Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0017420

Physical Location & Seq

Genomic Coordinates Forward (+)

63860026 .. 63868632

Gene Structure 8607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG403100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 779 bp

ATGGGGGTGGTTGCATCAGATGGAGGTGATGGCATGGGTCTAAGCGTGGAGGGTGAGGCGTCGTTTGTTTGGTGCGTTGATGGCCTGAGGACTGTGGCTGTTCAATTGCTTCATGGTCATGGTGGTGATGTCGATGGCCAGTGGGTGATGGCTCTCAATCTTGATAGTGGCCTGTTGGGCTATGTCTCGCATGGAGTTCCAAGTTGTCGCCGTTGGTTTGGGGTGGTTGCAGCAGTTCCATTTAATGCAGAATTGAAAGTTGCGAAGCTTGCTAGTTCACTAGCATTGGATTATAAGAATGTGAAGATTGAGATTGAAGGTGGAAGTGAGTTATTGACAAACCAAGTAGTTGGAAGAACTGTGCTGGATTCAAAGTGGACCGCGACAATGTTTGAGGATGATATCAAGCTTAACTTAGAAGAGCTCTGTGCCGGTTATTCATGGTCGCATTGTATGAAGACGAGTAATGCTGCAGCCTCATATTTCTCAGCCCGGTTGTGTGAAAAAATCAATCAGATCTGTCTATCTCTCGCTTTGTGGCCTGCATCTTGTCGATCTCCATTGTCAAAACAGAGATTGTTCACTGTTGAAGAATTGGCTTTGTACAATGGGACTGATCAAAGTTTGCCAATCTTGTTAGGAATTCTCGGAGATGCTTCACGAGCATTTGTTTCAGGAAACTTTACAGGAGATGGGCTCACAGACTTGTTAAGTGGTTTATCCCGCCAACAGGTGAAGAGTATTGTTGAATGGAGGGATTTCTACTTTAGAACTTACAC

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010720 GO:0012505 GO:0016020 GO:0020037 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065007 GO:0097159 GO:1901363 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

259

Amino Acids

28.1

Weight (kDa)

5.12

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017420)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0171201
rosa_roxburghii	Rroxscaffold_2G00107670 Rroxscaffold_5G00352740
rosa_rugosa	Rorug01G0074700
rosa_samantha	Rh2AG628000 Rh2BG158700 Rh2BG638300 Rh2CG606600 Rh2DG158400 Rh2DG235200 Rh2DG654700 Rh5DG403100
rosa_wichuraiana	Rw2G051960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AccII	CGCG	1 cut(s)	383
AciI	CCGC	2 cut(s)	381, 724
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	642
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	605
AfiI	CCNNNNNNNGG	1 cut(s)	730
AgsI	TTSAA	6 cut(s)	104, 256, 317, 372, 590, 749
AluBI	AGCT	3 cut(s)	268, 409, 424
AluI	AGCT	3 cut(s)	268, 409, 424
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	190
AoxI	GGCC	4 cut(s)	82, 136, 169, 539
ApeKI	GCWGC	3 cut(s)	230, 470, 473
ApoI	RAATTY	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	493
AsuHPI	GGTGA	5 cut(s)	38, 65, 137, 157, 745
AvaII	GGWCC	1 cut(s)	378
AxyI	CCTNAGG	1 cut(s)	86
BalI	TGGCCA	1 cut(s)	138
BanII	GRGCYC	2 cut(s)	426, 699
BauI	CACGAG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	464
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	3 cut(s)	242, 457, 485
BccI	CCATC	6 cut(s)	14, 23, 74, 128, 142, 686
BceAI	ACGGC	1 cut(s)	195
BclI	TGATCA	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	2 cut(s)	273, 281
BfmI	CTRYAG	1 cut(s)	471
BglI	GCCNNNNNGGC	1 cut(s)	177
BglII	AGATCT	1 cut(s)	516
BisI	GCNGC	3 cut(s)	231, 471, 474
BlsI	GCNGC	3 cut(s)	232, 472, 475
Bme1390I	CCNGG	1 cut(s)	493
Bme18I	GGWCC	1 cut(s)	378
BmgT120I	GGNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	493
BmsI	GCATC	3 cut(s)	23, 554, 643
BpiI	GAAGAC	1 cut(s)	464
BplI	GAGNNNNNCTC	2 cut(s)	681, 713
BpuMI	CCSGG	1 cut(s)	493
BsaHI	GRCGYC	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	139
Bse21I	CCTNAGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMII	CTCAG	2 cut(s)	77, 501
BseNI	ACTGG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	242, 457, 485
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	4 cut(s)	84, 138, 171, 541
BsiHKAI	GWGCWC	1 cut(s)	426
BsiSI	CCGG	2 cut(s)	432, 493
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	625
BsnI	GGCC	4 cut(s)	84, 138, 171, 541
Bsp1286I	GDGCHC	2 cut(s)	426, 699
Bsp1407I	TGTACA	1 cut(s)	603
Bsp143I	GATC	3 cut(s)	516, 554, 616
BspACI	CCGC	2 cut(s)	381, 724
BspANI	GGCC	4 cut(s)	84, 138, 171, 541
BspCNI	CTCAG	2 cut(s)	78, 500
BspFNI	CGCG	1 cut(s)	383
BspMAI	CTGCAG	1 cut(s)	475
BspQI	GCTCTTC	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	431
BsrGI	TGTACA	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	139
BssAI	RCCGGY	1 cut(s)	431
BssMI	GATC	3 cut(s)	516, 554, 616
BssNI	GRCGYC	1 cut(s)	59
BssSI	CACGAG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	660
Bst4CI	ACNGT	3 cut(s)	94, 361, 586
Bst6I	CTCTTC	2 cut(s)	414, 731
BstACI	GRCGYC	1 cut(s)	59
BstAUI	TGTACA	1 cut(s)	603
BstC8I	GCNNGC	2 cut(s)	270, 543
BstDEI	CTNAG	4 cut(s)	41, 86, 415, 487
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	383
BstKTI	GATC	3 cut(s)	519, 557, 619
BstMAI	GTCTC	1 cut(s)	190
BstMBI	GATC	3 cut(s)	516, 554, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 177, 269, 662
BstSCI	CCNGG	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	471
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	3 cut(s)	242, 457, 485
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	516
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	516
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	4 cut(s)	84, 138, 171, 541
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	146, 582
Cac8I	GCNNGC	2 cut(s)	270, 543
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	1 cut(s)	378
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	604
CviAII	CATG	5 cut(s)	34, 113, 119, 191, 441
CviQI	GTAC	1 cut(s)	604
DdeI	CTNAG	4 cut(s)	41, 86, 415, 487
DpnI	GATC	3 cut(s)	518, 556, 618
DpnII	GATC	3 cut(s)	516, 554, 616
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	414, 731
EarI	CTCTTC	2 cut(s)	414, 731
Ecl136II	GAGCTC	1 cut(s)	424
Eco24I	GRGCYC	2 cut(s)	426, 699
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	424
Eco81I	CCTNAGG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	642
EcoRV	GATATC	1 cut(s)	403
EcoT38I	GRGCYC	2 cut(s)	426, 699
FaeI	CATG	5 cut(s)	37, 116, 122, 194, 444
FaiI	YATR	9 cut(s)	35, 114, 120, 183, 192, 294, 442, 455, 481
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	5 cut(s)	33, 112, 118, 190, 440
FauI	CCCGC	1 cut(s)	731
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	3 cut(s)	231, 471, 474
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	2 cut(s)	426, 699
Fsp4HI	GCNGC	3 cut(s)	231, 471, 474
FspBI	CTAG	2 cut(s)	273, 281
GluI	GCNGC	3 cut(s)	231, 471, 474
HaeIII	GGCC	4 cut(s)	84, 138, 171, 541
HapII	CCGG	2 cut(s)	432, 493
HgaI	GACGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	5 cut(s)	37, 116, 122, 194, 444
HindIII	AAGCTT	2 cut(s)	266, 407
HinfI	GANTC	1 cut(s)	368
HpaII	CCGG	2 cut(s)	432, 493
HphI	GGTGA	5 cut(s)	38, 65, 137, 157, 745
Hpy166II	GTNNAC	3 cut(s)	278, 378, 582
Hpy188I	TCNGA	3 cut(s)	19, 516, 650
Hpy188III	TCNNGA	3 cut(s)	161, 660, 675
Hpy8I	GTNNAC	3 cut(s)	278, 378, 582
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	311
HpyCH4III	ACNGT	3 cut(s)	94, 361, 586
HpyCH4V	TGCA	5 cut(s)	14, 230, 248, 473, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 177, 269, 662
HpyF3I	CTNAG	4 cut(s)	41, 86, 415, 487
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	5 cut(s)	37, 116, 122, 194, 444
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	3 cut(s)	516, 554, 616
LguI	GCTCTTC	1 cut(s)	414
Lsp1109I	GCAGC	3 cut(s)	242, 457, 485
LweI	GCATC	3 cut(s)	23, 554, 643
MaeI	CTAG	2 cut(s)	273, 281
MalI	GATC	3 cut(s)	518, 556, 618
MboI	GATC	3 cut(s)	516, 554, 616
MboII	GAAGA	6 cut(s)	316, 366, 431, 469, 602, 748
MfeI	CAATTG	1 cut(s)	104
MflI	RGATCY	1 cut(s)	516
MhlI	GDGCHC	2 cut(s)	426, 699
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	4 cut(s)	104, 251, 593, 642
MluNI	TGGCCA	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	7 cut(s)	17, 43, 49, 81, 388, 487, 747
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	3 cut(s)	243, 411, 710
MslI	CAYNNNNRTG	2 cut(s)	117, 123
Msp20I	TGGCCA	1 cut(s)	138
MspI	CCGG	2 cut(s)	432, 493
MspR9I	CCNGG	1 cut(s)	493
MunI	CAATTG	1 cut(s)	104
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	4 cut(s)	81, 177, 269, 662
NciI	CCSGG	1 cut(s)	493
NdeII	GATC	3 cut(s)	516, 554, 616
NlaIII	CATG	5 cut(s)	37, 116, 122, 194, 444
PciSI	GCTCTTC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	3 cut(s)	232, 472, 475
PsiI	TTATAA	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	516
RsaI	GTAC	1 cut(s)	605
RsaNI	GTAC	1 cut(s)	604
RseI	CAYNNNNRTG	2 cut(s)	117, 123
SacI	GAGCTC	1 cut(s)	426
SapI	GCTCTTC	1 cut(s)	414
SaqAI	TTAA	3 cut(s)	243, 411, 710
SatI	GCNGC	3 cut(s)	231, 471, 474
Sau3AI	GATC	3 cut(s)	516, 554, 616
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	493
SduI	GDGCHC	2 cut(s)	426, 699
SetI	ASST	6 cut(s)	28, 270, 322, 411, 426, 735
SfaNI	GCATC	3 cut(s)	23, 554, 643
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	378
SmiMI	CAYNNNNRTG	2 cut(s)	117, 123
Sse9I	AATT	4 cut(s)	104, 251, 593, 642
SsiI	CCGC	2 cut(s)	381, 724
SspMI	CTAG	2 cut(s)	273, 281
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	491
TaaI	ACNGT	3 cut(s)	94, 361, 586
TaqI	TCGA	2 cut(s)	132, 553
TasI	AATT	4 cut(s)	104, 251, 593, 642
TatI	WGTACW	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	368
Tru1I	TTAA	3 cut(s)	243, 411, 710
Tru9I	TTAA	3 cut(s)	243, 411, 710
TscAI	CASTG	2 cut(s)	146, 589
TseI	GCWGC	3 cut(s)	230, 470, 473
TspDTI	ATGAA	3 cut(s)	101, 429, 470
TspRI	CASTG	2 cut(s)	146, 589
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	1 cut(s)	642
XspI	CTAG	2 cut(s)	273, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.