Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004410

Physical Location & Seq

Genomic Coordinates Reverse (-)

64332414 .. 64335914

Gene Structure 3501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00045340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGGTGAAGATGAAACTACTGAGTTGGGTACCATTGGTTTTGGCTATTGTTGTGTTTATGAGTCATGGAGCCTCTGGTTCATTTAATCCTCTCGATAACTACTTGATTGCTTGTGGTTCTTCGAAAAATATCACATTCCAAGGCCGAACCTTTGTTCCTGATACACTGCAATCTTCATTTGTACTGAAAAGTGCAAATTCTTCAGTTGCTAGCTCCAGTTCCAATGCCCCTTCTCCTATTTACCAATCTGCTCGAATTTTCAAGGAAACATCTTCCTATAAGTTCAAAATCCAGCAAGAAGGCCGGCATTGGGTCCGCCTTTATTTCTACCCATTAGCAAACTCAGGCCAAAACTTGACTTCTGCTCCGATAACTGTGGTCACTGATAGCTTTGTACTCTTGAACAACTTCACTTTCAAGAACTATAATGGTTCTTACTTGTTCAAGGAGTATGTAATCAACGTTACTTCAGATAGTTTGACCCTCACTGTCATTCCTTCAAACAGTTCAGTTGCTTTTGTTAATGCAATTGAAGTGGTCTCAATCCCGGATGAACTCATCCCTGATCAGGCATATGGTGTAAATCCATCTGCTCCTTTTAGTGGCCTTTCTGCACTTGCCTTTCAAACAATGTACCGATTAAACATGGGGGGTCCTTTACTCACCGCTGACAATGATACCCTTGAAAGAACTTGGGAGAATGATGTGAAATACCTTCATGTCGACAGCTCTGCAGTGAATGTATCAATCAACCCTGCCAGTGTGAAGTATCATGCGGGTGTCACACCAGAGATAGCACCAAACTGGGTCTATGCCACTGCTGAAGCCATGGGAGATGCAAATGTGCCAAATGGGAACTTCAACATAACTTGGGTCTTTCAGGCAGACCCAAATTATTTGTATCTTGTTCGGGTACATTTCTGTGATATTGTCAGCAAGGCACTGAATAACCTAGTTTTCAATCTTTTCATCAATTCCAACAATGTGCTCTCAAGTCTCGACCTGTCCTCCATTACTGGTGACTTGGGTGTGCCGTATTACAAAGACTTTGTTTCCAACTCCTCAGCAGATTCAAATACTTTGACAGTCAGTGTTGGTCCAGATTCAATGGCTGATGTCACTAATGCAATTCTGAATGGCTTGGAGATTTTGAAGATCAGCAATGACTTGGGGAGCTTGGATGGGTCTTTGTCTGTCCAGAGTCTCCTTCCCAGTTCACCCTCAAAGAGTAATAACATAGTAATCATCGTTGGGTGTGCTGTCGGAGCTGTAGCTCTTGTGGCAATCATTGCTCTCTTATATTGGTGCTTGGCATCTCGCAATTCAAAGACTACTCCTAACCAAGGTCATCCATGGCCACATCTGCCCTCGAATGGAAACTCTCAGACAATGACCAAAATGTCAACAACTTCACAAAAGAGTGGAACAGCTAGCTGCATCTCATTAGCTTCCTCCAATCTTGGCCGCTTATTCATGTTCCAAGAAATCCTGGATGCAACCAACAAGTTTGATGAGAGCCTACTTCTCGGGGTTGGCGGTTTTGGCAGGGTTTACAAGGGAACACTAGAAGATGGGACAAAAGTAGCTGTTAAAAGAGGAAACCCCAGATCAGAACAAGGTCTTGCTGAATTCCGAACTGAGATTGAAATGTTATCGAAGCTTCGTCACCGCCACCTTGTGTCTCTTATTGGTTATTGTGATGAAAGGTCAGAGATGATTCTTGTGTATGAATACATGGCTAATGGACCGCTCCGGAGCCATTTGTATGGAACAGATTTGCCAACCTTGTCATGGAAGCTACGCCTTGAAATTTGCATTGGGGCTGCAAGAGGACTCCATTATCTCCACACCGGTGCAGCTCAAAGCATAATTCACCGAGATGTGAAGACAACAAACATTCTCTTGGATGAGAACTTTTTAGCCAAAGTTGCAGATTTTGGCCTCTCAAAAGCAGGTCCAGCTATAGATCAGACTCATGTCAGTACGGCTGTTAAGGGTAGTTTTGGTTACCTTGATCCTGAATACTTTAGAAGGCAGCAGCTCACTGAGAAATCAGACGTGTATTCGTTTGGAGTAGTTCTAATGGAAGTTCTTTGCACAAGACCAGCTTTGAACCCGGTTCTTCCCAGAGAGCAAGTGAACATAGCAGAATGGGCAATGACCTGGCAAAAGAAGGGCATGCTGGACCAAATCATGGACTCGAATCTGGCTGGGAAGGTAAATCCAGCTTCTCTTAAGAAGTTTGGTGAGACAGCTGAGAAGTGCCTTGCCGAGTATGGTGTTGACAGGCCATCAATGGGAGATGTCTTGTGGAATCTTGAATATGCTCTTCAGCTTGAGGAGACTTCGTCTGCACTCATGGAACCAGAAGATAACAGCACAAACCACATACAAGACATCGAATTGACACCACTAGAGCCATTTGACAACAGTGTGAGTATGATTGAGGGAGGGCACTCCGGCACTGATGATGACACTCAAGATGCTGCCACAAGTGCTGTGTTCTCTCAGCTAGTAAATCCTCGTGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

844

Amino Acids

92.19

Weight (kDa)

5.36

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	36 - 385	1.3e-30	Malectin-like domain
Pkinase	PF00069	508 - 768	8.1e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	509 - 768	3.7e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54380
fragaria_vesca	FvH4_2g16820 FvH4_2g16820 FvH4_3g20780 FvH4_3g20780 FvH4_3g20780
malus_domestica	MD03G1221300.v1.1 MD11G1238700.v1.1
prunus_persica	Prupe.4G188000_v2.0.a1
pyrus_communis	pycom03g17020 pycom11g21030
rosa_chinensis	RchiOBHm_Chr5g0035071 RchiOBHm_Chr6g0280941
rosa_laevigata	RLG00000013014 RLG00000033592
rosa_multiflora	Rmu_sc0005362.1_g000028 Rmu_sc0023551.1_g000001 Rmu_sc0023552.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045340 Rroxscaffold_7G00187470
rosa_rugosa	Rorug05G0149600 Rorug06G0137100
rosa_samantha	Rh5AG242600 Rh5BG242200 Rh5CG273700 Rh5DG250800 Rh6AG249400 Rh6BG251500 Rh6CG252100 Rh6DG243900
rosa_wichuraiana	Rw5G022160 Rw6G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1399
Acc36I	ACCTGC	1 cut(s)	1943
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AccB7I	CCANNNNNTGG	1 cut(s)	2194
AccBSI	CCGCTC	1 cut(s)	1750
AccI	GTMKAC	1 cut(s)	723
AccIII	TCCGGA	1 cut(s)	1752
AciI	CCGC	7 cut(s)	316, 666, 776, 1465, 1536, 1669, 1748
AclI	AACGTT	1 cut(s)	462
AclWI	GGATC	1 cut(s)	2009
AcoI	YGGCCR	2 cut(s)	1355, 1462
AcsI	RAATTY	4 cut(s)	196, 255, 1628, 1809
AcuI	CTGAAG	4 cut(s)	186, 453, 843, 2315
AdeI	CACNNNGTG	1 cut(s)	1678
AfaI	GTAC	6 cut(s)	30, 183, 396, 635, 915, 1984
AfiI	CCNNNNNNNGG	8 cut(s)	310, 568, 602, 1343, 1373, 1791, 2194, 2297
AflII	CTTAAG	1 cut(s)	2234
AflIII	ACRYGT	1 cut(s)	2058
AgeI	ACCGGT	1 cut(s)	1850
AjiI	CACGTC	1 cut(s)	2059
AjnI	CCWGG	2 cut(s)	1488, 2162
AjuI	GAANNNNNNNTTGG	2 cut(s)	1800, 1832
AleI	CACNNNNGTG	1 cut(s)	1851
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
Alw21I	GWGCWC	1 cut(s)	990
Alw26I	GTCTC	6 cut(s)	544, 1001, 1208, 1686, 2243, 2336
AlwI	GGATC	1 cut(s)	2009
Ama87I	CYCGRG	1 cut(s)	1526
Aor13HI	TCCGGA	1 cut(s)	1752
AoxI	GGCC	8 cut(s)	142, 301, 346, 604, 1355, 1462, 1939, 2288
ApeKI	GCWGC	6 cut(s)	1434, 1823, 1856, 2035, 2038, 2486
ApoI	RAATTY	4 cut(s)	196, 255, 1628, 1809
AsiGI	ACCGGT	1 cut(s)	1850
Asp700I	GAANNNNTTC	1 cut(s)	407
Asp718I	GGTACC	1 cut(s)	28
AspS9I	GGNCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
AsuC2I	CCSGG	2 cut(s)	548, 2117
AsuHPI	GGTGA	7 cut(s)	16, 655, 1031, 1209, 1658, 1865, 2258
AsuII	TTCGAA	1 cut(s)	122
AsuNHI	GCTAGC	2 cut(s)	209, 1430
AvaI	CYCGRG	1 cut(s)	1526
AvaII	GGWCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
BaeGI	GKGCMC	1 cut(s)	2457
BalI	TGGCCA	1 cut(s)	1357
BanI	GGYRCC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	2523
BbsI	GAAGAC	1 cut(s)	1892
Bbv12I	GWGCWC	1 cut(s)	990
BbvCI	CCTCAGC	1 cut(s)	1063
BbvI	GCAGC	6 cut(s)	1421, 1810, 1868, 2047, 2050, 2473
BccI	CCATC	4 cut(s)	595, 1175, 1565, 2299
BceAI	ACGGC	2 cut(s)	1018, 2001
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BciT130I	CCWGG	2 cut(s)	1490, 2164
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	2 cut(s)	548, 2117
BcoDI	GTCTC	6 cut(s)	544, 1001, 1208, 1686, 2243, 2336
BfaI	CTAG	6 cut(s)	210, 953, 1431, 1565, 2414, 2513
BfmI	CTRYAG	3 cut(s)	732, 1269, 1962
BfrI	CTTAAG	1 cut(s)	2234
BfuAI	ACCTGC	1 cut(s)	1943
BisI	GCNGC	7 cut(s)	1435, 1465, 1824, 1857, 2036, 2039, 2487
BlsI	GCNGC	7 cut(s)	1436, 1466, 1825, 1858, 2037, 2040, 2488
Bme1390I	CCNGG	4 cut(s)	548, 1490, 2117, 2164
Bme18I	GGWCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
BmeT110I	CYCGRG	1 cut(s)	1526
BmgBI	CACGTC	1 cut(s)	2059
BmgT120I	GGNCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
BmiI	GGNNCC	6 cut(s)	30, 70, 314, 654, 1757, 2364
BmrFI	CCNGG	4 cut(s)	548, 1490, 2117, 2164
BmrI	ACTGGG	2 cut(s)	814, 1206
BmsI	GCATC	5 cut(s)	826, 1322, 1446, 1483, 2473
BmtI	GCTAGC	2 cut(s)	213, 1434
BmuI	ACTGGG	2 cut(s)	814, 1206
BoxI	GACNNNNGTC	1 cut(s)	1976
BpiI	GAAGAC	1 cut(s)	1892
BpmI	CTGGAG	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	1063
Bpu14I	TTCGAA	1 cut(s)	122
BpuEI	CTTGAG	3 cut(s)	976, 2357, 2463
BpuMI	CCSGG	2 cut(s)	548, 2117
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	4 cut(s)	139, 828, 1342, 1352
BsaWI	WCCGGW	2 cut(s)	1752, 1850
BsaXI	ACNNNNNCTCC	6 cut(s)	349, 379, 992, 1022, 2333, 2363
Bsc4I	CCNNNNNNNGG	8 cut(s)	310, 568, 602, 1343, 1373, 1791, 2194, 2297
Bse118I	RCCGGY	2 cut(s)	303, 1850
Bse1I	ACTGG	5 cut(s)	216, 759, 809, 1021, 1212
Bse3DI	GCAATG	3 cut(s)	1168, 1287, 2163
BseAI	TCCGGA	1 cut(s)	1752
BseBI	CCWGG	2 cut(s)	1490, 2164
BseDI	CCNNGG	4 cut(s)	139, 828, 1342, 1352
BseGI	GGATG	6 cut(s)	556, 558, 1186, 1348, 1498, 1912
BseLI	CCNNNNNNNGG	8 cut(s)	310, 568, 602, 1343, 1373, 1791, 2194, 2297
BseMI	GCAATG	3 cut(s)	1168, 1287, 2163
BseMII	CTCAG	8 cut(s)	11, 357, 1077, 1397, 1629, 2037, 2247, 2522
BseNI	ACTGG	5 cut(s)	216, 759, 809, 1021, 1212
BseRI	GAGGAG	2 cut(s)	1051, 2354
BseSI	GKGCMC	1 cut(s)	2457
BseXI	GCAGC	6 cut(s)	1421, 1810, 1868, 2047, 2050, 2473
BseYI	CCCAGC	1 cut(s)	2210
BsgI	GTGCAG	3 cut(s)	597, 1875, 2337
BshFI	GGCC	8 cut(s)	144, 303, 348, 606, 1357, 1464, 1941, 2290
BshNI	GGYRCC	1 cut(s)	28
BshTI	ACCGGT	1 cut(s)	1850
BsiHKAI	GWGCWC	1 cut(s)	990
BsiHKCI	CYCGRG	1 cut(s)	1526
BsiSI	CCGG	6 cut(s)	304, 548, 1753, 1851, 2117, 2460
BslFI	GGGAC	1 cut(s)	1588
BslI	CCNNNNNNNGG	8 cut(s)	310, 568, 602, 1343, 1373, 1791, 2194, 2297
BsmAI	GTCTC	6 cut(s)	544, 1001, 1208, 1686, 2243, 2336
BsmFI	GGGAC	1 cut(s)	1588
BsnI	GGCC	8 cut(s)	144, 303, 348, 606, 1357, 1464, 1941, 2290
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	1526
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	990, 2457
Bsp13I	TCCGGA	1 cut(s)	1752
Bsp143I	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
Bsp19I	CCATGG	2 cut(s)	828, 1352
BspACI	CCGC	7 cut(s)	316, 666, 776, 1465, 1536, 1669, 1748
BspANI	GGCC	8 cut(s)	144, 303, 348, 606, 1357, 1464, 1941, 2290
BspCNI	CTCAG	8 cut(s)	12, 356, 1076, 1396, 1630, 2038, 2248, 2521
BspEI	TCCGGA	1 cut(s)	1752
BspLI	GGNNCC	6 cut(s)	30, 70, 314, 654, 1757, 2364
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	1943
BspOI	GCTAGC	2 cut(s)	213, 1434
BspPI	GGATC	1 cut(s)	2009
BspQI	GCTCTTC	1 cut(s)	2334
BspT104I	TTCGAA	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	2234
BspTNI	GGTCTC	1 cut(s)	544
BsrBI	CCGCTC	1 cut(s)	1750
BsrDI	GCAATG	3 cut(s)	1168, 1287, 2163
BsrFI	RCCGGY	2 cut(s)	303, 1850
BsrI	ACTGG	5 cut(s)	216, 759, 809, 1021, 1212
BssAI	RCCGGY	2 cut(s)	303, 1850
BssECI	CCNNGG	4 cut(s)	139, 828, 1342, 1352
BssMI	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
BssSI	CACGAG	1 cut(s)	2523
BssT1I	CCWWGG	4 cut(s)	139, 828, 1342, 1352
Bst2BI	CACGAG	1 cut(s)	2523
Bst2UI	CCWGG	2 cut(s)	1490, 2164
Bst4CI	ACNGT	5 cut(s)	376, 490, 506, 1087, 2432
Bst6I	CTCTTC	1 cut(s)	2334
BstAFI	CTTAAG	1 cut(s)	2234
BstAPI	GCANNNNNTGC	1 cut(s)	1289
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	4 cut(s)	211, 305, 1432, 2180
BstDEI	CTNAG	8 cut(s)	20, 343, 1063, 1383, 1638, 2046, 2256, 2508
BstDSI	CCRYGG	2 cut(s)	828, 1352
BstEII	GGTNACC	1 cut(s)	2006
BstENI	CCTNNNNNAGG	1 cut(s)	1341
BstF5I	GGATG	6 cut(s)	556, 558, 1186, 1348, 1498, 1912
BstKTI	GATC	5 cut(s)	568, 1158, 1610, 1969, 2017
BstMAI	GTCTC	6 cut(s)	544, 1001, 1208, 1686, 2243, 2336
BstMBI	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
BstMWI	GCNNNNNNNGC	9 cut(s)	1265, 1280, 1289, 1363, 1542, 1928, 1958, 2153, 2495
BstNI	CCWGG	2 cut(s)	1490, 2164
BstNSI	RCATGY	1 cut(s)	2182
BstPAI	GACNNNNGTC	1 cut(s)	1976
BstPI	GGTNACC	1 cut(s)	2006
BstSCI	CCNGG	4 cut(s)	546, 1488, 2115, 2162
BstSFI	CTRYAG	3 cut(s)	732, 1269, 1962
BstSLI	GKGCMC	1 cut(s)	2457
BstV1I	GCAGC	6 cut(s)	1421, 1810, 1868, 2047, 2050, 2473
BstV2I	GAAGAC	1 cut(s)	1892
BstXI	CCANNNNNNTGG	1 cut(s)	1766
BsuRI	GGCC	8 cut(s)	144, 303, 348, 606, 1357, 1464, 1941, 2290
BtgI	CCRYGG	2 cut(s)	828, 1352
BtrI	CACGTC	1 cut(s)	2059
BtsCI	GGATG	6 cut(s)	556, 558, 1186, 1348, 1498, 1912
BtsI	GCAGTG	3 cut(s)	164, 741, 816
BveI	ACCTGC	1 cut(s)	1943
Cac8I	GCNNGC	4 cut(s)	211, 305, 1432, 2180
Cfr10I	RCCGGY	2 cut(s)	303, 1850
Cfr13I	GGNCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
Csp6I	GTAC	6 cut(s)	29, 182, 395, 634, 914, 1983
CspAI	ACCGGT	1 cut(s)	1850
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviQI	GTAC	6 cut(s)	29, 182, 395, 634, 914, 1983
DdeI	CTNAG	8 cut(s)	20, 343, 1063, 1383, 1638, 2046, 2256, 2508
DpnI	GATC	5 cut(s)	567, 1157, 1609, 1968, 2016
DpnII	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
DraIII	CACNNNGTG	1 cut(s)	1678
DrdI	GACNNNNNNGTC	1 cut(s)	1399
DseDI	GACNNNNNNGTC	1 cut(s)	1399
EaeI	YGGCCR	2 cut(s)	1355, 1462
Eam1104I	CTCTTC	1 cut(s)	2334
EarI	CTCTTC	1 cut(s)	2334
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	4 cut(s)	139, 828, 1342, 1352
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
Eco57I	CTGAAG	4 cut(s)	186, 453, 843, 2315
Eco88I	CYCGRG	1 cut(s)	1526
Eco91I	GGTNACC	1 cut(s)	2006
EcoNI	CCTNNNNNAGG	1 cut(s)	1341
EcoO109I	RGGNCCY	1 cut(s)	653
EcoO65I	GGTNACC	1 cut(s)	2006
EcoRI	GAATTC	1 cut(s)	1628
EcoRII	CCWGG	2 cut(s)	1488, 2162
EcoT14I	CCWWGG	4 cut(s)	139, 828, 1342, 1352
ErhI	CCWWGG	4 cut(s)	139, 828, 1342, 1352
FalI	AAGNNNNNCTT	2 cut(s)	2092, 2124
FaqI	GGGAC	1 cut(s)	1588
FauI	CCCGC	1 cut(s)	769
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	7 cut(s)	1435, 1465, 1824, 1857, 2036, 2039, 2487
FokI	GGATG	6 cut(s)	545, 563, 1193, 1335, 1505, 1919
Fsp4HI	GCNGC	7 cut(s)	1435, 1465, 1824, 1857, 2036, 2039, 2487
FspBI	CTAG	6 cut(s)	210, 953, 1431, 1565, 2414, 2513
GluI	GCNGC	7 cut(s)	1435, 1465, 1824, 1857, 2036, 2039, 2487
GsaI	CCCAGC	1 cut(s)	2214
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	8 cut(s)	144, 303, 348, 606, 1357, 1464, 1941, 2290
HapII	CCGG	6 cut(s)	304, 548, 1753, 1851, 2117, 2460
HincII	GTYRAC	3 cut(s)	724, 1404, 2284
HindII	GTYRAC	3 cut(s)	724, 1404, 2284
HindIII	AAGCTT	1 cut(s)	1658
HpaII	CCGG	6 cut(s)	304, 548, 1753, 1851, 2117, 2460
HphI	GGTGA	7 cut(s)	16, 655, 1031, 1209, 1658, 1865, 2258
Hpy166II	GTNNAC	6 cut(s)	724, 1217, 1404, 1552, 2140, 2284
Hpy8I	GTNNAC	6 cut(s)	724, 1217, 1404, 1552, 2140, 2284
HpyAV	CCTTC	8 cut(s)	240, 293, 507, 725, 1217, 2025, 2167, 2209
HpyCH4III	ACNGT	5 cut(s)	376, 490, 506, 1087, 2432
HpyCH4IV	ACGT	2 cut(s)	462, 2058
HpyF10VI	GCNNNNNNNGC	9 cut(s)	1265, 1280, 1289, 1363, 1542, 1928, 1958, 2153, 2495
HpyF3I	CTNAG	8 cut(s)	20, 343, 1063, 1383, 1638, 2046, 2256, 2508
HpySE526I	ACGT	2 cut(s)	462, 2058
Kpn2I	TCCGGA	1 cut(s)	1752
KpnI	GGTACC	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	303
KroNI	GCCGGC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
LguI	GCTCTTC	1 cut(s)	2334
LmnI	GCTCC	8 cut(s)	68, 218, 370, 598, 1173, 1265, 1755, 1755
Lsp1109I	GCAGC	6 cut(s)	1421, 1810, 1868, 2047, 2050, 2473
LweI	GCATC	5 cut(s)	826, 1322, 1446, 1483, 2473
MaeI	CTAG	6 cut(s)	210, 953, 1431, 1565, 2414, 2513
MaeII	ACGT	2 cut(s)	462, 2058
MaeIII	GTNAC	7 cut(s)	379, 463, 781, 1019, 1117, 1664, 2006
MalI	GATC	5 cut(s)	567, 1157, 1609, 1968, 2016
MbiI	CCGCTC	1 cut(s)	1750
MboI	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	2 cut(s)	990, 2457
MlsI	TGGCCA	1 cut(s)	1357
MluNI	TGGCCA	1 cut(s)	1357
MlyI	GAGTC	5 cut(s)	70, 1210, 1827, 1966, 2192
MmeI	TCCRAC	3 cut(s)	1002, 1080, 1243
Mox20I	TGGCCA	1 cut(s)	1357
MroI	TCCGGA	1 cut(s)	1752
MroNI	GCCGGC	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	407
MscI	TGGCCA	1 cut(s)	1357
MseI	TTAA	6 cut(s)	84, 522, 641, 1590, 1992, 2235
MslI	CAYNNNNRTG	5 cut(s)	777, 921, 1764, 1851, 1878
Msp20I	TGGCCA	1 cut(s)	1357
MspA1I	CMGCKG	2 cut(s)	668, 2255
MspCI	CTTAAG	1 cut(s)	2234
MspI	CCGG	6 cut(s)	304, 548, 1753, 1851, 2117, 2460
MspR9I	CCNGG	4 cut(s)	548, 1490, 2117, 2164
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	1490, 2164
MwoI	GCNNNNNNNGC	9 cut(s)	1265, 1280, 1289, 1363, 1542, 1928, 1958, 2153, 2495
NaeI	GCCGGC	1 cut(s)	305
NciI	CCSGG	2 cut(s)	548, 2117
NcoI	CCATGG	2 cut(s)	828, 1352
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
NgoMIV	GCCGGC	1 cut(s)	303
NheI	GCTAGC	2 cut(s)	209, 1430
NlaIV	GGNNCC	6 cut(s)	30, 70, 314, 654, 1757, 2364
NmeAIII	GCCGAG	1 cut(s)	2296
NmuCI	GTSAC	5 cut(s)	379, 781, 1019, 1117, 1664
NspI	RCATGY	1 cut(s)	2182
NspV	TTCGAA	1 cut(s)	122
OliI	CACNNNNGTG	1 cut(s)	1851
PaeI	GCATGC	1 cut(s)	2182
PciSI	GCTCTTC	1 cut(s)	2334
PdiI	GCCGGC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	5 cut(s)	1070, 1103, 1717, 2203, 2314
PflFI	GACNNNGTC	1 cut(s)	2347
PflMI	CCANNNNNTGG	1 cut(s)	2194
PfoI	TCCNGGA	2 cut(s)	546, 1488
PinAI	ACCGGT	1 cut(s)	1850
PkrI	GCNGC	7 cut(s)	1436, 1466, 1825, 1858, 2037, 2040, 2488
PleI	GAGTC	5 cut(s)	69, 1209, 1827, 1966, 2192
PpsI	GAGTC	5 cut(s)	69, 1209, 1827, 1966, 2192
PpuMI	RGGWCCY	1 cut(s)	653
PshAI	GACNNNNGTC	1 cut(s)	1976
Psp1406I	AACGTT	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	1488, 2162
PspEI	GGTNACC	1 cut(s)	2006
PspFI	CCCAGC	1 cut(s)	2210
PspGI	CCWGG	2 cut(s)	1488, 2162
PspN4I	GGNNCC	6 cut(s)	30, 70, 314, 654, 1757, 2364
PspPI	GGNCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
PspPPI	RGGWCCY	1 cut(s)	653
PstI	CTGCAG	1 cut(s)	736
PsyI	GACNNNGTC	1 cut(s)	2347
PvuII	CAGCTG	1 cut(s)	2255
RsaI	GTAC	6 cut(s)	30, 183, 396, 635, 915, 1984
RsaNI	GTAC	6 cut(s)	29, 182, 395, 634, 914, 1983
RseI	CAYNNNNRTG	5 cut(s)	777, 921, 1764, 1851, 1878
SalI	GTCGAC	1 cut(s)	722
SapI	GCTCTTC	1 cut(s)	2334
SaqAI	TTAA	6 cut(s)	84, 522, 641, 1590, 1992, 2235
SatI	GCNGC	7 cut(s)	1435, 1465, 1824, 1857, 2036, 2039, 2487
Sau3AI	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
Sau96I	GGNCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
SchI	GAGTC	5 cut(s)	70, 1210, 1827, 1966, 2192
ScrFI	CCNGG	4 cut(s)	548, 1490, 2117, 2164
SduI	GDGCHC	2 cut(s)	990, 2457
SfaNI	GCATC	5 cut(s)	826, 1322, 1446, 1483, 2473
SfcI	CTRYAG	3 cut(s)	732, 1269, 1962
SfuI	TTCGAA	1 cut(s)	122
SgrAI	CRCCGGYG	1 cut(s)	1850
SinI	GGWCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
SmiMI	CAYNNNNRTG	5 cut(s)	777, 921, 1764, 1851, 1878
SmlI	CTYRAG	4 cut(s)	991, 2234, 2336, 2478
SmoI	CTYRAG	4 cut(s)	991, 2234, 2336, 2478
SphI	GCATGC	1 cut(s)	2182
SsiI	CCGC	7 cut(s)	316, 666, 776, 1465, 1536, 1669, 1748
SspMI	CTAG	6 cut(s)	210, 953, 1431, 1565, 2414, 2513
StyD4I	CCNGG	4 cut(s)	546, 1488, 2115, 2162
StyI	CCWWGG	4 cut(s)	139, 828, 1342, 1352
TaaI	ACNGT	5 cut(s)	376, 490, 506, 1087, 2432
TaiI	ACGT	2 cut(s)	465, 2061
TaqI	TCGA	9 cut(s)	93, 122, 253, 723, 999, 1370, 1655, 2201, 2400
TatI	WGTACW	2 cut(s)	181, 394
TauI	GCSGC	1 cut(s)	1467
TfiI	GAWTC	5 cut(s)	1070, 1103, 1717, 2203, 2314
Tru1I	TTAA	6 cut(s)	84, 522, 641, 1590, 1992, 2235
Tru9I	TTAA	6 cut(s)	84, 522, 641, 1590, 1992, 2235
TseFI	GTSAC	5 cut(s)	379, 781, 1019, 1117, 1664
TseI	GCWGC	6 cut(s)	1434, 1823, 1856, 2035, 2038, 2486
Tsp45I	GTSAC	5 cut(s)	379, 781, 1019, 1117, 1664
TspDTI	ATGAA	9 cut(s)	26, 69, 165, 567, 707, 958, 1462, 1716, 1743
Tth111I	GACNNNGTC	1 cut(s)	2347
Van91I	CCANNNNNTGG	1 cut(s)	2194
Vha464I	CTTAAG	1 cut(s)	2234
VpaK11BI	GGWCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
XagI	CCTNNNNNAGG	1 cut(s)	1341
XapI	RAATTY	4 cut(s)	196, 255, 1628, 1809
XceI	RCATGY	1 cut(s)	2182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1788
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	6 cut(s)	210, 953, 1431, 1565, 2414, 2513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.