Rh2BG638300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017420
Physical Location & Seq
Forward (+)
85866287 .. 85867082
796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG638300.1

Sequence Viewer

Length: 393 bp
ATGGATGGTTTGGCTACCAGGGTGGTAGCAGGATTTCCATTCGATGCAGAAGTGAAGGCTGCGAAGCTTGCTTGTTCTCTTGCCTTGGATTATAAGAGTTTGAAGATCGAGTTCGAAGGTGGAAGTGAATTATTGACTAACCAAGTTGTTGGAAGAACGCTTCTGGATTCAAAGTGGACCGCAAGAAGGTTAGTGGATGATATAAAGCTTAGCTTAGGAGAGCTCACTGCTGGTAATTCCTGGTCCCATTGTGTGAAGACAGGCAATGTGGTGGCCTCCTACTTTTCATCCCGGTTGTGTGAAAGCGAATTTGTTGAAGGAGGGCAGTGGATGGTTGATCTTGAAGAGATTTTGAAGGAAGATATGAAGGCTGTTTCCGTAGGTGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.16

Weight (kDa)

4.77

Isoelectric Point (pI)

29.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 93
AciI CCGC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 186
AgsI TTSAA 5 cut(s) 103, 171, 317, 344, 355
AjnI CCWGG 2 cut(s) 17, 239
AluBI AGCT 4 cut(s) 67, 208, 213, 223
AluI AGCT 4 cut(s) 67, 208, 213, 223
Alw21I GWGCWC 1 cut(s) 225
AoxI GGCC 1 cut(s) 273
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 177, 243
AsuC2I CCSGG 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 114
AvaII GGWCC 2 cut(s) 177, 243
BanII GRGCYC 1 cut(s) 225
BbsI GAAGAC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 325
BciT130I CCWGG 2 cut(s) 19, 241
BcnI CCSGG 1 cut(s) 292
BisI GCNGC 1 cut(s) 60
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 3 cut(s) 19, 241, 292
Bme18I GGWCC 2 cut(s) 177, 243
BmgT120I GGNCC 2 cut(s) 177, 243
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 3 cut(s) 19, 241, 292
BmsI GCATC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 214
Bpu1102I GCTNAGC 1 cut(s) 209
Bpu14I TTCGAA 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 292
BsaJI CCNNGG 2 cut(s) 18, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 2 cut(s) 19, 241
BseDI CCNNGG 2 cut(s) 18, 84
BseGI GGATG 4 cut(s) 10, 202, 287, 336
BseLI CCNNNNNNNGG 1 cut(s) 186
BseMI GCAATG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 229
BsnI GGCC 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 2 cut(s) 105, 337
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 245
BspT104I TTCGAA 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 271
BssECI CCNNGG 2 cut(s) 18, 84
BssMI GATC 2 cut(s) 105, 337
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 19, 241
Bst6I CTCTTC 1 cut(s) 339
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 209, 214
BstF5I GGATG 4 cut(s) 10, 202, 287, 336
BstKTI GATC 2 cut(s) 108, 340
BstMBI GATC 2 cut(s) 105, 337
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 2 cut(s) 19, 241
BstSCI CCNGG 3 cut(s) 17, 239, 290
BstV1I GCAGC 1 cut(s) 46
BstV2I GAAGAC 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 149
BsuRI GGCC 1 cut(s) 275
BtsCI GGATG 4 cut(s) 10, 202, 287, 336
BtsI GCAGTG 2 cut(s) 225, 332
BtsIMutI CAGTG 2 cut(s) 225, 332
Cac8I GCNNGC 1 cut(s) 69
Cfr13I GGNCC 2 cut(s) 177, 243
CviJI RGCY 8 cut(s) 14, 59, 67, 208, 213, 223, 275, 371
CviKI_1 RGCY 8 cut(s) 14, 59, 67, 208, 213, 223, 275, 371
DdeI CTNAG 2 cut(s) 209, 214
DpnI GATC 2 cut(s) 107, 339
DpnII GATC 2 cut(s) 105, 337
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 177, 243
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 17, 239
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 84
FaiI YATR 3 cut(s) 93, 203, 365
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 4 cut(s) 17, 209, 274, 343
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 275
HapII CCGG 1 cut(s) 292
HindIII AAGCTT 2 cut(s) 65, 206
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 292
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 164, 341
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 6 cut(s) 49, 110, 180, 311, 349, 361
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 209, 214
Kzo9I GATC 2 cut(s) 105, 337
LpnPI CCDG 9 cut(s) 4, 15, 31, 149, 216, 226, 246, 253, 305
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 1 cut(s) 34
MalI GATC 2 cut(s) 107, 339
MboI GATC 2 cut(s) 105, 337
MboII GAAGA 5 cut(s) 115, 165, 268, 356, 371
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 3 cut(s) 128, 235, 308
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 2 cut(s) 286, 314
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 3 cut(s) 19, 241, 292
MvaI CCWGG 2 cut(s) 19, 241
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 1 cut(s) 292
NdeII GATC 2 cut(s) 105, 337
NlaIV GGNNCC 1 cut(s) 245
NspV TTCGAA 1 cut(s) 114
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 61
PsiI TTATAA 1 cut(s) 93
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 17, 239
PspGI CCWGG 2 cut(s) 17, 239
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 2 cut(s) 177, 243
SacI GAGCTC 1 cut(s) 225
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 105, 337
Sau96I GGNCC 2 cut(s) 177, 243
ScrFI CCNGG 3 cut(s) 19, 241, 292
SduI GDGCHC 1 cut(s) 225
SetI ASST 7 cut(s) 69, 121, 191, 210, 215, 225, 385
SfaNI GCATC 1 cut(s) 34
SfuI TTCGAA 1 cut(s) 114
SinI GGWCC 2 cut(s) 177, 243
Sse9I AATT 3 cut(s) 128, 235, 308
SsiI CCGC 1 cut(s) 180
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 17, 239, 290
StyI CCWWGG 1 cut(s) 84
TaqI TCGA 3 cut(s) 42, 108, 114
TasI AATT 3 cut(s) 128, 235, 308
TfiI GAWTC 1 cut(s) 167
TscAI CASTG 2 cut(s) 232, 332
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 276, 380
TspGWI ACGGA 1 cut(s) 367
TspRI CASTG 2 cut(s) 232, 332
VpaK11BI GGWCC 2 cut(s) 177, 243
XapI RAATTY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.