Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004410

Physical Location & Seq

Genomic Coordinates Forward (+)

30444080 .. 30446614

Gene Structure 2535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGGTGAAGATGAAACTACTGAGTTGGGTACCATTGGTTTTGGCCATTGTTGTGTTTATGAGTCATGGAGCCTCTGGTTTATTTAATCCTCTCGATAACTACTTGATTGCTTGTGGTTCTTCGAAAAATATCACATTCCAAGGCCGAACCTTTGTTCCTGATACACTGCAATCTTCATTTGTACTGAAAAGTGCAAATTCTTCAGTTGCTAGCTCCAGTTCCAATGCCCCTTCTCCTATTTACCAATCTGCTCGAATTTTCAAGGAAACATCTTCCTATAAGTTCAAAATCCAGCAAGAAGGCCGGCATTGGGTCCGCCTTTATTTCTACCCAATAGCAAACTCAGGCCAAAACTTGACTTCTGCGCCGATAACTGTGGTCACTGATAGCTTTGTACTCTTGAACAACTTCACTTTCAAGAACTATAATGGTTCTTACTTGTTCAAGGAGTATGTAATCAACGTTACTTCAGATAGTTTGACCCTCACCATCATTCCTTCAAACAGTTCAGTTGCTTTTGTTAATGCAATTGAAGTGGTCTCAATCCCGGATGAACTTATCCCTGATCAGGCATATGGTGTAAATCCATCTGCTCCTTTTAGTGGCCTTTCTGCACTTGCCCTTCAAACAATGTACCGATTAAACATGGGGGGTCCTTTACTCACCGCTGACAATGATACCCTTGAAAGAACTTGGGAGAATGATGTGAAATACCTTCATGTCGACAGCTCTGCAGTGCATGTATCAGTCAACCCTGCCAGTGTGAAGTATCATGTGGGTGTCACACCAGAGATAGCACCAAACTGGGTCTATGCCACTGCTGAAGCCATGGGAGATGCGAATGTGCCAAATGGGAACTTCAACATAACTTGGGTCTTTCAGGCAGACCCAAATTATTTGTATCTTGTTCGGGTACATTTCTGTGATATTGTCAGCAAGGCACTGAATAACCTAGTTTTCAATCTTTTCATCAATTCCAACAATGTGCTCTCGAGTCTCGACCTGTCCTCCATTACTGGTGACTTGGGTGTGCCGTATTACAAAGACTTTGTTTCCAACTCCTCAGGAGATTCAAATACTTTGACAGTCAGTGTTGGTCCAGATTCAATGGCTGATGTCACTAATGCAATTCTGAATGGCTTGGAGATTTTGAAGATCAGCAATGACTTGGGGAGCTTGGATGGGTCTTTGTCTGTCCAGAGTCTCCTTCCCAGTTCACCCTCAAAGAGTAATAACATACTAATCATCATTGGGTGTGTTGTCGGAGCTGTAGCTCTTGTGGCAATTATTGCTCTCTTATATTGGTGCTTGGCATCTCGCAATTCAAAGACTACTCCAAACCAAGGTCATCCATGGCCACATCTGCCCTCGTATGGAAACTCTCAGACAATGACCAAAATGTCAACAACTTCACAAAAGAGTGGAACAGCTAGCTGCATCTCATTAGCTTCCTCCAATCTTGGCCGCTTATTCATGTTCCAAGAAATCCTGGATGCAACCAACAAGTTTGATGAGAGCCTACTTCTCGGGGTTGGCGGTTTTGGCAGGGTTTACAAGGGAACACTAGAAGATGGGACAAAGGTAGCTGTTAAAAGAGGAAACCCCAGATCGGAACAAGGTCTTGCTGAATTCCGAACTGAGATTGAAATGTTATCGAAGCTTCGTCACCGCCACCTTGTGTCTCTTATCGGTTATTGTGATGAAAGGTCAGAGATGATTCTTGTGTATGAATACATGGCTAATGGACCGCTCCGGAGCCATTTGTATGGAACAGATTTGCCAACCTTGTCATGGAAGCTACGCCTTGAAATTTGTATTGGGGCTGCAAGAGGACTCCATTATCTCCACACCGGTGCAGCTCAAAGCATAATTCACCGAGATGTGAAGACAACAAACATTCTCTTGGATGAGAGCTTTTTAGCCAAAGTTGCAGATTTTGGCCTCTCAAAAGCAGGTCCAGCTATAGATCAGACTCATGTCAGTACGGCTGTTAAGGGTAGTTTTGGTTACCTTGATCCTGAATACTTTAGAAGGCAGCAGCTCACTGAGAAATCAGACGTGTATTCGTTTGGAGTAGTTCTAATGGAAGTTCTTTGCACAAGACCAGCTTTGAACCCGGTTCTTCCCAGAGAGCAAGTGAACATAGCAGAATGGGCAATGACCTGGCAAAAGAAGGGCATGCTGGACCAAGTCATGGACTCGAATCTGGCTGGGAAGGTAAATCCAGCTTCTCTTAAGAAGTTTGGTGAGACAGCTGAGAAGTGCCTTGCCGAGTATGGCGTTGACAGGCCATCAATGGGAGATGTCTTGTGGAATCTTGAATATGCTCTTCAGCTTGAGGAGACTTCGTCCGCGCTCATGGAACCAGAAGATAACAGCACAAACCACATACAAGACATCGAATTGACACCACTAGAGCCATTTGACAACAGTGTGAGTATGGTTGAGGGAGGGCACTCCGGCACTGATGACGACACTCAAGATGCTGCCACAAGTGCTGTGTTCTCTCAGCTAGTAAATCCTCGCGGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

844

Amino Acids

92.27

Weight (kDa)

5.41

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	36 - 385	1e-31	Malectin-like domain
Pkinase	PF00069	508 - 768	1.3e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	509 - 768	8e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54380
fragaria_vesca	FvH4_2g16820 FvH4_2g16820 FvH4_3g20780 FvH4_3g20780 FvH4_3g20780
malus_domestica	MD03G1221300.v1.1 MD11G1238700.v1.1
prunus_persica	Prupe.4G188000_v2.0.a1
pyrus_communis	pycom03g17020 pycom11g21030
rosa_chinensis	RchiOBHm_Chr5g0035071 RchiOBHm_Chr6g0280941
rosa_laevigata	RLG00000013014 RLG00000033592
rosa_multiflora	Rmu_sc0005362.1_g000028 Rmu_sc0023551.1_g000001 Rmu_sc0023552.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045340 Rroxscaffold_7G00187470
rosa_rugosa	Rorug05G0149600 Rorug06G0137100
rosa_samantha	Rh5AG242600 Rh5BG242200 Rh5CG273700 Rh5DG250800 Rh6AG249400 Rh6BG251500 Rh6CG252100 Rh6DG243900
rosa_wichuraiana	Rw5G022160 Rw6G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1399
Acc36I	ACCTGC	1 cut(s)	1943
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	28
AccB7I	CCANNNNNTGG	1 cut(s)	2194
AccBSI	CCGCTC	1 cut(s)	1750
AccI	GTMKAC	1 cut(s)	723
AccII	CGCG	2 cut(s)	2354, 2526
AccIII	TCCGGA	1 cut(s)	1752
AciI	CCGC	8 cut(s)	316, 666, 1465, 1536, 1669, 1748, 2352, 2526
AclI	AACGTT	1 cut(s)	462
AclWI	GGATC	1 cut(s)	2009
AcoI	YGGCCR	3 cut(s)	42, 1355, 1462
AcsI	RAATTY	4 cut(s)	196, 255, 1628, 1809
AcuI	CTGAAG	4 cut(s)	186, 453, 843, 2315
AdeI	CACNNNGTG	1 cut(s)	1678
AfaI	GTAC	6 cut(s)	30, 183, 396, 635, 915, 1984
AfiI	CCNNNNNNNGG	9 cut(s)	310, 568, 602, 1343, 1373, 1609, 1791, 2194, 2297
AflII	CTTAAG	1 cut(s)	2234
AflIII	ACRYGT	1 cut(s)	2058
AgeI	ACCGGT	1 cut(s)	1850
AjiI	CACGTC	1 cut(s)	2059
AjnI	CCWGG	2 cut(s)	1488, 2162
AjuI	GAANNNNNNNTTGG	2 cut(s)	1800, 1832
AleI	CACNNNNGTG	1 cut(s)	1851
AloI	GAACNNNNNNTCC	2 cut(s)	139, 171
Alw21I	GWGCWC	1 cut(s)	990
Alw26I	GTCTC	6 cut(s)	544, 1001, 1208, 1686, 2243, 2336
AlwI	GGATC	1 cut(s)	2009
Ama87I	CYCGRG	2 cut(s)	991, 1526
Aor13HI	TCCGGA	1 cut(s)	1752
AoxI	GGCC	9 cut(s)	42, 142, 301, 346, 604, 1355, 1462, 1939, 2288
ApeKI	GCWGC	6 cut(s)	1434, 1823, 1856, 2035, 2038, 2486
ApoI	RAATTY	4 cut(s)	196, 255, 1628, 1809
AsiGI	ACCGGT	1 cut(s)	1850
Asp700I	GAANNNNTTC	1 cut(s)	407
Asp718I	GGTACC	1 cut(s)	28
AspLEI	GCGC	2 cut(s)	367, 2356
AspS9I	GGNCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
AsuC2I	CCSGG	2 cut(s)	548, 2117
AsuHPI	GGTGA	8 cut(s)	16, 478, 655, 1031, 1209, 1658, 1865, 2258
AsuII	TTCGAA	1 cut(s)	122
AsuNHI	GCTAGC	2 cut(s)	209, 1430
AvaI	CYCGRG	2 cut(s)	991, 1526
AvaII	GGWCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
AxyI	CCTNAGG	1 cut(s)	1063
BaeGI	GKGCMC	1 cut(s)	2457
BalI	TGGCCA	2 cut(s)	44, 1357
BanI	GGYRCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	1892
Bbv12I	GWGCWC	1 cut(s)	990
BbvI	GCAGC	6 cut(s)	1421, 1810, 1868, 2047, 2050, 2473
BccI	CCATC	5 cut(s)	497, 595, 1175, 1565, 2299
BceAI	ACGGC	2 cut(s)	1018, 2001
BcgI	CGANNNNNNTGC	2 cut(s)	713, 747
BciT130I	CCWGG	2 cut(s)	1490, 2164
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	2 cut(s)	548, 2117
BcoDI	GTCTC	6 cut(s)	544, 1001, 1208, 1686, 2243, 2336
BfaI	CTAG	6 cut(s)	210, 953, 1431, 1565, 2414, 2513
BfmI	CTRYAG	3 cut(s)	732, 1269, 1962
BfrI	CTTAAG	1 cut(s)	2234
BfuAI	ACCTGC	1 cut(s)	1943
BisI	GCNGC	7 cut(s)	1435, 1465, 1824, 1857, 2036, 2039, 2487
BlsI	GCNGC	7 cut(s)	1436, 1466, 1825, 1858, 2037, 2040, 2488
Bme1390I	CCNGG	4 cut(s)	548, 1490, 2117, 2164
Bme18I	GGWCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
BmeT110I	CYCGRG	2 cut(s)	991, 1526
BmgBI	CACGTC	1 cut(s)	2059
BmgT120I	GGNCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
BmiI	GGNNCC	6 cut(s)	30, 70, 314, 654, 1757, 2364
BmrFI	CCNGG	4 cut(s)	548, 1490, 2117, 2164
BmrI	ACTGGG	2 cut(s)	814, 1206
BmsI	GCATC	5 cut(s)	826, 1322, 1446, 1483, 2473
BmtI	GCTAGC	2 cut(s)	213, 1434
BmuI	ACTGGG	2 cut(s)	814, 1206
BoxI	GACNNNNGTC	1 cut(s)	1976
BpiI	GAAGAC	1 cut(s)	1892
BpmI	CTGGAG	1 cut(s)	199
Bpu14I	TTCGAA	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	2357, 2463
BpuMI	CCSGG	2 cut(s)	548, 2117
BsaI	GGTCTC	1 cut(s)	544
BsaJI	CCNNGG	4 cut(s)	139, 828, 1342, 1352
BsaWI	WCCGGW	2 cut(s)	1752, 1850
BsaXI	ACNNNNNCTCC	4 cut(s)	992, 1022, 2333, 2363
Bsc4I	CCNNNNNNNGG	9 cut(s)	310, 568, 602, 1343, 1373, 1609, 1791, 2194, 2297
Bse118I	RCCGGY	2 cut(s)	303, 1850
Bse1I	ACTGG	5 cut(s)	216, 759, 809, 1021, 1212
Bse21I	CCTNAGG	1 cut(s)	1063
Bse3DI	GCAATG	2 cut(s)	1168, 2163
BseAI	TCCGGA	1 cut(s)	1752
BseBI	CCWGG	2 cut(s)	1490, 2164
BseDI	CCNNGG	4 cut(s)	139, 828, 1342, 1352
BseGI	GGATG	5 cut(s)	556, 1186, 1348, 1498, 1912
BseLI	CCNNNNNNNGG	9 cut(s)	310, 568, 602, 1343, 1373, 1609, 1791, 2194, 2297
BseMI	GCAATG	2 cut(s)	1168, 2163
BseMII	CTCAG	8 cut(s)	11, 357, 1077, 1397, 1629, 2037, 2247, 2522
BseNI	ACTGG	5 cut(s)	216, 759, 809, 1021, 1212
BseRI	GAGGAG	2 cut(s)	1051, 2354
BseSI	GKGCMC	1 cut(s)	2457
BseXI	GCAGC	6 cut(s)	1421, 1810, 1868, 2047, 2050, 2473
BseYI	CCCAGC	1 cut(s)	2210
BsgI	GTGCAG	2 cut(s)	597, 1875
Bsh1236I	CGCG	2 cut(s)	2354, 2526
BshFI	GGCC	9 cut(s)	44, 144, 303, 348, 606, 1357, 1464, 1941, 2290
BshNI	GGYRCC	1 cut(s)	28
BshTI	ACCGGT	1 cut(s)	1850
BsiHKAI	GWGCWC	1 cut(s)	990
BsiHKCI	CYCGRG	2 cut(s)	991, 1526
BsiSI	CCGG	6 cut(s)	304, 548, 1753, 1851, 2117, 2460
BslFI	GGGAC	1 cut(s)	1588
BslI	CCNNNNNNNGG	9 cut(s)	310, 568, 602, 1343, 1373, 1609, 1791, 2194, 2297
BsmAI	GTCTC	6 cut(s)	544, 1001, 1208, 1686, 2243, 2336
BsmFI	GGGAC	1 cut(s)	1588
BsnI	GGCC	9 cut(s)	44, 144, 303, 348, 606, 1357, 1464, 1941, 2290
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	2 cut(s)	991, 1526
Bsp119I	TTCGAA	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	990, 2457
Bsp13I	TCCGGA	1 cut(s)	1752
Bsp143I	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
Bsp19I	CCATGG	2 cut(s)	828, 1352
BspACI	CCGC	8 cut(s)	316, 666, 1465, 1536, 1669, 1748, 2352, 2526
BspANI	GGCC	9 cut(s)	44, 144, 303, 348, 606, 1357, 1464, 1941, 2290
BspCNI	CTCAG	8 cut(s)	12, 356, 1076, 1396, 1630, 2038, 2248, 2521
BspEI	TCCGGA	1 cut(s)	1752
BspFNI	CGCG	2 cut(s)	2354, 2526
BspLI	GGNNCC	6 cut(s)	30, 70, 314, 654, 1757, 2364
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	1943
BspOI	GCTAGC	2 cut(s)	213, 1434
BspPI	GGATC	1 cut(s)	2009
BspQI	GCTCTTC	1 cut(s)	2334
BspT104I	TTCGAA	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	2234
BspTNI	GGTCTC	1 cut(s)	544
BsrBI	CCGCTC	1 cut(s)	1750
BsrDI	GCAATG	2 cut(s)	1168, 2163
BsrFI	RCCGGY	2 cut(s)	303, 1850
BsrI	ACTGG	5 cut(s)	216, 759, 809, 1021, 1212
BssAI	RCCGGY	2 cut(s)	303, 1850
BssECI	CCNNGG	4 cut(s)	139, 828, 1342, 1352
BssMI	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
BssT1I	CCWWGG	4 cut(s)	139, 828, 1342, 1352
Bst2UI	CCWGG	2 cut(s)	1490, 2164
Bst4CI	ACNGT	4 cut(s)	376, 506, 1087, 2432
Bst6I	CTCTTC	1 cut(s)	2334
BstAFI	CTTAAG	1 cut(s)	2234
BstAPI	GCANNNNNTGC	1 cut(s)	1289
BstBI	TTCGAA	1 cut(s)	122
BstC8I	GCNNGC	4 cut(s)	211, 305, 1432, 2180
BstDEI	CTNAG	8 cut(s)	20, 343, 1063, 1383, 1638, 2046, 2256, 2508
BstDSI	CCRYGG	2 cut(s)	828, 1352
BstEII	GGTNACC	1 cut(s)	2006
BstF5I	GGATG	5 cut(s)	556, 1186, 1348, 1498, 1912
BstFNI	CGCG	2 cut(s)	2354, 2526
BstHHI	GCGC	2 cut(s)	367, 2356
BstKTI	GATC	5 cut(s)	568, 1158, 1610, 1969, 2017
BstMAI	GTCTC	6 cut(s)	544, 1001, 1208, 1686, 2243, 2336
BstMBI	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
BstMWI	GCNNNNNNNGC	8 cut(s)	1280, 1289, 1363, 1542, 1928, 1958, 2153, 2495
BstNI	CCWGG	2 cut(s)	1490, 2164
BstNSI	RCATGY	2 cut(s)	743, 2182
BstPAI	GACNNNNGTC	1 cut(s)	1976
BstPI	GGTNACC	1 cut(s)	2006
BstSCI	CCNGG	4 cut(s)	546, 1488, 2115, 2162
BstSFI	CTRYAG	3 cut(s)	732, 1269, 1962
BstSLI	GKGCMC	1 cut(s)	2457
BstUI	CGCG	2 cut(s)	2354, 2526
BstV1I	GCAGC	6 cut(s)	1421, 1810, 1868, 2047, 2050, 2473
BstV2I	GAAGAC	1 cut(s)	1892
BstXI	CCANNNNNNTGG	1 cut(s)	1766
Bsu36I	CCTNAGG	1 cut(s)	1063
BsuRI	GGCC	9 cut(s)	44, 144, 303, 348, 606, 1357, 1464, 1941, 2290
BtgI	CCRYGG	2 cut(s)	828, 1352
BtrI	CACGTC	1 cut(s)	2059
BtsCI	GGATG	5 cut(s)	556, 1186, 1348, 1498, 1912
BtsI	GCAGTG	3 cut(s)	164, 741, 816
BveI	ACCTGC	1 cut(s)	1943
Cac8I	GCNNGC	4 cut(s)	211, 305, 1432, 2180
CfoI	GCGC	2 cut(s)	367, 2356
Cfr10I	RCCGGY	2 cut(s)	303, 1850
Cfr13I	GGNCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
Csp6I	GTAC	6 cut(s)	29, 182, 395, 634, 914, 1983
CspAI	ACCGGT	1 cut(s)	1850
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviQI	GTAC	6 cut(s)	29, 182, 395, 634, 914, 1983
DdeI	CTNAG	8 cut(s)	20, 343, 1063, 1383, 1638, 2046, 2256, 2508
DpnI	GATC	5 cut(s)	567, 1157, 1609, 1968, 2016
DpnII	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
DraIII	CACNNNGTG	1 cut(s)	1678
DrdI	GACNNNNNNGTC	1 cut(s)	1399
DseDI	GACNNNNNNGTC	1 cut(s)	1399
EaeI	YGGCCR	3 cut(s)	42, 1355, 1462
Eam1104I	CTCTTC	1 cut(s)	2334
EarI	CTCTTC	1 cut(s)	2334
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	4 cut(s)	139, 828, 1342, 1352
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
Eco57I	CTGAAG	4 cut(s)	186, 453, 843, 2315
Eco81I	CCTNAGG	1 cut(s)	1063
Eco88I	CYCGRG	2 cut(s)	991, 1526
Eco91I	GGTNACC	1 cut(s)	2006
EcoO109I	RGGNCCY	1 cut(s)	653
EcoO65I	GGTNACC	1 cut(s)	2006
EcoRI	GAATTC	1 cut(s)	1628
EcoRII	CCWGG	2 cut(s)	1488, 2162
EcoT14I	CCWWGG	4 cut(s)	139, 828, 1342, 1352
ErhI	CCWWGG	4 cut(s)	139, 828, 1342, 1352
FalI	AAGNNNNNCTT	2 cut(s)	2092, 2124
FaqI	GGGAC	1 cut(s)	1588
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	723
Fnu4HI	GCNGC	7 cut(s)	1435, 1465, 1824, 1857, 2036, 2039, 2487
FokI	GGATG	5 cut(s)	563, 1193, 1335, 1505, 1919
Fsp4HI	GCNGC	7 cut(s)	1435, 1465, 1824, 1857, 2036, 2039, 2487
FspBI	CTAG	6 cut(s)	210, 953, 1431, 1565, 2414, 2513
GlaI	GCGC	2 cut(s)	366, 2355
GluI	GCNGC	7 cut(s)	1435, 1465, 1824, 1857, 2036, 2039, 2487
GsaI	CCCAGC	1 cut(s)	2214
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	9 cut(s)	44, 144, 303, 348, 606, 1357, 1464, 1941, 2290
HapII	CCGG	6 cut(s)	304, 548, 1753, 1851, 2117, 2460
HhaI	GCGC	2 cut(s)	367, 2356
Hin6I	GCGC	2 cut(s)	365, 2354
HinP1I	GCGC	2 cut(s)	365, 2354
HincII	GTYRAC	4 cut(s)	724, 751, 1404, 2284
HindII	GTYRAC	4 cut(s)	724, 751, 1404, 2284
HindIII	AAGCTT	1 cut(s)	1658
HpaII	CCGG	6 cut(s)	304, 548, 1753, 1851, 2117, 2460
HphI	GGTGA	8 cut(s)	16, 478, 655, 1031, 1209, 1658, 1865, 2258
Hpy166II	GTNNAC	7 cut(s)	724, 751, 1217, 1404, 1552, 2140, 2284
Hpy188I	TCNGA	9 cut(s)	472, 1134, 1265, 1386, 1612, 1634, 1711, 1971, 2056
Hpy8I	GTNNAC	7 cut(s)	724, 751, 1217, 1404, 1552, 2140, 2284
HpyAV	CCTTC	9 cut(s)	240, 293, 507, 632, 725, 1217, 2025, 2167, 2209
HpyCH4III	ACNGT	4 cut(s)	376, 506, 1087, 2432
HpyCH4IV	ACGT	2 cut(s)	462, 2058
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1280, 1289, 1363, 1542, 1928, 1958, 2153, 2495
HpyF3I	CTNAG	8 cut(s)	20, 343, 1063, 1383, 1638, 2046, 2256, 2508
HpySE526I	ACGT	2 cut(s)	462, 2058
HspAI	GCGC	2 cut(s)	365, 2354
Kpn2I	TCCGGA	1 cut(s)	1752
KpnI	GGTACC	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	303
KroNI	GCCGGC	1 cut(s)	305
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
LguI	GCTCTTC	1 cut(s)	2334
LmnI	GCTCC	7 cut(s)	68, 218, 598, 1173, 1265, 1755, 1755
Lsp1109I	GCAGC	6 cut(s)	1421, 1810, 1868, 2047, 2050, 2473
LweI	GCATC	5 cut(s)	826, 1322, 1446, 1483, 2473
MaeI	CTAG	6 cut(s)	210, 953, 1431, 1565, 2414, 2513
MaeII	ACGT	2 cut(s)	462, 2058
MaeIII	GTNAC	7 cut(s)	379, 463, 781, 1019, 1117, 1664, 2006
MalI	GATC	5 cut(s)	567, 1157, 1609, 1968, 2016
MbiI	CCGCTC	1 cut(s)	1750
MboI	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
MfeI	CAATTG	1 cut(s)	528
MhlI	GDGCHC	2 cut(s)	990, 2457
MlsI	TGGCCA	2 cut(s)	44, 1357
MluNI	TGGCCA	2 cut(s)	44, 1357
MlyI	GAGTC	6 cut(s)	70, 1003, 1210, 1827, 1966, 2192
MmeI	TCCRAC	3 cut(s)	1002, 1080, 1243
Mox20I	TGGCCA	2 cut(s)	44, 1357
MroI	TCCGGA	1 cut(s)	1752
MroNI	GCCGGC	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	407
MscI	TGGCCA	2 cut(s)	44, 1357
MseI	TTAA	6 cut(s)	84, 522, 641, 1590, 1992, 2235
MslI	CAYNNNNRTG	6 cut(s)	50, 777, 921, 1764, 1851, 1878
Msp20I	TGGCCA	2 cut(s)	44, 1357
MspA1I	CMGCKG	2 cut(s)	668, 2255
MspCI	CTTAAG	1 cut(s)	2234
MspI	CCGG	6 cut(s)	304, 548, 1753, 1851, 2117, 2460
MspR9I	CCNGG	4 cut(s)	548, 1490, 2117, 2164
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	2 cut(s)	1490, 2164
MvnI	CGCG	2 cut(s)	2354, 2526
MwoI	GCNNNNNNNGC	8 cut(s)	1280, 1289, 1363, 1542, 1928, 1958, 2153, 2495
NaeI	GCCGGC	1 cut(s)	305
NciI	CCSGG	2 cut(s)	548, 2117
NcoI	CCATGG	2 cut(s)	828, 1352
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
NgoMIV	GCCGGC	1 cut(s)	303
NheI	GCTAGC	2 cut(s)	209, 1430
NlaIV	GGNNCC	6 cut(s)	30, 70, 314, 654, 1757, 2364
NmeAIII	GCCGAG	1 cut(s)	2296
NmuCI	GTSAC	5 cut(s)	379, 781, 1019, 1117, 1664
NspI	RCATGY	2 cut(s)	743, 2182
NspV	TTCGAA	1 cut(s)	122
OliI	CACNNNNGTG	1 cut(s)	1851
PaeI	GCATGC	1 cut(s)	2182
PaeR7I	CTCGAG	1 cut(s)	991
PciSI	GCTCTTC	1 cut(s)	2334
PdiI	GCCGGC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	407
PfeI	GAWTC	5 cut(s)	1070, 1103, 1717, 2203, 2314
PflFI	GACNNNGTC	2 cut(s)	2189, 2347
PflMI	CCANNNNNTGG	1 cut(s)	2194
PfoI	TCCNGGA	2 cut(s)	546, 1488
PinAI	ACCGGT	1 cut(s)	1850
PkrI	GCNGC	7 cut(s)	1436, 1466, 1825, 1858, 2037, 2040, 2488
PleI	GAGTC	6 cut(s)	69, 1002, 1209, 1827, 1966, 2192
PpsI	GAGTC	6 cut(s)	69, 1002, 1209, 1827, 1966, 2192
PpuMI	RGGWCCY	1 cut(s)	653
PshAI	GACNNNNGTC	1 cut(s)	1976
Psp1406I	AACGTT	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	1488, 2162
PspEI	GGTNACC	1 cut(s)	2006
PspFI	CCCAGC	1 cut(s)	2210
PspGI	CCWGG	2 cut(s)	1488, 2162
PspN4I	GGNNCC	6 cut(s)	30, 70, 314, 654, 1757, 2364
PspPI	GGNCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
PspPPI	RGGWCCY	1 cut(s)	653
PstI	CTGCAG	1 cut(s)	736
PsyI	GACNNNGTC	2 cut(s)	2189, 2347
PvuII	CAGCTG	1 cut(s)	2255
RsaI	GTAC	6 cut(s)	30, 183, 396, 635, 915, 1984
RsaNI	GTAC	6 cut(s)	29, 182, 395, 634, 914, 1983
RseI	CAYNNNNRTG	6 cut(s)	50, 777, 921, 1764, 1851, 1878
SalI	GTCGAC	1 cut(s)	722
SapI	GCTCTTC	1 cut(s)	2334
SaqAI	TTAA	6 cut(s)	84, 522, 641, 1590, 1992, 2235
SatI	GCNGC	7 cut(s)	1435, 1465, 1824, 1857, 2036, 2039, 2487
Sau3AI	GATC	5 cut(s)	565, 1155, 1607, 1966, 2014
Sau96I	GGNCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
SchI	GAGTC	6 cut(s)	70, 1003, 1210, 1827, 1966, 2192
ScrFI	CCNGG	4 cut(s)	548, 1490, 2117, 2164
SduI	GDGCHC	2 cut(s)	990, 2457
SfaNI	GCATC	5 cut(s)	826, 1322, 1446, 1483, 2473
SfcI	CTRYAG	3 cut(s)	732, 1269, 1962
Sfr274I	CTCGAG	1 cut(s)	991
SfuI	TTCGAA	1 cut(s)	122
SgrAI	CRCCGGYG	1 cut(s)	1850
SinI	GGWCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
SlaI	CTCGAG	1 cut(s)	991
SmiMI	CAYNNNNRTG	6 cut(s)	50, 777, 921, 1764, 1851, 1878
SmlI	CTYRAG	4 cut(s)	991, 2234, 2336, 2478
SmoI	CTYRAG	4 cut(s)	991, 2234, 2336, 2478
SphI	GCATGC	1 cut(s)	2182
SsiI	CCGC	8 cut(s)	316, 666, 1465, 1536, 1669, 1748, 2352, 2526
SspMI	CTAG	6 cut(s)	210, 953, 1431, 1565, 2414, 2513
StyD4I	CCNGG	4 cut(s)	546, 1488, 2115, 2162
StyI	CCWWGG	4 cut(s)	139, 828, 1342, 1352
TaaI	ACNGT	4 cut(s)	376, 506, 1087, 2432
TaiI	ACGT	2 cut(s)	465, 2061
TaqI	TCGA	9 cut(s)	93, 122, 253, 723, 992, 999, 1655, 2201, 2400
TatI	WGTACW	2 cut(s)	181, 394
TauI	GCSGC	1 cut(s)	1467
TfiI	GAWTC	5 cut(s)	1070, 1103, 1717, 2203, 2314
Tru1I	TTAA	6 cut(s)	84, 522, 641, 1590, 1992, 2235
Tru9I	TTAA	6 cut(s)	84, 522, 641, 1590, 1992, 2235
TseFI	GTSAC	5 cut(s)	379, 781, 1019, 1117, 1664
TseI	GCWGC	6 cut(s)	1434, 1823, 1856, 2035, 2038, 2486
Tsp45I	GTSAC	5 cut(s)	379, 781, 1019, 1117, 1664
TspDTI	ATGAA	8 cut(s)	26, 165, 567, 707, 958, 1462, 1716, 1743
Tth111I	GACNNNGTC	2 cut(s)	2189, 2347
Van91I	CCANNNNNTGG	1 cut(s)	2194
Vha464I	CTTAAG	1 cut(s)	2234
VpaK11BI	GGWCC	6 cut(s)	313, 653, 1097, 1745, 1955, 2185
XapI	RAATTY	4 cut(s)	196, 255, 1628, 1809
XceI	RCATGY	2 cut(s)	743, 2182
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1788
XhoI	CTCGAG	1 cut(s)	991
XmiI	GTMKAC	1 cut(s)	723
XmnI	GAANNNNTTC	1 cut(s)	407
XspI	CTAG	6 cut(s)	210, 953, 1431, 1565, 2414, 2513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.