Rh2CG606600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017420
Physical Location & Seq
Forward (+)
78257724 .. 78264025
6302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG606600.1

Sequence Viewer

Length: 645 bp
ATGGTCCGGTTTATGAATAGTTCCAAATCAGATGTAGAGAAAAGAAAGAGGGAAATGCCAACAGATTTTCAGAATGTCTCTTATGCATTTGCTGATCAGGATGTTGATGCTAATTCTGTTGTACTCACTGCTGCTCTTGCTTCCAAATTGAGCCGTTGGCAACCCCCTGCTATAGGATCTCTGAAGATAAATTTTCACTCTGCATTTTCCAAAAGCAGTGGCGTAGGCATTGGCGGACTATGTTCTCTGGTGCGCAATGATTGGGGAGAGCTTTTGGACGGTTTGACTACCAGGGTGGTTGCTGGATTTCCTTTTGATGCAGAAGTGAAGGCCGCAAAGCTTGTGTGTTCTCTTGGTGTGGATTATAAGGGAGTGAAGATTGAGTTTGAGGGTGGAAGCAAGTTGCTGACTAACTTGGTTGTTGGAAAAACTCTTCTGGGTTCCAAGTGGACTGCAAGAAGCTTAATGGATGAGATAAAGCTTAGTTTGGGGGAGCTTAGGGCTGGCTATTCCTGGACCCATTGTGCGAAGACAGGCAATATGGCGGCATCCTATTTCTCGAGCAGGTTGTGTGAAAATGAATTCATTGAAGGAATGCAGTGGTTGGATGATCTCCAGGAGATTTTGGTGGAAGATATGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

214

Amino Acids

23.49

Weight (kDa)

5.78

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
Acc16I TGCGCA 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 555
AciI CCGC 3 cut(s) 234, 333, 545
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 2 cut(s) 190, 581
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 173
AgsI TTSAA 1 cut(s) 590
AjnI CCWGG 3 cut(s) 290, 512, 615
AluBI AGCT 5 cut(s) 271, 340, 462, 481, 496
AluI AGCT 5 cut(s) 271, 340, 462, 481, 496
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 559
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 190, 581
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 2 cut(s) 4, 516
AvaI CYCGRG 1 cut(s) 559
AvaII GGWCC 2 cut(s) 4, 516
BbsI GAAGAC 1 cut(s) 536
BbvI GCAGC 1 cut(s) 118
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 3 cut(s) 292, 514, 617
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 82
BfmI CTRYAG 2 cut(s) 171, 641
BfuAI ACCTGC 1 cut(s) 555
BisI GCNGC 3 cut(s) 132, 333, 546
BlsI GCNGC 3 cut(s) 133, 334, 547
Bme1390I CCNGG 3 cut(s) 292, 514, 617
Bme18I GGWCC 2 cut(s) 4, 516
BmeT110I CYCGRG 1 cut(s) 559
BmgT120I GGNCC 2 cut(s) 4, 516
BmiI GGNNCC 2 cut(s) 442, 518
BmrFI CCNGG 3 cut(s) 292, 514, 617
BmsI GCATC 3 cut(s) 97, 307, 557
BpiI GAAGAC 1 cut(s) 536
BpmI CTGGAG 1 cut(s) 599
Bpu10I CCTNAGC 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 291
BsaWI WCCGGW 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 262
BseBI CCWGG 3 cut(s) 292, 514, 617
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 4 cut(s) 106, 475, 548, 613
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 332
BsiHKCI CYCGRG 1 cut(s) 559
BsiSI CCGG 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 559
Bsp143I GATC 3 cut(s) 94, 176, 610
BspACI CCGC 3 cut(s) 234, 333, 545
BspANI GGCC 1 cut(s) 332
BspLI GGNNCC 2 cut(s) 442, 518
BspMI ACCTGC 1 cut(s) 555
BspPI GGATC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 3 cut(s) 94, 176, 610
Bst2UI CCWGG 3 cut(s) 292, 514, 617
Bst4CI ACNGT 1 cut(s) 281
Bst6I CTCTTC 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 2 cut(s) 482, 497
BstENI CCTNNNNNAGG 1 cut(s) 171
BstF5I GGATG 4 cut(s) 106, 475, 548, 613
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 3 cut(s) 97, 179, 613
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 3 cut(s) 94, 176, 610
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 3 cut(s) 292, 514, 617
BstSCI CCNGG 3 cut(s) 290, 512, 615
BstSFI CTRYAG 2 cut(s) 171, 641
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 1 cut(s) 332
BtsCI GGATG 4 cut(s) 106, 475, 548, 613
BtsI GCAGTG 3 cut(s) 126, 223, 605
BtsIMutI CAGTG 3 cut(s) 126, 223, 605
BveI ACCTGC 1 cut(s) 555
Cac8I GCNNGC 1 cut(s) 505
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 4, 516
Csp6I GTAC 1 cut(s) 122
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviJI RGCY 9 cut(s) 153, 271, 332, 340, 462, 481, 496, 503, 507
CviKI_1 RGCY 9 cut(s) 153, 271, 332, 340, 462, 481, 496, 503, 507
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 2 cut(s) 482, 497
DpnI GATC 3 cut(s) 96, 178, 612
DpnII GATC 3 cut(s) 94, 176, 610
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EciI GGCGGA 1 cut(s) 249
Eco47I GGWCC 2 cut(s) 4, 516
Eco57I CTGAAG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 559
EcoNI CCTNNNNNAGG 1 cut(s) 171
EcoRI GAATTC 1 cut(s) 581
EcoRII CCWGG 3 cut(s) 290, 512, 615
EcoT22I ATGCAT 1 cut(s) 88
FaiI YATR 7 cut(s) 14, 84, 173, 241, 366, 542, 638
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 132, 333, 546
FokI GGATG 4 cut(s) 113, 482, 535, 620
Fsp4HI GCNGC 3 cut(s) 132, 333, 546
FspI TGCGCA 1 cut(s) 254
GlaI GCGC 1 cut(s) 254
GluI GCNGC 3 cut(s) 132, 333, 546
GsuI CTGGAG 1 cut(s) 599
HaeIII GGCC 1 cut(s) 332
HapII CCGG 1 cut(s) 7
HhaI GCGC 1 cut(s) 255
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HindIII AAGCTT 3 cut(s) 338, 460, 479
HpaII CCGG 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 450
Hpy188I TCNGA 3 cut(s) 31, 72, 183
Hpy188III TCNNGA 2 cut(s) 98, 559
Hpy8I GTNNAC 1 cut(s) 450
HpyAV CCTTC 2 cut(s) 322, 584
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 5 cut(s) 86, 203, 320, 455, 598
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 482, 497
HspAI GCGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 94, 176, 610
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 3 cut(s) 97, 307, 557
MalI GATC 3 cut(s) 96, 178, 612
MboI GATC 3 cut(s) 94, 176, 610
MboII GAAGA 5 cut(s) 196, 388, 425, 541, 644
MflI RGATCY 1 cut(s) 176
MluCI AATT 4 cut(s) 112, 146, 190, 581
MmeI TCCRAC 2 cut(s) 403, 585
MnlI CCTC 2 cut(s) 42, 382
Mph1103I ATGCAT 1 cut(s) 88
MseI TTAA 1 cut(s) 464
MspI CCGG 1 cut(s) 7
MspR9I CCNGG 3 cut(s) 292, 514, 617
Mva1269I GAATGC 1 cut(s) 600
MvaI CCWGG 3 cut(s) 292, 514, 617
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 3 cut(s) 94, 176, 610
NlaIV GGNNCC 2 cut(s) 442, 518
NsbI TGCGCA 1 cut(s) 254
NsiI ATGCAT 1 cut(s) 88
PaeR7I CTCGAG 1 cut(s) 559
PctI GAATGC 1 cut(s) 600
PfoI TCCNGGA 2 cut(s) 512, 615
PkrI GCNGC 3 cut(s) 133, 334, 547
PsiI TTATAA 1 cut(s) 366
Psp6I CCWGG 3 cut(s) 290, 512, 615
PspGI CCWGG 3 cut(s) 290, 512, 615
PspN4I GGNNCC 2 cut(s) 442, 518
PspPI GGNCC 2 cut(s) 4, 516
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 3 cut(s) 132, 333, 546
Sau3AI GATC 3 cut(s) 94, 176, 610
Sau96I GGNCC 2 cut(s) 4, 516
ScrFI CCNGG 3 cut(s) 292, 514, 617
SetI ASST 6 cut(s) 273, 342, 464, 483, 498, 569
SfaNI GCATC 3 cut(s) 97, 307, 557
SfcI CTRYAG 2 cut(s) 171, 641
Sfr274I CTCGAG 1 cut(s) 559
SinI GGWCC 2 cut(s) 4, 516
SlaI CTCGAG 1 cut(s) 559
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 4 cut(s) 112, 146, 190, 581
SsiI CCGC 3 cut(s) 234, 333, 545
StyD4I CCNGG 3 cut(s) 290, 512, 615
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 560
TasI AATT 4 cut(s) 112, 146, 190, 581
TatI WGTACW 1 cut(s) 121
TauI GCSGC 2 cut(s) 335, 548
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TscAI CASTG 3 cut(s) 133, 223, 605
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 29, 574, 594
TspRI CASTG 3 cut(s) 133, 223, 605
VpaK11BI GGWCC 2 cut(s) 4, 516
XagI CCTNNNNNAGG 1 cut(s) 171
XapI RAATTY 2 cut(s) 190, 581
XhoI CTCGAG 1 cut(s) 559
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.