Rh2DG654700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0017420
Physical Location & Seq
Forward (+)
87983224 .. 87985100
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG654700.1

Sequence Viewer

Length: 591 bp
ATGAGTGCCGATTTTCAGAATGTCTCTTATGCATTTGCTGATCAGGATGTTGATGCTAATTCTGTTGTACTCACTGCTGCTCTTGCTTCCAAATTGAGCCGTTGGCAACCCCCTGCTATAGGATCTCTGAAGATAAATTTTCACTCTGCATTTTCCAAAAGCAGTGGCGTAGGCATTGGCGGACTATGTTCTCTGGTGCGCAATGATTGGGGAGAGCTTTTGGACGGTTTGACTACCAGGGTGGTTGCTGGATTTCCTTTTGATGCAGAAGTGAAGGCCGCAAAGCTTGTGTGTTCTCTTGGTGTGGATTATAAGGGAGTGAAGATTGAGTTTGAGGGTGGAAGCAAGTTGCTGACTAACTTGGTTGTTGGAAAAACTCTTCTGGGTTCCAAGTGGACTGCAAGAAGCTTAATGGATGAGATAAAGCTTAGTTTGGGGGAGCTTAGGGCTGGCTATTCCTGGACCCATTGTGCGAAGACAGGCAATATGGCGGCATCCTATTTCTCGAGCAGGTTGTGTGAAAATGAATTCATTGAAGGAATGCAGTGGTTGGATGATCTCCAGGAGATTTTGGTGGAAGATATGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

196

Amino Acids

21.24

Weight (kDa)

5.07

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
Acc16I TGCGCA 1 cut(s) 200
Acc36I ACCTGC 1 cut(s) 501
AciI CCGC 3 cut(s) 180, 279, 491
AclWI GGATC 1 cut(s) 130
AcsI RAATTY 2 cut(s) 136, 527
AcuI CTGAAG 1 cut(s) 149
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 536
AjnI CCWGG 3 cut(s) 236, 458, 561
AluBI AGCT 5 cut(s) 217, 286, 408, 427, 442
AluI AGCT 5 cut(s) 217, 286, 408, 427, 442
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 1 cut(s) 130
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 2 cut(s) 136, 527
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 462
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 1 cut(s) 462
BbsI GAAGAC 1 cut(s) 482
BbvI GCAGC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 3 cut(s) 238, 460, 563
BclI TGATCA 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 28
BfmI CTRYAG 2 cut(s) 117, 587
BfuAI ACCTGC 1 cut(s) 501
BisI GCNGC 3 cut(s) 78, 279, 492
BlsI GCNGC 3 cut(s) 79, 280, 493
Bme1390I CCNGG 3 cut(s) 238, 460, 563
Bme18I GGWCC 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 2 cut(s) 388, 464
BmrFI CCNGG 3 cut(s) 238, 460, 563
BmsI GCATC 3 cut(s) 43, 253, 503
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 1 cut(s) 545
Bpu10I CCTNAGC 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 3 cut(s) 238, 460, 563
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 4 cut(s) 52, 421, 494, 559
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 208
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 28
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 1 cut(s) 278
BsoBI CYCGRG 1 cut(s) 505
Bsp143I GATC 3 cut(s) 40, 122, 556
BspACI CCGC 3 cut(s) 180, 279, 491
BspANI GGCC 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 388, 464
BspMI ACCTGC 1 cut(s) 501
BspPI GGATC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 3 cut(s) 40, 122, 556
Bst2UI CCWGG 3 cut(s) 238, 460, 563
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 428, 443
BstENI CCTNNNNNAGG 1 cut(s) 117
BstF5I GGATG 4 cut(s) 52, 421, 494, 559
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 3 cut(s) 43, 125, 559
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 3 cut(s) 40, 122, 556
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 3 cut(s) 238, 460, 563
BstSCI CCNGG 3 cut(s) 236, 458, 561
BstSFI CTRYAG 2 cut(s) 117, 587
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BsuRI GGCC 1 cut(s) 278
BtsCI GGATG 4 cut(s) 52, 421, 494, 559
BtsI GCAGTG 3 cut(s) 72, 169, 551
BtsIMutI CAGTG 3 cut(s) 72, 169, 551
BveI ACCTGC 1 cut(s) 501
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 462
Csp6I GTAC 1 cut(s) 68
CspCI CAANNNNNGTGG 2 cut(s) 145, 180
CviJI RGCY 9 cut(s) 99, 217, 278, 286, 408, 427, 442, 449, 453
CviKI_1 RGCY 9 cut(s) 99, 217, 278, 286, 408, 427, 442, 449, 453
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 2 cut(s) 428, 443
DpnI GATC 3 cut(s) 42, 124, 558
DpnII GATC 3 cut(s) 40, 122, 556
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
EciI GGCGGA 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 462
Eco57I CTGAAG 1 cut(s) 149
Eco88I CYCGRG 1 cut(s) 505
EcoNI CCTNNNNNAGG 1 cut(s) 117
EcoRI GAATTC 1 cut(s) 527
EcoRII CCWGG 3 cut(s) 236, 458, 561
EcoT22I ATGCAT 1 cut(s) 34
FaiI YATR 6 cut(s) 30, 119, 187, 312, 488, 584
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 3 cut(s) 78, 279, 492
FokI GGATG 4 cut(s) 59, 428, 481, 566
Fsp4HI GCNGC 3 cut(s) 78, 279, 492
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 1 cut(s) 200
GluI GCNGC 3 cut(s) 78, 279, 492
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 1 cut(s) 278
HhaI GCGC 1 cut(s) 201
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HindIII AAGCTT 3 cut(s) 284, 406, 425
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 2 cut(s) 18, 129
Hpy188III TCNNGA 2 cut(s) 44, 505
Hpy8I GTNNAC 1 cut(s) 396
HpyAV CCTTC 2 cut(s) 268, 530
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4V TGCA 5 cut(s) 32, 149, 266, 401, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 428, 443
HspAI GCGC 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 3 cut(s) 40, 122, 556
LmnI GCTCC 1 cut(s) 439
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 3 cut(s) 43, 253, 503
MalI GATC 3 cut(s) 42, 124, 558
MboI GATC 3 cut(s) 40, 122, 556
MboII GAAGA 5 cut(s) 142, 334, 371, 487, 590
MflI RGATCY 1 cut(s) 122
MluCI AATT 4 cut(s) 58, 92, 136, 527
MmeI TCCRAC 2 cut(s) 349, 531
MnlI CCTC 1 cut(s) 328
Mph1103I ATGCAT 1 cut(s) 34
MseI TTAA 1 cut(s) 410
MspR9I CCNGG 3 cut(s) 238, 460, 563
Mva1269I GAATGC 1 cut(s) 546
MvaI CCWGG 3 cut(s) 238, 460, 563
MwoI GCNNNNNNNGC 1 cut(s) 83
NdeII GATC 3 cut(s) 40, 122, 556
NlaIV GGNNCC 2 cut(s) 388, 464
NsbI TGCGCA 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 34
PaeR7I CTCGAG 1 cut(s) 505
PctI GAATGC 1 cut(s) 546
PfoI TCCNGGA 2 cut(s) 458, 561
PkrI GCNGC 3 cut(s) 79, 280, 493
PsiI TTATAA 1 cut(s) 312
Psp6I CCWGG 3 cut(s) 236, 458, 561
PspGI CCWGG 3 cut(s) 236, 458, 561
PspN4I GGNNCC 2 cut(s) 388, 464
PspPI GGNCC 1 cut(s) 462
PsuI RGATCY 1 cut(s) 122
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 3 cut(s) 78, 279, 492
Sau3AI GATC 3 cut(s) 40, 122, 556
Sau96I GGNCC 1 cut(s) 462
ScrFI CCNGG 3 cut(s) 238, 460, 563
SetI ASST 6 cut(s) 219, 288, 410, 429, 444, 515
SfaNI GCATC 3 cut(s) 43, 253, 503
SfcI CTRYAG 2 cut(s) 117, 587
Sfr274I CTCGAG 1 cut(s) 505
SinI GGWCC 1 cut(s) 462
SlaI CTCGAG 1 cut(s) 505
SmlI CTYRAG 1 cut(s) 505
SmoI CTYRAG 1 cut(s) 505
Sse9I AATT 4 cut(s) 58, 92, 136, 527
SsiI CCGC 3 cut(s) 180, 279, 491
StyD4I CCNGG 3 cut(s) 236, 458, 561
TaaI ACNGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 506
TasI AATT 4 cut(s) 58, 92, 136, 527
TatI WGTACW 1 cut(s) 67
TauI GCSGC 2 cut(s) 281, 494
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 3 cut(s) 79, 169, 551
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 520, 540
TspRI CASTG 3 cut(s) 79, 169, 551
VpaK11BI GGWCC 1 cut(s) 462
XagI CCTNNNNNAGG 1 cut(s) 117
XapI RAATTY 2 cut(s) 136, 527
XhoI CTCGAG 1 cut(s) 505
Zsp2I ATGCAT 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.