Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017420

Physical Location & Seq

Genomic Coordinates Forward (+)

23393014 .. 23409114

Gene Structure 16101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG235200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGACGTTACATCATATGATGCTTGAAGATTTGCCGAATGGTATTATGGATGAGTATTTCCCGCTTGCTCCATCCAGTCCCGACAACGAAGTCAACCATAGCAATCCGCGAAGTCGACATCTGCTAAGATTGTTCACTGTTGAAGAATTGGCTTTGTACAATGGGACTGATCAAAGTTTGCCAATCTTGTTAGGAATTCTCGGAGATGCTTCACGAGCATTTGTTTCTGGAAACTTTACAGGAGATGGGCTCACAGACTCGTTAAGTGGTTTATCCAACCAACAGGTGAAGAGTATTGTTGAATGGAGGGATTTCTACTTTAGAACTTACACAGGTGCACAGCTATTGAAGAAACCGGAGATTGAAGAAGCTAAGCAACCTGGTTGCAATTCAAGGTGGAGTCAGGATGAGGGCGGAGAGAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010720 GO:0012505 GO:0016020 GO:0020037 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065007 GO:0097159 GO:1901363 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

142

Amino Acids

15.96

Weight (kDa)

5.0

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017420)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0171201
rosa_roxburghii	Rroxscaffold_2G00107670 Rroxscaffold_5G00352740
rosa_rugosa	Rorug01G0074700
rosa_samantha	Rh2AG628000 Rh2BG158700 Rh2BG638300 Rh2CG606600 Rh2DG158400 Rh2DG235200 Rh2DG654700 Rh5DG403100
rosa_wichuraiana	Rw2G051960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccI	GTMKAC	1 cut(s)	115
AccII	CGCG	1 cut(s)	109
AciI	CCGC	3 cut(s)	62, 107, 414
AcsI	RAATTY	1 cut(s)	195
AfaI	GTAC	1 cut(s)	158
AgsI	TTSAA	6 cut(s)	26, 143, 302, 349, 365, 393
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	2 cut(s)	343, 371
AluI	AGCT	2 cut(s)	343, 371
Alw21I	GWGCWC	1 cut(s)	340
Alw44I	GTGCAC	1 cut(s)	336
ApaLI	GTGCAC	1 cut(s)	336
ApoI	RAATTY	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	340
BanII	GRGCYC	1 cut(s)	252
BauI	CACGAG	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	340
BccI	CCATC	2 cut(s)	79, 239
BciT130I	CCWGG	1 cut(s)	381
BclI	TGATCA	1 cut(s)	169
BlpI	GCTNAGC	1 cut(s)	372
Bme1390I	CCNGG	1 cut(s)	381
BmrFI	CCNGG	1 cut(s)	381
BmsI	GCATC	2 cut(s)	9, 196
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
Bpu1102I	GCTNAGC	1 cut(s)	372
BsaWI	WCCGGW	1 cut(s)	355
Bse1I	ACTGG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	381
BseGI	GGATG	3 cut(s)	55, 71, 412
BseNI	ACTGG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	340
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	2 cut(s)	63, 178
BsmFI	GGGAC	2 cut(s)	63, 178
Bsp1286I	GDGCHC	2 cut(s)	252, 340
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	1 cut(s)	169
Bsp1720I	GCTNAGC	1 cut(s)	372
BspACI	CCGC	3 cut(s)	62, 107, 414
BspFNI	CGCG	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	169
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	66
BstDEI	CTNAG	2 cut(s)	125, 372
BstF5I	GGATG	3 cut(s)	55, 71, 412
BstFNI	CGCG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	215
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	379
BstSLI	GKGCMC	1 cut(s)	340
BstUI	CGCG	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	55, 71, 412
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	66
CsiI	ACCWGGT	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	157
CviJI	RGCY	4 cut(s)	152, 250, 343, 371
CviKI_1	RGCY	4 cut(s)	152, 250, 343, 371
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	125, 372
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
EciI	GGCGGA	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	252
FaiI	YATR	4 cut(s)	15, 17, 47, 99
FaqI	GGGAC	2 cut(s)	63, 178
FauI	CCCGC	1 cut(s)	69
FauNDI	CATATG	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	115
FokI	GGATG	3 cut(s)	58, 62, 419
FriOI	GRGCYC	1 cut(s)	252
HapII	CCGG	1 cut(s)	356
HincII	GTYRAC	2 cut(s)	94, 116
HindII	GTYRAC	2 cut(s)	94, 116
HinfI	GANTC	2 cut(s)	257, 400
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	4 cut(s)	94, 116, 135, 338
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	4 cut(s)	80, 213, 228, 404
Hpy8I	GTNNAC	4 cut(s)	94, 116, 135, 338
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	338, 387
HpyF10VI	GCNNNNNNNGC	1 cut(s)	215
HpyF3I	CTNAG	2 cut(s)	125, 372
HpySE526I	ACGT	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	169
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	9 cut(s)	88, 213, 225, 269, 318, 366, 369, 389, 393
LweI	GCATC	2 cut(s)	9, 196
MabI	ACCWGGT	1 cut(s)	379
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	5 cut(s)	38, 155, 301, 361, 377
MhlI	GDGCHC	2 cut(s)	252, 340
MluCI	AATT	3 cut(s)	146, 195, 388
MlyI	GAGTC	2 cut(s)	251, 409
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	2 cut(s)	300, 403
MseI	TTAA	1 cut(s)	263
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	215
NdeI	CATATG	1 cut(s)	15
NdeII	GATC	1 cut(s)	169
PleI	GAGTC	2 cut(s)	251, 408
PpsI	GAGTC	2 cut(s)	251, 408
Psp6I	CCWGG	1 cut(s)	379
PspGI	CCWGG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SalI	GTCGAC	1 cut(s)	114
SaqAI	TTAA	1 cut(s)	263
Sau3AI	GATC	1 cut(s)	169
SchI	GAGTC	2 cut(s)	251, 409
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	252, 340
SetI	ASST	7 cut(s)	8, 288, 337, 345, 373, 382, 398
SexAI	ACCWGGT	1 cut(s)	379
SfaNI	GCATC	2 cut(s)	9, 196
Sse9I	AATT	3 cut(s)	146, 195, 388
SsiI	CCGC	3 cut(s)	62, 107, 414
StyD4I	CCNGG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	115
TasI	AATT	3 cut(s)	146, 195, 388
TatI	WGTACW	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	142
TspRI	CASTG	1 cut(s)	142
VneI	GTGCAC	1 cut(s)	336
XapI	RAATTY	1 cut(s)	195
XmiI	GTMKAC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.