	1 cut(s)	562
Hsp92II	CATG	2 cut(s)	67, 514
Kzo9I	GATC	2 cut(s)	208, 442
LguI	GCTCTTC	1 cut(s)	177
LpnPI	CCDG	9 cut(s)	35, 62, 156, 293, 377, 405, 470, 505, 516
Lsp1109I	GCAGC	1 cut(s)	174
MaeII	ACGT	1 cut(s)	562
MaeIII	GTNAC	3 cut(s)	59, 286, 326
MalI	GATC	2 cut(s)	210, 444
MboI	GATC	2 cut(s)	208, 442
MboII	GAAGA	3 cut(s)	194, 329, 346
MflI	RGATCY	1 cut(s)	442
MluCI	AATT	2 cut(s)	25, 254
MlyI	GAGTC	1 cut(s)	237
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	9 cut(s)	26, 32, 153, 172, 285, 410, 419, 483, 567
MspI	CCGG	4 cut(s)	364, 392, 457, 492
MspR9I	CCNGG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	50
NdeII	GATC	2 cut(s)	208, 442
NlaIII	CATG	2 cut(s)	67, 514
NlaIV	GGNNCC	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	177
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	121, 347
PflFI	GACNNNGTC	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	189, 383, 386
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PpuMI	RGGWCCY	1 cut(s)	419
Psp1406I	AACGTT	1 cut(s)	562
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	419
PspPPI	RGGWCCY	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	536
PsuI	RGATCY	1 cut(s)	442
PsyI	GACNNNGTC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	177
SatI	GCNGC	3 cut(s)	188, 382, 385
Sau3AI	GATC	2 cut(s)	208, 442
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	419
Sse9I	AATT	2 cut(s)	25, 254
SsiI	CCGC	2 cut(s)	382, 385
StyD4I	CCNGG	1 cut(s)	48
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	3 cut(s)	29, 226, 437
TasI	AATT	2 cut(s)	25, 254
TauI	GCSGC	2 cut(s)	384, 387
TfiI	GAWTC	2 cut(s)	121, 347
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	1 cut(s)	187
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	527
TspGWI	ACGGA	3 cut(s)	309, 317, 340
Tth111I	GACNNNGTC	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.