Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0017420

Physical Location & Seq

Genomic Coordinates Forward (+)

13646624 .. 13655809

Gene Structure 9186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG158700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGTTACATTTTAAGCCCAAGTCTTCACCGGAGATCTGTCCGTCTCTCGCTTTGTGGCCTGCATCTTGTCGATCTCCATTGTCAAAACAGAGATTGTTCACTGTTGAAGAATTGGCTTTGTACAATGGGACTGATCAAAGTTTGCCAATCTTGTTTGGAATTCTCGGGTACCCTTCTGCTTTCGCTATGTTCAGATGTGTATATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010720 GO:0012505 GO:0016020 GO:0020037 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065007 GO:0097159 GO:1901363 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

69

Amino Acids

7.75

Weight (kDa)

7.72

Isoelectric Point (pI)

71.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0017420)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0171201
rosa_roxburghii	Rroxscaffold_2G00107670 Rroxscaffold_5G00352740
rosa_rugosa	Rorug01G0074700
rosa_samantha	Rh2AG628000 Rh2BG158700 Rh2BG638300 Rh2CG606600 Rh2DG158400 Rh2DG235200 Rh2DG654700 Rh5DG403100
rosa_wichuraiana	Rw2G051960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	159
AfaI	GTAC	2 cut(s)	122, 170
AgsI	TTSAA	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	48
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	159
Asp718I	GGTACC	1 cut(s)	168
AsuHPI	GGTGA	1 cut(s)	18
AvaI	CYCGRG	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	48
BglII	AGATCT	1 cut(s)	33
BmeT110I	CYCGRG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	170
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	28
BshFI	GGCC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	164
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	33, 71, 133
BspANI	GGCC	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	170
BspT107I	GGYRCC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	120
BssMI	GATC	3 cut(s)	33, 71, 133
Bst4CI	ACNGT	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	36, 74, 136
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	33, 71, 133
BstV2I	GAAGAC	1 cut(s)	15
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	121, 169
CviJI	RGCY	3 cut(s)	16, 58, 116
CviKI_1	RGCY	3 cut(s)	16, 58, 116
CviQI	GTAC	2 cut(s)	121, 169
DpnI	GATC	3 cut(s)	35, 73, 135
DpnII	GATC	3 cut(s)	33, 71, 133
Eco88I	CYCGRG	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	48
FaiI	YATR	3 cut(s)	188, 202, 204
FaqI	GGGAC	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	29
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	62
KpnI	GGTACC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	3 cut(s)	33, 71, 133
LpnPI	CCDG	2 cut(s)	42, 72
LweI	GCATC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	3 cut(s)	35, 73, 135
MboI	GATC	3 cut(s)	33, 71, 133
MboII	GAAGA	2 cut(s)	15, 119
MflI	RGATCY	1 cut(s)	33
MluCI	AATT	2 cut(s)	110, 159
MseI	TTAA	1 cut(s)	12
MspI	CCGG	1 cut(s)	29
NdeII	GATC	3 cut(s)	33, 71, 133
NlaIV	GGNNCC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	2 cut(s)	122, 170
RsaNI	GTAC	2 cut(s)	121, 169
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	33, 71, 133
SfaNI	GCATC	1 cut(s)	71
SgeI	CNNG	8 cut(s)	31, 41, 59, 71, 78, 163, 176, 178
Sse9I	AATT	2 cut(s)	110, 159
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	1 cut(s)	70
TasI	AATT	2 cut(s)	110, 159
TatI	WGTACW	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	106
XapI	RAATTY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.