Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004410

Physical Location & Seq

Genomic Coordinates Forward (+)

19388212 .. 19404519

Gene Structure 16308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0137100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3264 bp

ATGGATCCAAGTCCTAAAAAGACTTTCGGGTCATCAAAACCCGAAGCCCAGTTAGTAGGCCCAAATGAGAACCCGAAGGGTTGTAAACCCACCCTGAGCGGTTTTAGTTCCACTCCATTCGCCCGCCGAGCAGGAGCAGAAACTGAAGCAGAAGCAGAGATGGGGAAGAAGAAAAGCAAAGATGGGAGCCATCCCAGAACCGAAACCGAGCACTGTACCTCCACCGTCTTCGTCTCCAATTTGCCCTACTCTTTCACCAATTCCCAGCTGGAGGAGACGTTCAGTGAAGTCGGACCGATCAGGCGGTGCTTTATGGTCACAAAAAAGGGGTCGACGGAGCACCGTGGTTTTGGCTTTGTTCAATTTGCTGTCACAACCGATGCTGATCGCTCCGTTGAGCTGAAGAATGGTGTGTCTGTTGGAGGTCGAAAGATTGCTGTTAAGCATGCCATGCACCGTGCACCTTTTGAACAACGAAGATCAAAGAAAGATCAAGGTTCTGAATTGGATGAAACTATGAATTCAAAAAATGGCAAGGATGGAGACAATCCTAAAGAGGGAAATGGTGCTTCAAACTTGGATACAAGAGAGATCAAATTGGATAAGACCATGAAGTCAAAGAATGATAAGGATGCTGGCAATTTGAAAAAGGAAAAGGATGCTTCAAAGTTGGAGGAAAAAGAAAAAACTGTGAAATCCAGAAAACCAGTAGCACCATGTAAAGATGTAGTGGCAAAAGTGGGAGGTTCTGAAAAGCAGAGGGTTGCTAGGACTGTTATATTTGGTGGCCTTCTCAATGCTGGTATGGCGGAAGATGTTCATCGCCAAGCTAGGGAGGTTGGCGATGTGTGTTCTATAACTTATCCTTTTCCCAGAGAAGAGCTTCAACAACATGGTCTTGTACAAGATGGATGCAAAATGGATGCCTCAGCTGTACTTTACAACAGTGTTAAATCAGCTCATGCTTCTGTTGCAATGTTACACCAAAAGGAGATAAAAGGAGGAATTGTTTGGGCCCGTCAGCTGGGTGGGGAGGGTTCCAAGACTCGGAAGTGGAAGCTCATTGTCAGAAATCTTCCTTTCAAGGCCAAAGTCAGTGATATCAAAGATATGTTTTCATCTGCCGGATTTGTCTGGGAGGTTTATATACCACAGAATTCTGATACAGGGATGTCTAAAGGATTTGCATTCGTCAAATTCACACGCAGACAAGATGCGGAAAATGCAATAAAAAAGTTCAATGGACAAAAACTTCTTAAAAGACCAATAGCTGTGGACTGGGCTGTTCCTAAGCAGATATATGGTAGTGGCAATGACACCCTTGCTTCAGAAGATGGAGAAAAGGGCGGAAGAGATGGGGGAAATGATAGCAGCAATGATGATTTTGAGGGTGATGCTGGAGATGCATGTAAAAAGTCCCAGCACCTTGATGGGATTGACAGTGCTTCAGATGACTCCAATACCACAGAGCTGAAAGACATCCCTACTGAAATTGATTTTGAGGAGGAAGCAGACATAGCAAGAAAAGTTCTAAAAAATTTGACCATGCCCTCTGGTACAGTAACTGCTGTTGATAATTCTGCATTGCCCAAAGGTAACAAGGAGCCAACTATTGATTTTGAGGAGGAAGCAGACATTGCAAGAAAAGTTCTAAAAAAGTTTACCACACCCTCTGGTACAGTAACTACTGTTGATGATTCTGCACTGCCCGTAAGCAACAAGGAGCCAACTATTGAAGAATCTGCTAATGAGACTAGTAAGTTATCTTCCGAGACTGCGCCTAATAAATTATCTTCTGAAAGTGCCAGTGCATCAGATGTTGCTAAACCACAAACGGAAGAAGTAGATGATTTGCATAGAACAATTTTCATCAGCAACCTTCCTTTTGAGATCACTAATGAAGAAGTCAAACAAAGGTTTTCTGCTTTCGGGCAAGTGCAATCTTTTGTCCCAGTTCTTCATCCACTTACCAAGCGACCAAAAGGAACTGGCTTTCTCAAGTTTAAGACAATAGATGCAGTGAATTCTGCTGTTTCAGCTGGTAGTGCTGCATCTGGCTTGGGAATTTTTCTCAAGGGTAGACAACTGACAGTCTTCCAGGCTTTGGATAGAAAATCGGCTCACGAGAAGGAAGAAAATATGGCCAAAAAAGAGGACATAGACCACCGCAATCTCTATTTGGCAAAGGAAGGTCTTATTCTTGCGGGAACTCCAGCTGCAGAAGGGGTTTCAGCTAATGATATGTCAAAACGCCAAATGTTGGAGAGGAGCAAGGCGATGAAGCTTAAATCTCCAAATTTTCATGTTTCAAAGACAAGATTAGTTATGTACAATTTGCCAAAGTCCATGACTGAAAAACAGCTTAAGAAACTTTGTATGGATGCTGTTACCTCACGAGCTAAGCTACAAAAACCTGTGATTCGACAGATAAAGTGCTTGAAGGATGTGAAAAAGGGAAAGATTGTCGCAAAGAACCACTCTCGCGGTGTTGCTTTCATTGAGTTTACAGAGCACCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAACAATCCTGAAACTTTTGGTTCAGAACATCGGCCAATTGTGGAGTTTGCACTTGATAATGTTCAGAAATTGAGAGCACGTCAGGTATCACAACAAACTCAGCAGCATGCCGCTAATGGTAATCAGAAAGAGGGGCGGCAATTTGATCACTCAAATAGAGCAGATGCCCACCCAAGCAAGAAGTTTGAAAACCGGAGAGACAAAGGTGACAAGCGAAAACTGGATGAGGTAGTACCAAATAAAGAGGGTGAAGTGGAAAATAGGGGAAGTGATGGAGCTGCCACTGAAGGGCAGAGATTTCCCAAGAGGCAGAAGAATGGTTCAGATAGAAAGGCAGAAAAGATTTCATCAAAAAAAGTACTGGGAGGCTTATCGGTAGAAGGTTCAAAACGTGAAAGTCATCATCAAGATGGCAGGAAGGCTGGCGGTGGAAGATCGTTTGCAGGTGAAATCAAGGCAGTTGATGCGCCCACATCAATATCTTCGAGAAAGACAGATGTGGAACCAAAGAAGAGGAAGCTGCAGGAGCAAAATTACACGGAGGGAGGAGAGAACATGATGAGAAGAAGAAGGCCGAAGAATAAAGACCCAACAGGGCGGGATGTTACAGATAAACTTGACATGCTGATTGAAAAATATAGATCCACGTTCTCAAATCAGAATTCCTTCCAAAAAGGTGGCGGAAGGCAAGATTCAATTAGAAAATGGATTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046777 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

1087

Amino Acids

119.91

Weight (kDa)

9.4

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	76 - 145	3.2e-16	RNA recognition motif
RRM_1	PF00076	354 - 423	4e-16	RNA recognition motif
RRM_1	PF00076	622 - 679	1.2e-12	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54380
fragaria_vesca	FvH4_2g16820 FvH4_2g16820 FvH4_3g20780 FvH4_3g20780 FvH4_3g20780
malus_domestica	MD03G1221300.v1.1 MD11G1238700.v1.1
prunus_persica	Prupe.4G188000_v2.0.a1
pyrus_communis	pycom03g17020 pycom11g21030
rosa_chinensis	RchiOBHm_Chr5g0035071 RchiOBHm_Chr6g0280941
rosa_laevigata	RLG00000013014 RLG00000033592
rosa_multiflora	Rmu_sc0005362.1_g000028 Rmu_sc0023551.1_g000001 Rmu_sc0023552.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045340 Rroxscaffold_7G00187470
rosa_rugosa	Rorug05G0149600 Rorug06G0137100
rosa_samantha	Rh5AG242600 Rh5BG242200 Rh5CG273700 Rh5DG250800 Rh6AG249400 Rh6BG251500 Rh6CG252100 Rh6DG243900
rosa_wichuraiana	Rw5G022160 Rw6G021580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2981
AasI	GACNNNNNNGTC	2 cut(s)	28, 613
Acc36I	ACCTGC	1 cut(s)	2981
AccB7I	CCANNNNNTGG	2 cut(s)	2104, 2260
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	2 cut(s)	332, 2080
AccII	CGCG	1 cut(s)	2484
AclWI	GGATC	2 cut(s)	12, 3183
AcoI	YGGCCR	2 cut(s)	2142, 2579
AcsI	RAATTY	8 cut(s)	520, 1156, 1196, 1537, 2023, 2064, 2296, 3208
AcuI	CTGAAG	5 cut(s)	165, 422, 1311, 1431, 2853
AfaI	GTAC	8 cut(s)	217, 903, 936, 1558, 1678, 2330, 2781, 2907
AfiI	CCNNNNNNNGG	8 cut(s)	271, 557, 832, 1024, 1047, 2104, 2260, 2835
AflII	CTTAAG	1 cut(s)	2363
AhlI	ACTAGT	1 cut(s)	1754
AjiI	CACGTC	1 cut(s)	2627
AjnI	CCWGG	1 cut(s)	2097
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
Alw21I	GWGCWC	5 cut(s)	213, 342, 463, 2514, 2626
Alw26I	GTCTC	6 cut(s)	238, 269, 537, 1745, 1766, 2739
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	2 cut(s)	12, 3183
AlwNI	CAGNNNCTG	2 cut(s)	143, 1565
AoxI	GGCC	7 cut(s)	58, 787, 1014, 1086, 2142, 2579, 3119
ApaI	GGGCCC	1 cut(s)	1018
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	6 cut(s)	1371, 2048, 2216, 2650, 2825, 3067
ApoI	RAATTY	8 cut(s)	520, 1156, 1196, 1537, 2023, 2064, 2296, 3208
ArsI	GACNNNNNNTTYG	2 cut(s)	314, 346
Asp700I	GAANNNNTTC	3 cut(s)	816, 882, 3212
AspLEI	GCGC	2 cut(s)	1780, 3016
AspS9I	GGNCC	4 cut(s)	59, 293, 1014, 1015
AsuHPI	GGTGA	5 cut(s)	247, 1403, 2765, 2807, 3005
AvaII	GGWCC	1 cut(s)	293
BaeGI	GKGCMC	2 cut(s)	463, 1018
BalI	TGGCCA	1 cut(s)	2144
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	1018
BarI	GAAGNNNNNNTAC	2 cut(s)	1750, 1782
BauI	CACGAG	2 cut(s)	2123, 2394
BbsI	GAAGAC	2 cut(s)	220, 2086
Bbv12I	GWGCWC	5 cut(s)	213, 342, 463, 2514, 2626
BbvCI	CCTCAGC	1 cut(s)	928
BbvI	GCAGC	6 cut(s)	1383, 2035, 2203, 2662, 2812, 3054
BciT130I	CCWGG	1 cut(s)	2099
BciVI	GTATCC	1 cut(s)	574
BclI	TGATCA	1 cut(s)	2692
BcoDI	GTCTC	6 cut(s)	238, 269, 537, 1745, 1766, 2739
BcuI	ACTAGT	1 cut(s)	1754
BfaI	CTAG	3 cut(s)	768, 831, 1755
BfmI	CTRYAG	2 cut(s)	2217, 3068
BfrI	CTTAAG	1 cut(s)	2363
BfuAI	ACCTGC	1 cut(s)	2981
BfuI	GTATCC	1 cut(s)	574
BglI	GCCNNNNNGGC	1 cut(s)	2528
BisI	GCNGC	8 cut(s)	1372, 2049, 2217, 2651, 2658, 2684, 2826, 3068
BlpI	GCTNAGC	1 cut(s)	2400
BlsI	GCNGC	8 cut(s)	1373, 2050, 2218, 2652, 2659, 2685, 2827, 3069
BmcAI	AGTACT	1 cut(s)	2907
Bme1390I	CCNGG	1 cut(s)	2099
Bme18I	GGWCC	1 cut(s)	293
BmgBI	CACGTC	1 cut(s)	2627
BmgT120I	GGNCC	4 cut(s)	59, 293, 1014, 1015
BmiI	GGNNCC	7 cut(s)	6, 188, 1016, 1039, 1605, 1725, 3051
BmrFI	CCNGG	1 cut(s)	2099
BmrI	ACTGGG	4 cut(s)	43, 1288, 1946, 2918
BmuI	ACTGGG	4 cut(s)	43, 1288, 1946, 2918
BpiI	GAAGAC	2 cut(s)	220, 2086
BpmI	CTGGAG	3 cut(s)	290, 1419, 2196
Bpu10I	CCTNAGC	3 cut(s)	95, 928, 1290
Bpu1102I	GCTNAGC	1 cut(s)	2400
BpuEI	CTTGAG	2 cut(s)	1982, 2057
BsaBI	GATNNNNATC	2 cut(s)	384, 819
BsaJI	CCNNGG	1 cut(s)	343
BsaWI	WCCGGW	1 cut(s)	2739
BsaXI	ACNNNNNCTCC	6 cut(s)	203, 233, 263, 293, 993, 1023
Bsc4I	CCNNNNNNNGG	8 cut(s)	271, 557, 832, 1024, 1047, 2104, 2260, 2835
Bse1I	ACTGG	8 cut(s)	49, 707, 1283, 1806, 1952, 1993, 2772, 2913
Bse3DI	GCAATG	5 cut(s)	981, 1318, 1381, 1583, 1635
Bse8I	GATNNNNATC	2 cut(s)	384, 819
BseBI	CCWGG	1 cut(s)	2099
BseDI	CCNNGG	1 cut(s)	343
BseJI	GATNNNNATC	2 cut(s)	384, 819
BseLI	CCNNNNNNNGG	8 cut(s)	271, 557, 832, 1024, 1047, 2104, 2260, 2835
BseMI	GCAATG	5 cut(s)	981, 1318, 1381, 1583, 1635
BseMII	CTCAG	4 cut(s)	86, 942, 2525, 2660
BseNI	ACTGG	8 cut(s)	49, 707, 1283, 1806, 1952, 1993, 2772, 2913
BseRI	GAGGAG	5 cut(s)	287, 1517, 1637, 2281, 3108
BseSI	GKGCMC	2 cut(s)	463, 1018
BseXI	GCAGC	6 cut(s)	1383, 2035, 2203, 2662, 2812, 3054
BseYI	CCCAGC	3 cut(s)	264, 1024, 1419
BsgI	GTGCAG	1 cut(s)	1686
Bsh1236I	CGCG	1 cut(s)	2484
BshFI	GGCC	7 cut(s)	60, 789, 1016, 1088, 2144, 2581, 3121
BsiHKAI	GWGCWC	5 cut(s)	213, 342, 463, 2514, 2626
BsiSI	CCGG	2 cut(s)	1125, 2740
BslFI	GGGAC	2 cut(s)	1402, 1934
BslI	CCNNNNNNNGG	8 cut(s)	271, 557, 832, 1024, 1047, 2104, 2260, 2835
BsmAI	GTCTC	6 cut(s)	238, 269, 537, 1745, 1766, 2739
BsmBI	CGTCTC	2 cut(s)	238, 269
BsmFI	GGGAC	2 cut(s)	1402, 1934
BsmI	GAATGC	1 cut(s)	1187
BsnI	GGCC	7 cut(s)	60, 789, 1016, 1088, 2144, 2581, 3121
Bsp120I	GGGCCC	1 cut(s)	1014
Bsp1286I	GDGCHC	6 cut(s)	213, 342, 463, 1018, 2514, 2626
Bsp1407I	TGTACA	2 cut(s)	901, 2328
Bsp1720I	GCTNAGC	1 cut(s)	2400
BspANI	GGCC	7 cut(s)	60, 789, 1016, 1088, 2144, 2581, 3121
BspCNI	CTCAG	4 cut(s)	87, 941, 2526, 2659
BspFNI	CGCG	1 cut(s)	2484
BspLI	GGNNCC	7 cut(s)	6, 188, 1016, 1039, 1605, 1725, 3051
BspMAI	CTGCAG	2 cut(s)	2221, 3072
BspMI	ACCTGC	1 cut(s)	2981
BspPI	GGATC	2 cut(s)	12, 3183
BspQI	GCTCTTC	1 cut(s)	873
BspTI	CTTAAG	1 cut(s)	2363
BsrBI	CCGCTC	1 cut(s)	99
BsrDI	GCAATG	5 cut(s)	981, 1318, 1381, 1583, 1635
BsrGI	TGTACA	2 cut(s)	901, 2328
BsrI	ACTGG	8 cut(s)	49, 707, 1283, 1806, 1952, 1993, 2772, 2913
BssECI	CCNNGG	1 cut(s)	343
BssSI	CACGAG	2 cut(s)	2123, 2394
Bst2BI	CACGAG	2 cut(s)	2123, 2394
Bst2UI	CCWGG	1 cut(s)	2099
Bst6I	CTCTTC	3 cut(s)	873, 1345, 3053
BstAFI	CTTAAG	1 cut(s)	2363
BstAPI	GCANNNNNTGC	3 cut(s)	451, 1637, 3011
BstAUI	TGTACA	2 cut(s)	901, 2328
BstC8I	GCNNGC	6 cut(s)	124, 447, 637, 2520, 2655, 2971
BstDEI	CTNAG	6 cut(s)	95, 928, 1290, 2400, 2534, 2646
BstDSI	CCRYGG	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	2484
BstHHI	GCGC	2 cut(s)	1780, 3016
BstMAI	GTCTC	6 cut(s)	238, 269, 537, 1745, 1766, 2739
BstNI	CCWGG	1 cut(s)	2099
BstNSI	RCATGY	5 cut(s)	449, 1410, 2522, 2657, 3172
BstSCI	CCNGG	1 cut(s)	2097
BstSFI	CTRYAG	2 cut(s)	2217, 3068
BstSLI	GKGCMC	2 cut(s)	463, 1018
BstUI	CGCG	1 cut(s)	2484
BstV1I	GCAGC	6 cut(s)	1383, 2035, 2203, 2662, 2812, 3054
BstV2I	GAAGAC	2 cut(s)	220, 2086
BstX2I	RGATCY	2 cut(s)	4, 3188
BstXI	CCANNNNNNTGG	1 cut(s)	3224
BstYI	RGATCY	2 cut(s)	4, 3188
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	7 cut(s)	60, 789, 1016, 1088, 2144, 2581, 3121
BtgI	CCRYGG	1 cut(s)	343
BtgZI	GCGATG	3 cut(s)	806, 858, 2291
BtrI	CACGTC	1 cut(s)	2627
BtsI	GCAGTG	2 cut(s)	1703, 2025
BtsIMutI	CAGTG	9 cut(s)	211, 289, 952, 1102, 1447, 1703, 1813, 2025, 2829
BveI	ACCTGC	1 cut(s)	2981
Cac8I	GCNNGC	6 cut(s)	124, 447, 637, 2520, 2655, 2971
CaiI	CAGNNNCTG	2 cut(s)	143, 1565
CfoI	GCGC	2 cut(s)	1780, 3016
Cfr13I	GGNCC	4 cut(s)	59, 293, 1014, 1015
CpoI	CGGWCCG	1 cut(s)	293
Csp6I	GTAC	8 cut(s)	216, 902, 935, 1557, 1677, 2329, 2780, 2906
CspCI	CAANNNNNGTGG	2 cut(s)	1254, 1289
CspI	CGGWCCG	1 cut(s)	293
CviQI	GTAC	8 cut(s)	216, 902, 935, 1557, 1677, 2329, 2780, 2906
DdeI	CTNAG	6 cut(s)	95, 928, 1290, 2400, 2534, 2646
DrdI	GACNNNNNNGTC	2 cut(s)	28, 613
DseDI	GACNNNNNNGTC	2 cut(s)	28, 613
EaeI	YGGCCR	2 cut(s)	2142, 2579
Eam1104I	CTCTTC	3 cut(s)	873, 1345, 3053
EarI	CTCTTC	3 cut(s)	873, 1345, 3053
EciI	GGCGGA	3 cut(s)	824, 1362, 3243
Eco24I	GRGCYC	1 cut(s)	1018
Eco32I	GATATC	1 cut(s)	1102
Eco47I	GGWCC	1 cut(s)	293
Eco57I	CTGAAG	5 cut(s)	165, 422, 1311, 1431, 2853
EcoRI	GAATTC	4 cut(s)	520, 1156, 2023, 3208
EcoRII	CCWGG	1 cut(s)	2097
EcoRV	GATATC	1 cut(s)	1102
EcoT22I	ATGCAT	1 cut(s)	1408
EcoT38I	GRGCYC	1 cut(s)	1018
Esp3I	CGTCTC	2 cut(s)	238, 269
FaqI	GGGAC	2 cut(s)	1402, 1934
FauI	CCCGC	3 cut(s)	131, 2197, 3138
FbaI	TGATCA	1 cut(s)	2692
FblI	GTMKAC	2 cut(s)	332, 2080
Fnu4HI	GCNGC	8 cut(s)	1372, 2049, 2217, 2651, 2658, 2684, 2826, 3068
FriOI	GRGCYC	1 cut(s)	1018
Fsp4HI	GCNGC	8 cut(s)	1372, 2049, 2217, 2651, 2658, 2684, 2826, 3068
FspBI	CTAG	3 cut(s)	768, 831, 1755
GlaI	GCGC	2 cut(s)	1779, 3015
GluI	GCNGC	8 cut(s)	1372, 2049, 2217, 2651, 2658, 2684, 2826, 3068
GsaI	CCCAGC	3 cut(s)	268, 1028, 1423
GsuI	CTGGAG	3 cut(s)	290, 1419, 2196
HaeIII	GGCC	7 cut(s)	60, 789, 1016, 1088, 2144, 2581, 3121
HapII	CCGG	2 cut(s)	1125, 2740
HhaI	GCGC	2 cut(s)	1780, 3016
Hin6I	GCGC	2 cut(s)	1778, 3014
HinP1I	GCGC	2 cut(s)	1778, 3014
HincII	GTYRAC	1 cut(s)	333
HindII	GTYRAC	1 cut(s)	333
HindIII	AAGCTT	1 cut(s)	2282
HinfI	GANTC	6 cut(s)	1045, 1454, 1697, 1739, 2419, 3239
HpaII	CCGG	2 cut(s)	1125, 2740
HphI	GGTGA	5 cut(s)	247, 1403, 2765, 2807, 3005
Hpy166II	GTNNAC	7 cut(s)	86, 333, 461, 1276, 1662, 2081, 2505
Hpy188III	TCNNGA	6 cut(s)	699, 2123, 2394, 2555, 2954, 3033
Hpy8I	GTNNAC	7 cut(s)	86, 333, 461, 1276, 1662, 2081, 2505
Hpy99I	CGWCG	1 cut(s)	337
HpyCH4IV	ACGT	4 cut(s)	278, 2626, 2938, 3194
HpyF3I	CTNAG	6 cut(s)	95, 928, 1290, 2400, 2534, 2646
HpySE526I	ACGT	4 cut(s)	278, 2626, 2938, 3194
HspAI	GCGC	2 cut(s)	1778, 3014
Ksp22I	TGATCA	1 cut(s)	2692
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	9 cut(s)	134, 186, 337, 395, 1603, 1723, 2268, 2822, 3073
Lsp1109I	GCAGC	6 cut(s)	1383, 2035, 2203, 2662, 2812, 3054
MaeI	CTAG	3 cut(s)	768, 831, 1755
MaeII	ACGT	4 cut(s)	278, 2626, 2938, 3194
MaeIII	GTNAC	9 cut(s)	316, 370, 978, 1561, 1595, 1681, 2386, 2753, 3151
MbiI	CCGCTC	1 cut(s)	99
MfeI	CAATTG	1 cut(s)	2583
MflI	RGATCY	2 cut(s)	4, 3188
MhlI	GDGCHC	6 cut(s)	213, 342, 463, 1018, 2514, 2626
MlsI	TGGCCA	1 cut(s)	2144
MluNI	TGGCCA	1 cut(s)	2144
MlyI	GAGTC	2 cut(s)	1039, 1448
MmeI	TCCRAC	4 cut(s)	271, 400, 651, 2241
Mox20I	TGGCCA	1 cut(s)	2144
Mph1103I	ATGCAT	1 cut(s)	1408
MroXI	GAANNNNTTC	3 cut(s)	816, 882, 3212
MscI	TGGCCA	1 cut(s)	2144
MseI	TTAA	8 cut(s)	441, 951, 1257, 2004, 2286, 2364, 2544, 3262
MslI	CAYNNNNRTG	3 cut(s)	1428, 2517, 2955
Msp20I	TGGCCA	1 cut(s)	2144
MspA1I	CMGCKG	5 cut(s)	268, 932, 1024, 2039, 2216
MspCI	CTTAAG	1 cut(s)	2363
MspI	CCGG	2 cut(s)	1125, 2740
MspR9I	CCNGG	1 cut(s)	2099
MunI	CAATTG	1 cut(s)	2583
Mva1269I	GAATGC	1 cut(s)	1187
MvaI	CCWGG	1 cut(s)	2099
MvnI	CGCG	1 cut(s)	2484
NlaIV	GGNNCC	7 cut(s)	6, 188, 1016, 1039, 1605, 1725, 3051
NmeAIII	GCCGAG	1 cut(s)	152
NmuCI	GTSAC	3 cut(s)	316, 370, 2753
NsiI	ATGCAT	1 cut(s)	1408
NspI	RCATGY	5 cut(s)	449, 1410, 2522, 2657, 3172
PaeI	GCATGC	3 cut(s)	449, 2522, 2657
PaqCI	CACCTGC	1 cut(s)	2981
PciSI	GCTCTTC	1 cut(s)	873
PctI	GAATGC	1 cut(s)	1187
PdmI	GAANNNNTTC	3 cut(s)	816, 882, 3212
PfeI	GAWTC	4 cut(s)	1697, 1739, 2419, 3239
PflMI	CCANNNNNTGG	2 cut(s)	2104, 2260
PkrI	GCNGC	8 cut(s)	1373, 2050, 2218, 2652, 2659, 2685, 2827, 3069
PleI	GAGTC	2 cut(s)	1039, 1448
PpsI	GAGTC	2 cut(s)	1039, 1448
Psp6I	CCWGG	1 cut(s)	2097
PspFI	CCCAGC	3 cut(s)	264, 1024, 1419
PspGI	CCWGG	1 cut(s)	2097
PspN4I	GGNNCC	7 cut(s)	6, 188, 1016, 1039, 1605, 1725, 3051
PspOMI	GGGCCC	1 cut(s)	1014
PspPI	GGNCC	4 cut(s)	59, 293, 1014, 1015
PstI	CTGCAG	2 cut(s)	2221, 3072
PstNI	CAGNNNCTG	2 cut(s)	143, 1565
PsuI	RGATCY	2 cut(s)	4, 3188
PvuII	CAGCTG	5 cut(s)	268, 932, 1024, 2039, 2216
RsaI	GTAC	8 cut(s)	217, 903, 936, 1558, 1678, 2330, 2781, 2907
RsaNI	GTAC	8 cut(s)	216, 902, 935, 1557, 1677, 2329, 2780, 2906
RseI	CAYNNNNRTG	3 cut(s)	1428, 2517, 2955
Rsr2I	CGGWCCG	1 cut(s)	293
RsrII	CGGWCCG	1 cut(s)	293
SalI	GTCGAC	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	8 cut(s)	441, 951, 1257, 2004, 2286, 2364, 2544, 3262
SatI	GCNGC	8 cut(s)	1372, 2049, 2217, 2651, 2658, 2684, 2826, 3068
Sau96I	GGNCC	4 cut(s)	59, 293, 1014, 1015
ScaI	AGTACT	1 cut(s)	2907
SchI	GAGTC	2 cut(s)	1039, 1448
ScrFI	CCNGG	1 cut(s)	2099
SduI	GDGCHC	6 cut(s)	213, 342, 463, 1018, 2514, 2626
SfcI	CTRYAG	2 cut(s)	2217, 3068
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	3 cut(s)	1428, 2517, 2955
SmlI	CTYRAG	3 cut(s)	1997, 2072, 2363
SmoI	CTYRAG	3 cut(s)	1997, 2072, 2363
SpeI	ACTAGT	1 cut(s)	1754
SphI	GCATGC	3 cut(s)	449, 2522, 2657
SspMI	CTAG	3 cut(s)	768, 831, 1755
StyD4I	CCNGG	1 cut(s)	2097
TaiI	ACGT	4 cut(s)	281, 2629, 2941, 3197
TaqI	TCGA	4 cut(s)	332, 427, 2422, 3032
TaqII	GACCGA	1 cut(s)	310
TatI	WGTACW	4 cut(s)	901, 934, 2328, 2905
TauI	GCSGC	2 cut(s)	2660, 2686
TfiI	GAWTC	4 cut(s)	1697, 1739, 2419, 3239
Tru1I	TTAA	8 cut(s)	441, 951, 1257, 2004, 2286, 2364, 2544, 3262
Tru9I	TTAA	8 cut(s)	441, 951, 1257, 2004, 2286, 2364, 2544, 3262
TscAI	CASTG	9 cut(s)	218, 289, 952, 1102, 1447, 1710, 1813, 2025, 2836
TseFI	GTSAC	3 cut(s)	316, 370, 2753
TseI	GCWGC	6 cut(s)	1371, 2048, 2216, 2650, 2825, 3067
Tsp45I	GTSAC	3 cut(s)	316, 370, 2753
TspGWI	ACGGA	4 cut(s)	350, 382, 1850, 3101
TspRI	CASTG	9 cut(s)	218, 289, 952, 1102, 1447, 1710, 1813, 2025, 2836
Van91I	CCANNNNNTGG	2 cut(s)	2104, 2260
Vha464I	CTTAAG	1 cut(s)	2363
VneI	GTGCAC	1 cut(s)	459
VpaK11BI	GGWCC	1 cut(s)	293
XapI	RAATTY	8 cut(s)	520, 1156, 1196, 1537, 2023, 2064, 2296, 3208
XceI	RCATGY	5 cut(s)	449, 1410, 2522, 2657, 3172
XcmI	CCANNNNNNNNNTGG	2 cut(s)	265, 1427
XmiI	GTMKAC	2 cut(s)	332, 2080
XmnI	GAANNNNTTC	3 cut(s)	816, 882, 3212
XspI	CTAG	3 cut(s)	768, 831, 1755
ZrmI	AGTACT	1 cut(s)	2907
Zsp2I	ATGCAT	1 cut(s)	1408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.