Rroxscaffold_3G00269400

Mediator of RNA polymerase II transcription subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017665
Physical Location & Seq
Reverse (-)
62291695 .. 62298738
7044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269400.1

Sequence Viewer

Length: 1803 bp
ATGGCGGCAGAAAAGCGGCTTATGGTGGTCGTCGACGGAACAACAGCTATGGGGCCTTACTGGAAATCCGTTCTCTCAGATTACCTCGAAAAGATCATCAGGAACACATGTGGCCAATCGTCAGCTAACCAGGTATCTTTATTTGAACTGATCATACACATTCCTGGGATAAAAGATGCTTCAGCTGGTGCAGCAGTATTCCTGGGCCTGGTTCAGTATAATTCTCACGGACTTGGTAATACTGGTTCCTTAACGCGACCAAGTCCTTGGACTAGAAATGTGGATGGGTTTCTTGAAGGGCTCTCGGCTTTACATTTTTCTGGTGGTGGTGGTCCTAATGAAGCCGCCATTGCTGGGGGGCTGGCAGAAGCACTTGTGATGTTTCCGAAGCCTACTCCCACTGGGACTGGAACTGAAACTGAAACTGATCAAGTTCAAGACCATAATGCCAGAGAAAGGCATTGTATTCTTGTGGCTGCAAGCAACCCTGTGTTGTTTCGAACCGCCGTTCAGATACCGATAATAAGTAATGGCCAATTTTCTTCTGGTACACAAACTCGATGGACTCTTGCTGATGCTCAAGATGTTGCCAAATTATATGCTGAGTGCTCTGTATCTCTTTCTGTGATCTCACCAAAACAGTTTCCAATACTCAGAGAGATATACAGTGCGGGATATATTGATGATCCTGAAGGAACACCTTCCTTCAGCGATGCGAACAATCCTGACGTACTTCTTCTTTTGTCGAAGGACTTCTTAGAGGCTCATGCTGCCCTTATTCAGTATGCAGAAGTGAACATACTGTCAGCTCAGGAGATAAGTCAGATAACAGACTCTGAGCTTGAATATATTGCTTTAGAAGTTTCTGATTTACCAGTACATTTCGGAGACAACAGTGAGTTTGATTATATAGGAGATATGTTGGATCCACCCGAGACAGATAAGCAAGATCATCGTGCAGAGAACATTCTCAATGAAACCGAAGAAATGGTAATTTTCTTTCAATGCCCTCTTCAAGTAATGCATCTTCCTTTAATCTGTATATGGAAATCAATTAAAACCGTCATCTGTGGACTTCTACAGCTTCTTGCAGCAACACATGACAGTTTTTCACAAGCACCTTCACCCAGCTGTTTCATTAGTGAGACATTGTCCGGTAGCCGTATTCAGTACCCCGAAGTACACGCAAGGGGATCTGAAGCCGGAGAAAGTACTGCTAGTACCACACAAGCAGAACTCCGCTCTCCAAAGTATGCGCAACAAATACTTGCAACTCGTACCATAAGTGGAGTACACAGATCGCAAGGATCTTGCAGGGATCCAAATAGTCCACAAACCACAACTTCTTTGGACACTTTAGCAACAACTTCTGGCAACTCAAGGGGTCCACGAGCATCTTCACGTACTCAAAGATCTCAAATAAATATGGATCCTAATTTCAAACCAAGAAGAAGTCCAAGAATTGCATCAAGAGCTACTGTGGAACAAGGAGGACATGAAGGTGCTTTTGGTCGGTTTGGGGAACCATCTGGTCCGCACACATCAGTATCTGTGCAAAGAAGACCTGCACGAAAAGGATTGAAGCCTCCTCCTGCTAGTATGCAATGGAAAGAAGACATATACGATCTAGCATGGGAGGTGTTTTATCCAATTGTTTTGCTTGTACAAAGCCTCATTACTTCAAGTACACAAAAGTCATTGATAATGATCTTGCCTAAAAAAGATTTCTGTCCTTGCATTCTTTTTGAGCTTTCAGGGTACGTTCTTCGCCAAGCATCAAGAACGGCTTGTTCTAGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009639 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010017 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010114 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010927 GO:0016043 GO:0016592 GO:0019219 GO:0019222 GO:0022607 GO:0023052 GO:0030030 GO:0030031 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071395 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080134 GO:0090558 GO:0090626 GO:0097159 GO:0098542 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905499 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Med25_VWA

Protein Analysis

600

Amino Acids

65.28

Weight (kDa)

5.52

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med25_VWA PF11265 4 - 249 3.4e-26 Mediator complex subunit 25 von Willebrand factor type A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12601 FvH4_5g12610
rosa_chinensis RchiOBHm_Chr7g0184721
rosa_laevigata RLG00000004956
rosa_multiflora Rmu_ssc0000289.1_g000020
rosa_roxburghii Rroxscaffold_3G00269400
rosa_rugosa Rorug06G0464700
rosa_samantha Rh7AG078200 Rh7BG069100 Rh7CG069900 Rh7DG069300
rosa_wichuraiana Rw7G005720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1257
Acc36I ACCTGC 1 cut(s) 1573
AccBSI CCGCTC 1 cut(s) 1242
AccI GTMKAC 1 cut(s) 33
AccII CGCG 1 cut(s) 256
AciI CCGC 7 cut(s) 5, 16, 345, 504, 671, 1240, 1535
AclWI GGATC 9 cut(s) 680, 920, 933, 1201, 1313, 1315, 1326, 1424, 1437
AcoI YGGCCR 2 cut(s) 112, 532
AcuI CTGAAG 4 cut(s) 165, 691, 711, 1218
AfiI CCNNNNNNNGG 3 cut(s) 208, 354, 456
AflIII ACRYGT 1 cut(s) 107
AgsI TTSAA 9 cut(s) 146, 296, 437, 845, 1004, 1016, 1441, 1582, 1683
AjnI CCWGG 4 cut(s) 129, 163, 201, 207
AjuI GAANNNNNNNTTGG 2 cut(s) 1491, 1523
AluBI AGCT 9 cut(s) 47, 125, 185, 809, 841, 1084, 1131, 1475, 1750
AluI AGCT 9 cut(s) 47, 125, 185, 809, 841, 1084, 1131, 1475, 1750
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 3 cut(s) 882, 929, 1139
AlwI GGATC 9 cut(s) 680, 920, 933, 1201, 1313, 1315, 1326, 1424, 1437
AlwNI CAGNNNCTG 2 cut(s) 836, 1550
Ama87I CYCGRG 1 cut(s) 932
AoxI GGCC 4 cut(s) 53, 112, 205, 532
ApeKI GCWGC 4 cut(s) 191, 476, 770, 1091
Asp700I GAANNNNTTC 2 cut(s) 700, 752
AspLEI GCGC 1 cut(s) 1258
AspS9I GGNCC 5 cut(s) 53, 205, 332, 1385, 1532
AsuHPI GGTGA 2 cut(s) 624, 1116
AsuII TTCGAA 1 cut(s) 499
AvaI CYCGRG 1 cut(s) 932
AvaII GGWCC 3 cut(s) 332, 1385, 1532
BaeI ACNNNNGTAYC 2 cut(s) 1530, 1563
BalI TGGCCA 2 cut(s) 114, 534
BamHI GGATCC 3 cut(s) 925, 1318, 1429
BanII GRGCYC 1 cut(s) 303
BarI GAAGNNNNNNTAC 4 cut(s) 783, 815, 1011, 1043
BauI CACGAG 1 cut(s) 1389
BbsI GAAGAC 2 cut(s) 1567, 1620
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 4 cut(s) 203, 463, 757, 1103
BccI CCATC 3 cut(s) 278, 555, 1534
BceAI ACGGC 3 cut(s) 491, 1146, 1800
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 4 cut(s) 131, 165, 203, 209
BclI TGATCA 2 cut(s) 150, 427
BcoDI GTCTC 3 cut(s) 882, 929, 1139
BfaI CTAG 5 cut(s) 273, 1218, 1596, 1628, 1794
BfmI CTRYAG 1 cut(s) 1079
BfuAI ACCTGC 1 cut(s) 1573
BglII AGATCT 1 cut(s) 1412
BisI GCNGC 7 cut(s) 6, 17, 192, 345, 477, 771, 1092
BlsI GCNGC 7 cut(s) 7, 18, 193, 346, 478, 772, 1093
BmcAI AGTACT 1 cut(s) 1213
Bme1390I CCNGG 4 cut(s) 131, 165, 203, 209
Bme18I GGWCC 3 cut(s) 332, 1385, 1532
BmeT110I CYCGRG 1 cut(s) 932
BmgT120I GGNCC 5 cut(s) 53, 205, 332, 1385, 1532
BmiI GGNNCC 7 cut(s) 54, 247, 927, 1320, 1386, 1431, 1524
BmrFI CCNGG 4 cut(s) 131, 165, 203, 209
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 7 cut(s) 166, 565, 703, 1033, 1403, 1475, 1784
BmuI ACTGGG 1 cut(s) 411
BpiI GAAGAC 2 cut(s) 1567, 1620
Bpu10I CCTNAGC 1 cut(s) 810
Bpu14I TTCGAA 1 cut(s) 499
BpuEI CTTGAG 2 cut(s) 564, 1363
BsaAI YACGTR 1 cut(s) 1403
BsaBI GATNNNNATC 1 cut(s) 1706
BsaJI CCNNGG 3 cut(s) 164, 202, 266
BsaWI WCCGGW 1 cut(s) 1154
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 354, 456
Bse1I ACTGG 5 cut(s) 65, 247, 406, 412, 875
Bse3DI GCAATG 2 cut(s) 348, 1610
Bse8I GATNNNNATC 1 cut(s) 1706
BseBI CCWGG 4 cut(s) 131, 165, 203, 209
BseDI CCNNGG 3 cut(s) 164, 202, 266
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 1706
BseLI CCNNNNNNNGG 3 cut(s) 208, 354, 456
BseMI GCAATG 2 cut(s) 348, 1610
BseMII CTCAG 5 cut(s) 90, 594, 667, 824, 828
BseNI ACTGG 5 cut(s) 65, 247, 406, 412, 875
BseRI GAGGAG 1 cut(s) 1578
BseXI GCAGC 4 cut(s) 203, 463, 757, 1103
BseYI CCCAGC 2 cut(s) 353, 1127
BsgI GTGCAG 3 cut(s) 210, 978, 1551
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 4 cut(s) 55, 114, 207, 534
BsiHKAI GWGCWC 1 cut(s) 611
BsiHKCI CYCGRG 1 cut(s) 932
BsiSI CCGG 2 cut(s) 1155, 1203
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 3 cut(s) 208, 354, 456
BsmAI GTCTC 3 cut(s) 882, 929, 1139
BsmFI GGGAC 1 cut(s) 418
BsmI GAATGC 1 cut(s) 1737
BsnI GGCC 4 cut(s) 55, 114, 207, 534
BsoBI CYCGRG 1 cut(s) 932
Bsp119I TTCGAA 1 cut(s) 499
Bsp1286I GDGCHC 2 cut(s) 303, 611
Bsp1407I TGTACA 1 cut(s) 1663
BspACI CCGC 7 cut(s) 5, 16, 345, 504, 671, 1240, 1535
BspANI GGCC 4 cut(s) 55, 114, 207, 534
BspCNI CTCAG 5 cut(s) 89, 595, 666, 823, 829
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 7 cut(s) 54, 247, 927, 1320, 1386, 1431, 1524
BspMI ACCTGC 1 cut(s) 1573
BspPI GGATC 9 cut(s) 680, 920, 933, 1201, 1313, 1315, 1326, 1424, 1437
BspT104I TTCGAA 1 cut(s) 499
BsrBI CCGCTC 1 cut(s) 1242
BsrDI GCAATG 2 cut(s) 348, 1610
BsrGI TGTACA 1 cut(s) 1663
BsrI ACTGG 5 cut(s) 65, 247, 406, 412, 875
BssECI CCNNGG 3 cut(s) 164, 202, 266
BssSI CACGAG 1 cut(s) 1389
BssT1I CCWWGG 1 cut(s) 266
Bst2BI CACGAG 1 cut(s) 1389
Bst2UI CCWGG 4 cut(s) 131, 165, 203, 209
Bst4CI ACNGT 7 cut(s) 642, 668, 804, 896, 1063, 1106, 1480
Bst6I CTCTTC 1 cut(s) 1017
BstAUI TGTACA 1 cut(s) 1663
BstBAI YACGTR 1 cut(s) 1403
BstBI TTCGAA 1 cut(s) 499
BstC8I GCNNGC 2 cut(s) 363, 481
BstDEI CTNAG 6 cut(s) 76, 603, 653, 757, 810, 837
BstF5I GGATG 1 cut(s) 289
BstFNI CGCG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 1258
BstMAI GTCTC 3 cut(s) 882, 929, 1139
BstMWI GCNNNNNNNGC 4 cut(s) 191, 350, 770, 1472
BstNI CCWGG 4 cut(s) 131, 165, 203, 209
BstNSI RCATGY 1 cut(s) 111
BstSCI CCNGG 4 cut(s) 129, 163, 201, 207
BstSFI CTRYAG 1 cut(s) 1079
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 4 cut(s) 203, 463, 757, 1103
BstV2I GAAGAC 2 cut(s) 1567, 1620
BstX2I RGATCY 6 cut(s) 925, 1193, 1307, 1318, 1412, 1429
BstXI CCANNNNNNTGG 1 cut(s) 267
BstYI RGATCY 6 cut(s) 925, 1193, 1307, 1318, 1412, 1429
BsuRI GGCC 4 cut(s) 55, 114, 207, 534
BtgZI GCGATG 1 cut(s) 726
BtsCI GGATG 1 cut(s) 289
BtsIMutI CAGTG 3 cut(s) 399, 673, 901
BveI ACCTGC 1 cut(s) 1573
Cac8I GCNNGC 2 cut(s) 363, 481
CaiI CAGNNNCTG 2 cut(s) 836, 1550
CfoI GCGC 1 cut(s) 1258
Cfr13I GGNCC 5 cut(s) 53, 205, 332, 1385, 1532
CsiI ACCWGGT 1 cut(s) 129
CviAII CATG 5 cut(s) 108, 767, 1100, 1496, 1632
DdeI CTNAG 6 cut(s) 76, 603, 653, 757, 810, 837
EaeI YGGCCR 2 cut(s) 112, 532
Eam1104I CTCTTC 1 cut(s) 1017
EarI CTCTTC 1 cut(s) 1017
Eco130I CCWWGG 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 3 cut(s) 332, 1385, 1532
Eco57I CTGAAG 4 cut(s) 165, 691, 711, 1218
Eco88I CYCGRG 1 cut(s) 932
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 4 cut(s) 129, 163, 201, 207
EcoT14I CCWWGG 1 cut(s) 266
EcoT22I ATGCAT 1 cut(s) 1026
EcoT38I GRGCYC 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 266
FaeI CATG 5 cut(s) 111, 770, 1103, 1499, 1635
FalI AAGNNNNNCTT 4 cut(s) 740, 772, 1771, 1803
FaqI GGGAC 1 cut(s) 418
FatI CATG 5 cut(s) 107, 766, 1099, 1495, 1631
FauI CCCGC 1 cut(s) 664
FbaI TGATCA 2 cut(s) 150, 427
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 7 cut(s) 6, 17, 192, 345, 477, 771, 1092
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 303
Fsp4HI GCNGC 7 cut(s) 6, 17, 192, 345, 477, 771, 1092
FspBI CTAG 5 cut(s) 273, 1218, 1596, 1628, 1794
FspI TGCGCA 1 cut(s) 1257
GlaI GCGC 1 cut(s) 1257
GluI GCNGC 7 cut(s) 6, 17, 192, 345, 477, 771, 1092
GsaI CCCAGC 2 cut(s) 357, 1131
HaeIII GGCC 4 cut(s) 55, 114, 207, 534
HapII CCGG 2 cut(s) 1155, 1203
HhaI GCGC 1 cut(s) 1258
Hin1II CATG 5 cut(s) 111, 770, 1103, 1499, 1635
Hin6I GCGC 1 cut(s) 1256
HinP1I GCGC 1 cut(s) 1256
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 2 cut(s) 565, 833
HpaII CCGG 2 cut(s) 1155, 1203
HphI GGTGA 2 cut(s) 624, 1116
Hpy166II GTNNAC 9 cut(s) 34, 551, 796, 1073, 1183, 1294, 1331, 1388, 1688
Hpy188I TCNGA 9 cut(s) 79, 387, 513, 656, 825, 838, 868, 887, 1198
Hpy188III TCNNGA 9 cut(s) 100, 293, 437, 581, 689, 725, 812, 1470, 1779
Hpy8I GTNNAC 9 cut(s) 34, 551, 796, 1073, 1183, 1294, 1331, 1388, 1688
Hpy99I CGWCG 2 cut(s) 35, 38
HpyAV CCTTC 7 cut(s) 290, 686, 711, 715, 742, 1131, 1493
HpyCH4III ACNGT 7 cut(s) 642, 668, 804, 896, 1063, 1106, 1480
HpyCH4IV ACGT 3 cut(s) 729, 1402, 1761
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 350, 770, 1472
HpyF3I CTNAG 6 cut(s) 76, 603, 653, 757, 810, 837
HpySE526I ACGT 3 cut(s) 729, 1402, 1761
Hsp92II CATG 5 cut(s) 111, 770, 1103, 1499, 1635
HspAI GCGC 1 cut(s) 1256
Ksp22I TGATCA 2 cut(s) 150, 427
Lsp1109I GCAGC 4 cut(s) 203, 463, 757, 1103
LweI GCATC 7 cut(s) 166, 565, 703, 1033, 1403, 1475, 1784
MabI ACCWGGT 1 cut(s) 129
MaeI CTAG 5 cut(s) 273, 1218, 1596, 1628, 1794
MaeII ACGT 3 cut(s) 729, 1402, 1761
MbiI CCGCTC 1 cut(s) 1242
MfeI CAATTG 1 cut(s) 1650
MflI RGATCY 6 cut(s) 925, 1193, 1307, 1318, 1412, 1429
MhlI GDGCHC 2 cut(s) 303, 611
MlsI TGGCCA 2 cut(s) 114, 534
MluCI AATT 8 cut(s) 220, 536, 593, 993, 1053, 1435, 1461, 1650
MluNI TGGCCA 2 cut(s) 114, 534
MlyI GAGTC 2 cut(s) 559, 827
MmeI TCCRAC 1 cut(s) 903
MnlI CCTC 8 cut(s) 95, 754, 1020, 1484, 1596, 1599, 1630, 1682
Mox20I TGGCCA 2 cut(s) 114, 534
Mph1103I ATGCAT 1 cut(s) 1026
MroXI GAANNNNTTC 2 cut(s) 700, 752
MscI TGGCCA 2 cut(s) 114, 534
MseI TTAA 3 cut(s) 251, 1034, 1056
MslI CAYNNNNRTG 1 cut(s) 1500
Msp20I TGGCCA 2 cut(s) 114, 534
MspA1I CMGCKG 2 cut(s) 185, 1131
MspI CCGG 2 cut(s) 1155, 1203
MspR9I CCNGG 4 cut(s) 131, 165, 203, 209
MunI CAATTG 1 cut(s) 1650
Mva1269I GAATGC 1 cut(s) 1737
MvaI CCWGG 4 cut(s) 131, 165, 203, 209
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 4 cut(s) 191, 350, 770, 1472
NlaIII CATG 5 cut(s) 111, 770, 1103, 1499, 1635
NlaIV GGNNCC 7 cut(s) 54, 247, 927, 1320, 1386, 1431, 1524
NmeAIII GCCGAG 1 cut(s) 284
NsbI TGCGCA 1 cut(s) 1257
NsiI ATGCAT 1 cut(s) 1026
NspI RCATGY 1 cut(s) 111
NspV TTCGAA 1 cut(s) 499
PciI ACATGT 1 cut(s) 107
PctI GAATGC 1 cut(s) 1737
PdmI GAANNNNTTC 2 cut(s) 700, 752
PflFI GACNNNGTC 2 cut(s) 261, 1150
PkrI GCNGC 7 cut(s) 7, 18, 193, 346, 478, 772, 1093
PleI GAGTC 2 cut(s) 559, 827
PpsI GAGTC 2 cut(s) 559, 827
Ppu21I YACGTR 1 cut(s) 1403
PscI ACATGT 1 cut(s) 107
Psp6I CCWGG 4 cut(s) 129, 163, 201, 207
PspFI CCCAGC 2 cut(s) 353, 1127
PspGI CCWGG 4 cut(s) 129, 163, 201, 207
PspN4I GGNNCC 7 cut(s) 54, 247, 927, 1320, 1386, 1431, 1524
PspPI GGNCC 5 cut(s) 53, 205, 332, 1385, 1532
PsrI GAACNNNNNNTAC 4 cut(s) 138, 170, 229, 261
PstNI CAGNNNCTG 2 cut(s) 836, 1550
PsuI RGATCY 6 cut(s) 925, 1193, 1307, 1318, 1412, 1429
PsyI GACNNNGTC 2 cut(s) 261, 1150
PvuII CAGCTG 2 cut(s) 185, 1131
RseI CAYNNNNRTG 1 cut(s) 1500
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 251, 1034, 1056
SatI GCNGC 7 cut(s) 6, 17, 192, 345, 477, 771, 1092
Sau96I GGNCC 5 cut(s) 53, 205, 332, 1385, 1532
ScaI AGTACT 1 cut(s) 1213
SchI GAGTC 2 cut(s) 559, 827
ScrFI CCNGG 4 cut(s) 131, 165, 203, 209
SduI GDGCHC 2 cut(s) 303, 611
SexAI ACCWGGT 1 cut(s) 129
SfaNI GCATC 7 cut(s) 166, 565, 703, 1033, 1403, 1475, 1784
SfcI CTRYAG 1 cut(s) 1079
SfuI TTCGAA 1 cut(s) 499
SgrDI CGTCGACG 1 cut(s) 32
SinI GGWCC 3 cut(s) 332, 1385, 1532
SmiMI CAYNNNNRTG 1 cut(s) 1500
SmlI CTYRAG 2 cut(s) 579, 1378
SmoI CTYRAG 2 cut(s) 579, 1378
Sse9I AATT 8 cut(s) 220, 536, 593, 993, 1053, 1435, 1461, 1650
SsiI CCGC 7 cut(s) 5, 16, 345, 504, 671, 1240, 1535
SspMI CTAG 5 cut(s) 273, 1218, 1596, 1628, 1794
StyD4I CCNGG 4 cut(s) 129, 163, 201, 207
StyI CCWWGG 1 cut(s) 266
TaaI ACNGT 7 cut(s) 642, 668, 804, 896, 1063, 1106, 1480
TaiI ACGT 3 cut(s) 732, 1405, 1764
TaqI TCGA 5 cut(s) 33, 87, 499, 559, 746
TasI AATT 8 cut(s) 220, 536, 593, 993, 1053, 1435, 1461, 1650
TatI WGTACW 6 cut(s) 877, 1180, 1211, 1291, 1663, 1685
TauI GCSGC 3 cut(s) 8, 19, 347
Tru1I TTAA 3 cut(s) 251, 1034, 1056
Tru9I TTAA 3 cut(s) 251, 1034, 1056
TscAI CASTG 3 cut(s) 406, 673, 901
TseI GCWGC 4 cut(s) 191, 476, 770, 1091
TspDTI ATGAA 4 cut(s) 354, 990, 1126, 1512
TspGWI ACGGA 3 cut(s) 51, 58, 243
TspRI CASTG 3 cut(s) 406, 673, 901
Tth111I GACNNNGTC 2 cut(s) 261, 1150
VpaK11BI GGWCC 3 cut(s) 332, 1385, 1532
XceI RCATGY 1 cut(s) 111
XcmI CCANNNNNNNNNTGG 2 cut(s) 542, 1345
XmiI GTMKAC 1 cut(s) 33
XmnI GAANNNNTTC 2 cut(s) 700, 752
XspI CTAG 5 cut(s) 273, 1218, 1596, 1628, 1794
ZrmI AGTACT 1 cut(s) 1213
Zsp2I ATGCAT 1 cut(s) 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.