Rroxscaffold_2G00107670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017420
Physical Location & Seq
Reverse (-)
31676598 .. 31677634
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00107670.1

Sequence Viewer

Length: 636 bp
ATGAGCTTGGGGTGGCCACATCGGCACCGATGCGAAGTAAAAGCATGCCTCATGGCTTTACAACTTGCCATAGAACGACTTGCAAGCCGACCATTTGTGCTTGAGTCTCACTTTTTCCGAACACCCTTCATGACGTTCGAAGATTTTGGCTCATCCTTGGCACCGTCGGTCGGGTTAATCACCCGTACCACCAGGAGAATATTCAATGGAGTAAGTGCGAAAGGTTTGAGAATCGAACTGCTTCAAGGATTGCCCTGCTTGCTCGTGGTAGCAGGATTTCCATTCGATGTAGAAGTGAAGGCCGTGAAGCTTGCTTGTTCTATTGCCTTGGATTATAAGAGTTTGAAGATCGAGTTCGAAGGTGGAAGCGAATTATTGACTAACCAAGTTGTTGGAAGAACGCTTTTGGATTCAAAGTGGACAACAAGAAGGTTAGTGGATGATATAAAGCTTAGCTTAGGAGAGCTCACTGCAGGTTATTCCCGGTCCCATTGTGTGAAGACGGGCAATGTGGCGGCCTCCTACTTTTCGTCCCCGTTGTGTGAAAGCGAATTTGTTGAAGGAGGGCAGTGGATGGTTGATCTTGAAGAGATTTTGAAGGAAGATATGAAGGTTGTTTCCGTAGGTGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

23.39

Weight (kDa)

6.44

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
Acc36I ACCTGC 1 cut(s) 464
AccB1I GGYRCC 2 cut(s) 24, 160
AciI CCGC 1 cut(s) 515
AcoI YGGCCR 1 cut(s) 14
AcsI RAATTY 1 cut(s) 551
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 170
AgsI TTSAA 7 cut(s) 205, 245, 346, 414, 560, 587, 598
AjnI CCWGG 1 cut(s) 191
AluBI AGCT 5 cut(s) 6, 310, 451, 456, 466
AluI AGCT 5 cut(s) 6, 310, 451, 456, 466
Alw21I GWGCWC 1 cut(s) 468
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 3 cut(s) 14, 300, 516
ApoI RAATTY 1 cut(s) 551
Asp700I GAANNNNTTC 1 cut(s) 240
AspS9I GGNCC 1 cut(s) 486
AsuC2I CCSGG 1 cut(s) 484
AsuHPI GGTGA 1 cut(s) 172
AsuII TTCGAA 2 cut(s) 138, 357
AvaII GGWCC 1 cut(s) 486
BalI TGGCCA 1 cut(s) 16
BanI GGYRCC 2 cut(s) 24, 160
BanII GRGCYC 1 cut(s) 468
BauI CACGAG 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 506
Bbv12I GWGCWC 1 cut(s) 468
BccI CCATC 1 cut(s) 568
BceAI ACGGC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 193
BcnI CCSGG 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 111
BfmI CTRYAG 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 464
BglI GCCNNNNNGGC 1 cut(s) 22
BisI GCNGC 1 cut(s) 516
BlpI GCTNAGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 517
Bme1390I CCNGG 2 cut(s) 193, 484
Bme18I GGWCC 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 486
BmiI GGNNCC 3 cut(s) 26, 162, 488
BmrFI CCNGG 2 cut(s) 193, 484
BmsI GCATC 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 457
Bpu1102I GCTNAGC 1 cut(s) 452
Bpu14I TTCGAA 2 cut(s) 138, 357
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 156, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 514
BseBI CCWGG 1 cut(s) 193
BseDI CCNNGG 2 cut(s) 156, 327
BseGI GGATG 3 cut(s) 152, 445, 579
BseLI CCNNNNNNNGG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 514
Bsh1285I CGRYCG 1 cut(s) 171
BshFI GGCC 3 cut(s) 16, 302, 518
BshNI GGYRCC 2 cut(s) 24, 160
BsiEI CGRYCG 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 468
BsiSI CCGG 1 cut(s) 484
BslFI GGGAC 2 cut(s) 472, 517
BslI CCNNNNNNNGG 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 2 cut(s) 472, 517
BsnI GGCC 3 cut(s) 16, 302, 518
Bsp119I TTCGAA 2 cut(s) 138, 357
Bsp1286I GDGCHC 1 cut(s) 468
Bsp143I GATC 2 cut(s) 348, 580
Bsp1720I GCTNAGC 1 cut(s) 452
BspACI CCGC 1 cut(s) 515
BspANI GGCC 3 cut(s) 16, 302, 518
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 3 cut(s) 26, 162, 488
BspMAI CTGCAG 1 cut(s) 475
BspMI ACCTGC 1 cut(s) 464
BspT104I TTCGAA 2 cut(s) 138, 357
BspT107I GGYRCC 2 cut(s) 24, 160
BsrDI GCAATG 1 cut(s) 514
BssECI CCNNGG 2 cut(s) 156, 327
BssMI GATC 2 cut(s) 348, 580
BssSI CACGAG 1 cut(s) 263
BssT1I CCWWGG 2 cut(s) 156, 327
Bst2BI CACGAG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 165
Bst6I CTCTTC 1 cut(s) 582
BstBI TTCGAA 2 cut(s) 138, 357
BstC8I GCNNGC 4 cut(s) 46, 85, 260, 312
BstDEI CTNAG 2 cut(s) 452, 457
BstF5I GGATG 3 cut(s) 152, 445, 579
BstKTI GATC 2 cut(s) 351, 583
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 2 cut(s) 348, 580
BstMCI CGRYCG 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 22, 259
BstNI CCWGG 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 48
BstSCI CCNGG 2 cut(s) 191, 482
BstSFI CTRYAG 1 cut(s) 471
BstV2I GAAGAC 1 cut(s) 506
BstXI CCANNNNNNTGG 1 cut(s) 392
BsuRI GGCC 3 cut(s) 16, 302, 518
BtsCI GGATG 3 cut(s) 152, 445, 579
BtsI GCAGTG 2 cut(s) 468, 575
BtsIMutI CAGTG 2 cut(s) 468, 575
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 4 cut(s) 46, 85, 260, 312
CciI TCATGA 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 486
Csp6I GTAC 1 cut(s) 186
CviAII CATG 3 cut(s) 45, 52, 130
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 2 cut(s) 452, 457
DpnI GATC 2 cut(s) 350, 582
DpnII GATC 2 cut(s) 348, 580
EaeI YGGCCR 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 2 cut(s) 156, 327
Eco24I GRGCYC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 486
Eco53kI GAGCTC 1 cut(s) 466
EcoICRI GAGCTC 1 cut(s) 466
EcoRII CCWGG 1 cut(s) 191
EcoT14I CCWWGG 2 cut(s) 156, 327
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 2 cut(s) 156, 327
FaeI CATG 3 cut(s) 48, 55, 133
FaiI YATR 7 cut(s) 46, 53, 71, 131, 336, 446, 608
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 2 cut(s) 472, 517
FatI CATG 3 cut(s) 44, 51, 129
Fnu4HI GCNGC 1 cut(s) 516
FokI GGATG 3 cut(s) 139, 452, 586
FriOI GRGCYC 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 516
GluI GCNGC 1 cut(s) 516
HaeIII GGCC 3 cut(s) 16, 302, 518
HapII CCGG 1 cut(s) 484
Hin1II CATG 3 cut(s) 48, 55, 133
HindIII AAGCTT 2 cut(s) 308, 449
HinfI GANTC 3 cut(s) 104, 231, 410
HpaII CCGG 1 cut(s) 484
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 420
Hpy188I TCNGA 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 130, 584
Hpy8I GTNNAC 1 cut(s) 420
Hpy99I CGWCG 1 cut(s) 169
HpyAV CCTTC 7 cut(s) 136, 292, 353, 423, 554, 592, 604
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 2 cut(s) 83, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 259
HpyF3I CTNAG 2 cut(s) 452, 457
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 3 cut(s) 48, 55, 133
Kzo9I GATC 2 cut(s) 348, 580
LpnPI CCDG 6 cut(s) 178, 205, 258, 268, 459, 497
LweI GCATC 1 cut(s) 20
MaeII ACGT 1 cut(s) 134
MalI GATC 2 cut(s) 350, 582
MboI GATC 2 cut(s) 348, 580
MboII GAAGA 6 cut(s) 152, 358, 408, 511, 599, 614
MhlI GDGCHC 1 cut(s) 468
MlsI TGGCCA 1 cut(s) 16
MluCI AATT 2 cut(s) 371, 551
MluNI TGGCCA 1 cut(s) 16
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 3 cut(s) 59, 529, 557
Mox20I TGGCCA 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 240
MscI TGGCCA 1 cut(s) 16
MseI TTAA 1 cut(s) 176
Msp20I TGGCCA 1 cut(s) 16
MspI CCGG 1 cut(s) 484
MspR9I CCNGG 2 cut(s) 193, 484
MvaI CCWGG 1 cut(s) 193
MwoI GCNNNNNNNGC 2 cut(s) 22, 259
NciI CCSGG 1 cut(s) 484
NdeII GATC 2 cut(s) 348, 580
NlaIII CATG 3 cut(s) 48, 55, 133
NlaIV GGNNCC 3 cut(s) 26, 162, 488
NspI RCATGY 1 cut(s) 48
NspV TTCGAA 2 cut(s) 138, 357
PaeI GCATGC 1 cut(s) 48
PagI TCATGA 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 240
PfeI GAWTC 2 cut(s) 231, 410
PkrI GCNGC 1 cut(s) 517
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PsiI TTATAA 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 191
PspGI CCWGG 1 cut(s) 191
PspN4I GGNNCC 3 cut(s) 26, 162, 488
PspPI GGNCC 1 cut(s) 486
PstI CTGCAG 1 cut(s) 475
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SacI GAGCTC 1 cut(s) 468
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 516
Sau3AI GATC 2 cut(s) 348, 580
Sau96I GGNCC 1 cut(s) 486
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 193, 484
SduI GDGCHC 1 cut(s) 468
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 1 cut(s) 471
SfuI TTCGAA 2 cut(s) 138, 357
SinI GGWCC 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SphI GCATGC 1 cut(s) 48
Sse9I AATT 2 cut(s) 371, 551
SsiI CCGC 1 cut(s) 515
SspI AATATT 1 cut(s) 201
SstI GAGCTC 1 cut(s) 468
StyD4I CCNGG 2 cut(s) 191, 482
StyI CCWWGG 2 cut(s) 156, 327
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 1 cut(s) 137
TaqI TCGA 5 cut(s) 138, 234, 285, 351, 357
TaqII GACCGA 1 cut(s) 157
TasI AATT 2 cut(s) 371, 551
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 2 cut(s) 231, 410
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 475, 575
TspDTI ATGAA 2 cut(s) 118, 623
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 2 cut(s) 475, 575
VpaK11BI GGWCC 1 cut(s) 486
XapI RAATTY 1 cut(s) 551
XceI RCATGY 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.