Rh7CG069900

mediator of RNA polymerase II transcription subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0017665
Physical Location & Seq
Forward (+)
5004530 .. 5011799
7270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG069900.1

Sequence Viewer

Length: 1830 bp
ATGGCGGCAGAAAAGCGGCTTATGGTGGTCGTCGACGGAACAACAGCTATGGGGCCTTACTGGAAATCCATTCTCTCAGATTACCTCGAAAAGATCATCAGGAACATAAGTGGCCAACCGTCAGCTAACCAGGATGCTTCAGCTGGTGCAGCAGTATACCTGGGCCTGGTTCAGTATAATTCTCACGGACTTGATAACACTGGTTCCTTAACGCGACCAAGTCCTTGGACTAGAAATGTGGATGGGTTTCTTGAAAGGCTCTCGGCTTTACATTTTTCTGGTGGTGGTGGTCCTAATGAAGCCGCCATTGCTGGGGGGCTGGCAGAAGCACTTGTGATGTTTCCGAAGCCTACTCCCACTGGAACTGGAACTGAAACTGATCTTCAAGACCATAATGCCAGAGAAAGGCATTGTATTCTTGTGGCTGCAAGCAACCCTGTGTTGTTTCGAACCGCCGTTCAGATACCGATAATAAGTAATGGCCAATTTTCTTCTGGTACACAAACTCGATGGACTCTTGCTGATGCTCAAGATGTTGCCAAATTATATGCTGAGTGCTCTGTATCTCTTTCTGTGATCTCACCAAAACAGTTTCCAAAACTCCGAGAGATATACAATGCGGGATATATTGATGATCCTGAAGGAACACCTTCCTTCAGCGATGCGAACAATCCTGACGTACTTCTTCTTTTGTCGAAGGACTTCTTAGAGGCTCATGCTGCCCTTATTCAGTATGTAGAAGTGAACATACTGTCAGTTCGGGAGATAAGTCAGATAACAGACTCTGAGCTTGAATATATTGCTTTAGTACATTTCGGAGACAACAGTGAGTTTGATTATATAGGAGATATGTTGGATCCACCCGAGACAGATAAGCAAGATCATCTTGCAGAGAACATTCTCAATGAAACCGAAGAAATGCTTCTTGCAGCAACAGAAGACAGTTTTTCACAAGCACCTTCACCCAGCTGTTTCATTCGTGAGACATTGTCCAGTAGCCTTATTCAGTACCCCGAAGTACAGGCAAGGGGATCTGAAGCCGGAGAAAGTAGTACTGCTAGTACTACACAAGCAGAACTCCACTCTCCACAGCATGCGCAACAAATACTTGCAACTCGTACCGTAAGTGGAGTACACAGATCGCAAGGATCTTGCAGCGATCCAAATAGTCCACAAACCACAATTTCTTTAGACACTTCAGCAACAACTTCTGGCAACTCAAGGTGCCCACGAGCATCTTCACGTACTCAAAGATCTCAAATAAGTATGGATCCTAATTTCAAACCAAGAAGAAGTCCAAGAATTGCATCAAGAGCTACTGTGGAACAAGGACGACATGAAGGTGCTTTTGGTCGGTTTGGGGAACCATCTGGTCCACACACATCAGTATCTGTGCAAAGAAGACCTGCACGAAAAGGATTGAAGCCTCTTCGAGCTAGTATGCAATGGAAAGAAGACATATACGAGCTAGCATGGGAGGGTACGATCTTCTCCAAGCATCAAGAACGGCTTGTTCTAGTCAGTAAGGCAAAGGCGCACAAGATGAAGTCTGCACCAGAGAGTCTTACTACTGGTTGGCCACGACTGCTGAAGATGGGTAATGTTATACCAGAAGCCACTGTTGGCAGGTTGTTATATGAAGGACAAGCCCATGATTTGATCTTTGAGATTACGGGTGACGAGAAAATATATGACCTACTAAATGAGAACGAGCTGGGGAAGGACCTCCAGTGGAGCAACATATGGTTGAACAATACAATCAAAGAAAGCATCAGCAACAGCAATATGCCACAACTGGTACAAAACTGCGCAGTGAGCTTTCAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009639 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010017 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010114 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010927 GO:0016043 GO:0016592 GO:0019219 GO:0019222 GO:0022607 GO:0023052 GO:0030030 GO:0030031 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071395 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080134 GO:0090558 GO:0090626 GO:0097159 GO:0098542 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905499 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Med25_VWA

Protein Analysis

609

Amino Acids

66.67

Weight (kDa)

5.37

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med25_VWA PF11265 4 - 232 4.5e-33 Mediator complex subunit 25 von Willebrand factor type A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12601 FvH4_5g12610
rosa_chinensis RchiOBHm_Chr7g0184721
rosa_laevigata RLG00000004956
rosa_multiflora Rmu_ssc0000289.1_g000020
rosa_roxburghii Rroxscaffold_3G00269400
rosa_rugosa Rorug06G0464700
rosa_samantha Rh7AG078200 Rh7BG069100 Rh7CG069900 Rh7DG069300
rosa_wichuraiana Rw7G005720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 1098, 1810
Acc36I ACCTGC 2 cut(s) 1414, 1617
AccB1I GGYRCC 1 cut(s) 1224
AccI GTMKAC 2 cut(s) 33, 156
AccII CGCG 1 cut(s) 214
AciI CCGC 5 cut(s) 5, 16, 303, 453, 620
AclWI GGATC 8 cut(s) 629, 851, 864, 1039, 1154, 1156, 1265, 1278
AcoI YGGCCR 3 cut(s) 112, 481, 1577
AcuI CTGAAG 6 cut(s) 123, 640, 660, 1056, 1182, 1610
AfiI CCNNNNNNNGG 3 cut(s) 166, 312, 405
AgsI TTSAA 7 cut(s) 254, 386, 794, 1282, 1423, 1750, 1823
AjnI CCWGG 3 cut(s) 129, 159, 165
AjuI GAANNNNNNNTTGG 4 cut(s) 1332, 1364, 1605, 1637
Alw21I GWGCWC 1 cut(s) 560
Alw26I GTCTC 3 cut(s) 813, 860, 977
AlwI GGATC 8 cut(s) 629, 851, 864, 1039, 1154, 1156, 1265, 1278
AlwNI CAGNNNCTG 2 cut(s) 785, 1391
Ama87I CYCGRG 1 cut(s) 863
AoxI GGCC 5 cut(s) 53, 112, 163, 481, 1577
ApeKI GCWGC 5 cut(s) 149, 425, 719, 929, 1155
Asp700I GAANNNNTTC 3 cut(s) 649, 701, 921
AspLEI GCGC 3 cut(s) 1099, 1537, 1811
AspS9I GGNCC 5 cut(s) 53, 163, 290, 1373, 1723
AsuHPI GGTGA 3 cut(s) 573, 954, 1688
AsuII TTCGAA 1 cut(s) 448
AsuNHI GCTAGC 1 cut(s) 1468
AvaI CYCGRG 1 cut(s) 863
AvaII GGWCC 3 cut(s) 290, 1373, 1723
BaeGI GKGCMC 1 cut(s) 1229
BaeI ACNNNNGTAYC 2 cut(s) 1371, 1404
BalI TGGCCA 3 cut(s) 114, 483, 1579
BamHI GGATCC 2 cut(s) 856, 1270
BanI GGYRCC 1 cut(s) 1224
BarI GAAGNNNNNNTAC 2 cut(s) 732, 764
BauI CACGAG 1 cut(s) 1230
BbsI GAAGAC 3 cut(s) 945, 1408, 1461
Bbv12I GWGCWC 1 cut(s) 560
BbvI GCAGC 5 cut(s) 161, 412, 706, 941, 1167
BccI CCATC 4 cut(s) 236, 504, 1375, 1588
BceAI ACGGC 2 cut(s) 440, 1523
BciT130I CCWGG 3 cut(s) 131, 161, 167
BcoDI GTCTC 3 cut(s) 813, 860, 977
BfaI CTAG 5 cut(s) 231, 1059, 1437, 1469, 1517
BfuAI ACCTGC 2 cut(s) 1414, 1617
BglII AGATCT 1 cut(s) 1253
BisI GCNGC 8 cut(s) 6, 17, 150, 303, 426, 720, 930, 1156
BlsI GCNGC 8 cut(s) 7, 18, 151, 304, 427, 721, 931, 1157
BmcAI AGTACT 2 cut(s) 1054, 1063
Bme1390I CCNGG 3 cut(s) 131, 161, 167
Bme18I GGWCC 3 cut(s) 290, 1373, 1723
BmeT110I CYCGRG 1 cut(s) 863
BmgT120I GGNCC 5 cut(s) 53, 163, 290, 1373, 1723
BmiI GGNNCC 6 cut(s) 54, 205, 858, 1226, 1272, 1365
BmrFI CCNGG 3 cut(s) 131, 161, 167
BmsI GCATC 7 cut(s) 124, 514, 652, 1244, 1316, 1507, 1779
BmtI GCTAGC 1 cut(s) 1472
BpiI GAAGAC 3 cut(s) 945, 1408, 1461
BpmI CTGGAG 1 cut(s) 1712
Bpu14I TTCGAA 1 cut(s) 448
BpuEI CTTGAG 2 cut(s) 513, 1204
BsaAI YACGTR 1 cut(s) 1244
BsaJI CCNNGG 2 cut(s) 160, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 312, 405
Bse1I ACTGG 8 cut(s) 65, 205, 364, 370, 993, 1576, 1729, 1800
Bse3DI GCAATG 2 cut(s) 306, 1451
BseBI CCWGG 3 cut(s) 131, 161, 167
BseDI CCNNGG 2 cut(s) 160, 224
BseGI GGATG 2 cut(s) 139, 247
BseLI CCNNNNNNNGG 3 cut(s) 166, 312, 405
BseMI GCAATG 2 cut(s) 306, 1451
BseMII CTCAG 3 cut(s) 90, 543, 777
BseNI ACTGG 8 cut(s) 65, 205, 364, 370, 993, 1576, 1729, 1800
BseSI GKGCMC 1 cut(s) 1229
BseXI GCAGC 5 cut(s) 161, 412, 706, 941, 1167
BseYI CCCAGC 3 cut(s) 311, 965, 1714
BsgI GTGCAG 3 cut(s) 168, 1392, 1536
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 5 cut(s) 55, 114, 165, 483, 1579
BshNI GGYRCC 1 cut(s) 1224
BsiHKAI GWGCWC 1 cut(s) 560
BsiHKCI CYCGRG 1 cut(s) 863
BsiSI CCGG 1 cut(s) 1041
BslI CCNNNNNNNGG 3 cut(s) 166, 312, 405
BsmAI GTCTC 3 cut(s) 813, 860, 977
BsnI GGCC 5 cut(s) 55, 114, 165, 483, 1579
BsoBI CYCGRG 1 cut(s) 863
Bsp119I TTCGAA 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 560, 1229
BspACI CCGC 5 cut(s) 5, 16, 303, 453, 620
BspANI GGCC 5 cut(s) 55, 114, 165, 483, 1579
BspCNI CTCAG 3 cut(s) 89, 544, 778
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 6 cut(s) 54, 205, 858, 1226, 1272, 1365
BspMI ACCTGC 2 cut(s) 1414, 1617
BspOI GCTAGC 1 cut(s) 1472
BspPI GGATC 8 cut(s) 629, 851, 864, 1039, 1154, 1156, 1265, 1278
BspT104I TTCGAA 1 cut(s) 448
BspT107I GGYRCC 1 cut(s) 1224
BsrDI GCAATG 2 cut(s) 306, 1451
BsrI ACTGG 8 cut(s) 65, 205, 364, 370, 993, 1576, 1729, 1800
BssECI CCNNGG 2 cut(s) 160, 224
BssNAI GTATAC 1 cut(s) 157
BssSI CACGAG 1 cut(s) 1230
BssT1I CCWWGG 1 cut(s) 224
Bst1107I GTATAC 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 1230
Bst2UI CCWGG 3 cut(s) 131, 161, 167
Bst4CI ACNGT 8 cut(s) 120, 591, 753, 827, 944, 1123, 1321, 1621
Bst6I CTCTTC 1 cut(s) 1434
BstBAI YACGTR 1 cut(s) 1244
BstBI TTCGAA 1 cut(s) 448
BstC8I GCNNGC 4 cut(s) 321, 430, 1095, 1470
BstDEI CTNAG 4 cut(s) 76, 552, 706, 786
BstF5I GGATG 2 cut(s) 139, 247
BstFNI CGCG 1 cut(s) 214
BstHHI GCGC 3 cut(s) 1099, 1537, 1811
BstMAI GTCTC 3 cut(s) 813, 860, 977
BstMWI GCNNNNNNNGC 6 cut(s) 149, 308, 719, 1313, 1585, 1815
BstNI CCWGG 3 cut(s) 131, 161, 167
BstNSI RCATGY 1 cut(s) 1097
BstSCI CCNGG 3 cut(s) 129, 159, 165
BstSLI GKGCMC 1 cut(s) 1229
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 5 cut(s) 161, 412, 706, 941, 1167
BstV2I GAAGAC 3 cut(s) 945, 1408, 1461
BstX2I RGATCY 5 cut(s) 856, 1031, 1148, 1253, 1270
BstXI CCANNNNNNTGG 1 cut(s) 225
BstYI RGATCY 5 cut(s) 856, 1031, 1148, 1253, 1270
BstZ17I GTATAC 1 cut(s) 157
BsuRI GGCC 5 cut(s) 55, 114, 165, 483, 1579
BtgZI GCGATG 1 cut(s) 675
BtsCI GGATG 2 cut(s) 139, 247
BtsI GCAGTG 1 cut(s) 1818
BtsIMutI CAGTG 6 cut(s) 198, 357, 832, 1617, 1736, 1818
BveI ACCTGC 2 cut(s) 1414, 1617
Cac8I GCNNGC 4 cut(s) 321, 430, 1095, 1470
CaiI CAGNNNCTG 2 cut(s) 785, 1391
CfoI GCGC 3 cut(s) 1099, 1537, 1811
Cfr13I GGNCC 5 cut(s) 53, 163, 290, 1373, 1723
CviAII CATG 5 cut(s) 716, 1094, 1337, 1473, 1652
DdeI CTNAG 4 cut(s) 76, 552, 706, 786
EaeI YGGCCR 3 cut(s) 112, 481, 1577
Eam1104I CTCTTC 1 cut(s) 1434
EarI CTCTTC 1 cut(s) 1434
Eco130I CCWWGG 1 cut(s) 224
Eco47I GGWCC 3 cut(s) 290, 1373, 1723
Eco57I CTGAAG 6 cut(s) 123, 640, 660, 1056, 1182, 1610
Eco88I CYCGRG 1 cut(s) 863
EcoO109I RGGNCCY 2 cut(s) 53, 1723
EcoRII CCWGG 3 cut(s) 129, 159, 165
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 5 cut(s) 719, 1097, 1340, 1476, 1655
FalI AAGNNNNNCTT 8 cut(s) 689, 721, 870, 902, 906, 938, 1494, 1526
FatI CATG 5 cut(s) 715, 1093, 1336, 1472, 1651
FauI CCCGC 1 cut(s) 613
FauNDI CATATG 1 cut(s) 1742
FblI GTMKAC 2 cut(s) 33, 156
Fnu4HI GCNGC 8 cut(s) 6, 17, 150, 303, 426, 720, 930, 1156
FokI GGATG 2 cut(s) 146, 254
Fsp4HI GCNGC 8 cut(s) 6, 17, 150, 303, 426, 720, 930, 1156
FspBI CTAG 5 cut(s) 231, 1059, 1437, 1469, 1517
FspI TGCGCA 2 cut(s) 1098, 1810
GlaI GCGC 3 cut(s) 1098, 1536, 1810
GluI GCNGC 8 cut(s) 6, 17, 150, 303, 426, 720, 930, 1156
GsaI CCCAGC 3 cut(s) 315, 969, 1718
GsuI CTGGAG 1 cut(s) 1712
HaeIII GGCC 5 cut(s) 55, 114, 165, 483, 1579
HapII CCGG 1 cut(s) 1041
HhaI GCGC 3 cut(s) 1099, 1537, 1811
Hin1II CATG 5 cut(s) 719, 1097, 1340, 1476, 1655
Hin6I GCGC 3 cut(s) 1097, 1535, 1809
HinP1I GCGC 3 cut(s) 1097, 1535, 1809
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 3 cut(s) 514, 782, 1561
HpaII CCGG 1 cut(s) 1041
HphI GGTGA 3 cut(s) 573, 954, 1688
Hpy166II GTNNAC 7 cut(s) 34, 157, 500, 745, 1135, 1172, 1376
Hpy188I TCNGA 8 cut(s) 79, 345, 462, 605, 774, 787, 818, 1036
Hpy8I GTNNAC 7 cut(s) 34, 157, 500, 745, 1135, 1172, 1376
Hpy99I CGWCG 2 cut(s) 35, 38
HpyAV CCTTC 8 cut(s) 635, 660, 664, 691, 969, 1334, 1634, 1714
HpyCH4III ACNGT 8 cut(s) 120, 591, 753, 827, 944, 1123, 1321, 1621
HpyCH4IV ACGT 2 cut(s) 678, 1243
HpyF10VI GCNNNNNNNGC 6 cut(s) 149, 308, 719, 1313, 1585, 1815
HpyF3I CTNAG 4 cut(s) 76, 552, 706, 786
HpySE526I ACGT 2 cut(s) 678, 1243
Hsp92II CATG 5 cut(s) 719, 1097, 1340, 1476, 1655
HspAI GCGC 3 cut(s) 1097, 1535, 1809
LmnI GCTCC 1 cut(s) 1734
Lsp1109I GCAGC 5 cut(s) 161, 412, 706, 941, 1167
LweI GCATC 7 cut(s) 124, 514, 652, 1244, 1316, 1507, 1779
MaeI CTAG 5 cut(s) 231, 1059, 1437, 1469, 1517
MaeII ACGT 2 cut(s) 678, 1243
MaeIII GTNAC 1 cut(s) 1676
MflI RGATCY 5 cut(s) 856, 1031, 1148, 1253, 1270
MhlI GDGCHC 2 cut(s) 560, 1229
MlsI TGGCCA 3 cut(s) 114, 483, 1579
MluCI AATT 6 cut(s) 178, 485, 542, 1182, 1276, 1302
MluNI TGGCCA 3 cut(s) 114, 483, 1579
MlyI GAGTC 3 cut(s) 508, 776, 1570
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 5 cut(s) 95, 703, 1437, 1471, 1736
Mox20I TGGCCA 3 cut(s) 114, 483, 1579
MroXI GAANNNNTTC 3 cut(s) 649, 701, 921
MscI TGGCCA 3 cut(s) 114, 483, 1579
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 1341
Msp20I TGGCCA 3 cut(s) 114, 483, 1579
MspA1I CMGCKG 2 cut(s) 143, 969
MspI CCGG 1 cut(s) 1041
MspR9I CCNGG 3 cut(s) 131, 161, 167
MvaI CCWGG 3 cut(s) 131, 161, 167
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 6 cut(s) 149, 308, 719, 1313, 1585, 1815
NdeI CATATG 1 cut(s) 1742
NheI GCTAGC 1 cut(s) 1468
NlaIII CATG 5 cut(s) 719, 1097, 1340, 1476, 1655
NlaIV GGNNCC 6 cut(s) 54, 205, 858, 1226, 1272, 1365
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 1676
NsbI TGCGCA 2 cut(s) 1098, 1810
NspI RCATGY 1 cut(s) 1097
NspV TTCGAA 1 cut(s) 448
PaeI GCATGC 1 cut(s) 1097
PdmI GAANNNNTTC 3 cut(s) 649, 701, 921
PflFI GACNNNGTC 2 cut(s) 219, 988
PkrI GCNGC 8 cut(s) 7, 18, 151, 304, 427, 721, 931, 1157
PleI GAGTC 3 cut(s) 508, 776, 1569
PpsI GAGTC 3 cut(s) 508, 776, 1569
Ppu21I YACGTR 1 cut(s) 1244
PpuMI RGGWCCY 1 cut(s) 1723
Psp5II RGGWCCY 1 cut(s) 1723
Psp6I CCWGG 3 cut(s) 129, 159, 165
PspFI CCCAGC 3 cut(s) 311, 965, 1714
PspGI CCWGG 3 cut(s) 129, 159, 165
PspN4I GGNNCC 6 cut(s) 54, 205, 858, 1226, 1272, 1365
PspPI GGNCC 5 cut(s) 53, 163, 290, 1373, 1723
PspPPI RGGWCCY 1 cut(s) 1723
PstNI CAGNNNCTG 2 cut(s) 785, 1391
PsuI RGATCY 5 cut(s) 856, 1031, 1148, 1253, 1270
PsyI GACNNNGTC 2 cut(s) 219, 988
PvuII CAGCTG 2 cut(s) 143, 969
RseI CAYNNNNRTG 1 cut(s) 1341
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 8 cut(s) 6, 17, 150, 303, 426, 720, 930, 1156
Sau96I GGNCC 5 cut(s) 53, 163, 290, 1373, 1723
ScaI AGTACT 2 cut(s) 1054, 1063
SchI GAGTC 3 cut(s) 508, 776, 1570
ScrFI CCNGG 3 cut(s) 131, 161, 167
SduI GDGCHC 2 cut(s) 560, 1229
SfaNI GCATC 7 cut(s) 124, 514, 652, 1244, 1316, 1507, 1779
SfuI TTCGAA 1 cut(s) 448
SgrDI CGTCGACG 1 cut(s) 32
SinI GGWCC 3 cut(s) 290, 1373, 1723
SmiMI CAYNNNNRTG 1 cut(s) 1341
SmlI CTYRAG 2 cut(s) 528, 1219
SmoI CTYRAG 2 cut(s) 528, 1219
SphI GCATGC 1 cut(s) 1097
Sse9I AATT 6 cut(s) 178, 485, 542, 1182, 1276, 1302
SsiI CCGC 5 cut(s) 5, 16, 303, 453, 620
SspMI CTAG 5 cut(s) 231, 1059, 1437, 1469, 1517
StyD4I CCNGG 3 cut(s) 129, 159, 165
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 8 cut(s) 120, 591, 753, 827, 944, 1123, 1321, 1621
TaiI ACGT 2 cut(s) 681, 1246
TaqI TCGA 6 cut(s) 33, 87, 448, 508, 695, 1432
TasI AATT 6 cut(s) 178, 485, 542, 1182, 1276, 1302
TatI WGTACW 5 cut(s) 808, 1018, 1052, 1061, 1132
TauI GCSGC 3 cut(s) 8, 19, 305
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 6 cut(s) 205, 364, 832, 1624, 1736, 1818
TseFI GTSAC 1 cut(s) 1676
TseI GCWGC 5 cut(s) 149, 425, 719, 929, 1155
Tsp45I GTSAC 1 cut(s) 1676
TspDTI ATGAA 6 cut(s) 312, 921, 964, 1353, 1559, 1653
TspGWI ACGGA 2 cut(s) 51, 201
TspRI CASTG 6 cut(s) 205, 364, 832, 1624, 1736, 1818
Tth111I GACNNNGTC 2 cut(s) 219, 988
VpaK11BI GGWCC 3 cut(s) 290, 1373, 1723
XceI RCATGY 1 cut(s) 1097
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmiI GTMKAC 2 cut(s) 33, 156
XmnI GAANNNNTTC 3 cut(s) 649, 701, 921
XspI CTAG 5 cut(s) 231, 1059, 1437, 1469, 1517
ZrmI AGTACT 2 cut(s) 1054, 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.