Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0017420

Physical Location & Seq

Genomic Coordinates Forward (+)

13359787 .. 13374997

Gene Structure 15211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG158400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTTATATGCATCTTATGTAAAAGCAGAGGCTCCCAACTGGGCATCTACTATTATACCTGCTACACCAAAGTATGTAGGTAGGCATCACAGGCATCATCTGATCTGTCCGTCTCTCGCTTTGTGGCCTGCATCTTGTCGATCTCCATTGTCAAAACAGAGATTGTTCACTGTTGAAGAATTGGCTTTGTACAATGGGACTGATCAAAGTTTGCCAATCTTGTTTGGAATTCTCGGAGATGCTTCACGAGCATTTGTTTCTGGAAACTTTACAGGAGATGGGCTCACGGACTCGTTAAGTGGTTTATCTAGCCAACAGGGAGTTGAAGCAAAGGCTGCCAGAGGTGCACAGCTATTGAAGAAACCGGAGATTGAAGAAGCTAAGCAACCTAGTTGCAATTCAAGGTGGATTCAGGCTGAGGGCGAAGAGTTATCTAGTATGGTAGGACATTATAATTATGAAAGACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0007275 GO:0007399 GO:0008150 GO:0009987 GO:0010720 GO:0012505 GO:0016020 GO:0020037 GO:0022008 GO:0030154 GO:0032501 GO:0032502 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0046906 GO:0048037 GO:0048518 GO:0048522 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0051960 GO:0051962 GO:0060284 GO:0065007 GO:0097159 GO:1901363 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyt-b5

Protein Analysis

156

Amino Acids

17.1

Weight (kDa)

6.96

Isoelectric Point (pI)

59.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017420)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0171201
rosa_roxburghii	Rroxscaffold_2G00107670 Rroxscaffold_5G00352740
rosa_rugosa	Rorug01G0074700
rosa_samantha	Rh2AG628000 Rh2BG158700 Rh2BG638300 Rh2CG606600 Rh2DG158400 Rh2DG235200 Rh2DG654700 Rh5DG403100
rosa_wichuraiana	Rw2G051960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	453
Acc36I	ACCTGC	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	228
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	176, 326, 358, 374, 402
AluBI	AGCT	2 cut(s)	352, 380
AluI	AGCT	2 cut(s)	352, 380
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	117
Alw44I	GTGCAC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	125
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	285
BauI	CACGAG	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	349
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	272
BclI	TGATCA	1 cut(s)	202
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	3 cut(s)	309, 390, 435
BfmI	CTRYAG	1 cut(s)	467
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	336
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	33
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	6 cut(s)	20, 53, 94, 103, 140, 229
BmuI	ACTGGG	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	267, 299
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	381
BsaWI	WCCGGW	1 cut(s)	364
Bse1I	ACTGG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	322
BshFI	GGCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	1 cut(s)	365
BslFI	GGGAC	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	285, 349
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	3 cut(s)	102, 140, 202
Bsp1720I	GCTNAGC	1 cut(s)	381
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	1 cut(s)	33
BspMI	ACCTGC	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	44
BssMI	GATC	3 cut(s)	102, 140, 202
BssSI	CACGAG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	420
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	381, 417
BstKTI	GATC	3 cut(s)	105, 143, 205
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	3 cut(s)	102, 140, 202
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 248, 335, 344
BstSFI	CTRYAG	1 cut(s)	467
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	190
CviJI	RGCY	9 cut(s)	32, 127, 185, 283, 312, 335, 352, 380, 416
CviKI_1	RGCY	9 cut(s)	32, 127, 185, 283, 312, 335, 352, 380, 416
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	381, 417
DpnI	GATC	3 cut(s)	104, 142, 204
DpnII	GATC	3 cut(s)	102, 140, 202
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	117
FaiI	YATR	9 cut(s)	7, 9, 18, 56, 75, 440, 453, 459, 469
FaqI	GGGAC	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	1 cut(s)	336
FriOI	GRGCYC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	336
FspBI	CTAG	3 cut(s)	309, 390, 435
GluI	GCNGC	1 cut(s)	336
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	1 cut(s)	365
HinfI	GANTC	2 cut(s)	290, 409
HpaII	CCGG	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	168, 347
Hpy188I	TCNGA	2 cut(s)	102, 236
Hpy188III	TCNNGA	2 cut(s)	246, 261
Hpy8I	GTNNAC	2 cut(s)	168, 347
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	11, 131, 347, 396
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 248, 335, 344
HpyF3I	CTNAG	2 cut(s)	381, 417
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	102, 140, 202
LmnI	GCTCC	1 cut(s)	37
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	6 cut(s)	20, 53, 94, 103, 140, 229
MaeI	CTAG	3 cut(s)	309, 390, 435
MalI	GATC	3 cut(s)	104, 142, 204
MboI	GATC	3 cut(s)	102, 140, 202
MboII	GAAGA	4 cut(s)	188, 370, 386, 437
MhlI	GDGCHC	2 cut(s)	285, 349
MluCI	AATT	4 cut(s)	179, 228, 397, 454
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	3 cut(s)	22, 335, 412
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	1 cut(s)	296
MspI	CCGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	4 cut(s)	91, 248, 335, 344
NdeII	GATC	3 cut(s)	102, 140, 202
NlaIV	GGNNCC	1 cut(s)	33
NsiI	ATGCAT	1 cut(s)	13
PfeI	GAWTC	1 cut(s)	409
PkrI	GCNGC	1 cut(s)	337
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	3 cut(s)	102, 140, 202
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	285, 349
SetI	ASST	7 cut(s)	61, 82, 346, 354, 382, 391, 407
SfaNI	GCATC	6 cut(s)	20, 53, 94, 103, 140, 229
SfcI	CTRYAG	1 cut(s)	467
Sse9I	AATT	4 cut(s)	179, 228, 397, 454
SspMI	CTAG	3 cut(s)	309, 390, 435
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	139
TasI	AATT	4 cut(s)	179, 228, 397, 454
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	335
TspGWI	ACGGA	2 cut(s)	99, 302
TspRI	CASTG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	345
XapI	RAATTY	1 cut(s)	228
XspI	CTAG	3 cut(s)	309, 390, 435
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.