Rh7AG078200

Mediator of RNA polymerase II transcription subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0017665
Physical Location & Seq
Reverse (-)
5579434 .. 5585519
6086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG078200.1

Sequence Viewer

Length: 1866 bp
ATGGCGGCAGAAAAGCGGCTTATGGTGGTCGTCGACGGAACAACAGCTATGGGGCCTTACTGGAAATCCATTCTCTCAGATTACCTCGAAAAGATCATCAGGAACATAAGTGGCCAACCGTCAGCTAACCAGGATGCTTCAGCTGGTGCAGCAGTATACCTGGGCCTGGTTCAGTATAATTCTCACGGACTTGATAACACTGGTTCCTTAACGCGACCAAGTCCTTGGACTAGAAATGTGGATGGGTTTCTTGAAGGGCTCTCGGCTTTACATTTTTCTGGTGGTGGTGGTCCTAATGAAGCCGCCATTGCTGGGGGGCTGGCAGAAGCACTTGTGATGTTTCCGAAGCCTACTCCCACTGGAACTGGAACTGAAACTGAAACTGATCAAGTTCAAGACCATAATGCCAGAGAAAGGCATTGTATTCTTGTGGCTGCAAGCAACCCTGTGTTGTTTCGAACCACCGTTCAGATACCGATAATAAGTAATGGCCAATTTTCTTCTGGTACACAAACTCGATGGACTCTTGCTGATGCTCAAGATGTTGCCAAATTATATGCTGAGTGCTCTGTATCTCTTTCTGTGATCTCACCAAAACAGTTTCCAAAACTCAGAGAGATATACAATGCGGGATATATTGATGATCCTGAAGGAACACCTTCCTTCAGCGATGCGAACAATCCTGACGTACTTCTTCTTTTGTCGAAGGACTTCTTAGAGGCTCATGCTGCCCTTATTCAGTATGTTGAAGTGAACATACTGTCAGTTCGGGAGATAAGTCAGATAACAGACTCTGAGCTTGAATATATTGCTTTAGTACATTTCGGAGACAACAGTGAGTTTGATTATATAGGAGATATGTTGGATCCACCCGAGACAGATAAGCAAGACCATCGTGCAGAGAACATTCTCAATGAAACCGAAGAAATGCTTCTTGCAGCAACACAAGACAGTTTTTCACAAGCACCTTCACCCAGCTGTTTCATTCGTGAGACATTGTCCAGTAGCCTTATTCAGTACCCCGAAGTACAGGCAACGGGATCTGAAGCCGGAGAAAGTAGTACTGCTAGTACTACACAAGCAGAACTCCACTCTCCACAGCATGCGCAACAAATACTTGCAACTCGTACCGTAAGTGGAGTACACAGATCGCAAGGATCTTGCAGGGATCCAAATAGTCTACAAACCACAACTTCTTTAGACACTTTAGCAACAACTTCTGGCAACTCAAGGGGTCCACGAGCATCTTCACGTACTCAAAGATCTCAAATAAGTATGGATCCTAATTTCAAACCAAGAAGAAGTCCAAGAATTGCATCAAGAGCACCTGTGGAACAAGGAGGACATGAAGGTGCTTTTGGTCGGTTTGGGGAACCATCTGGTCCACACACATCAGTATCTGTGAAAAGAAAACCTGCACGAAAAGGATTGAAGCCTCTTCCTGCTAGTATGCAATGGAAAGAAGACATATACGAGCTAGCATGGGAGGGTACGATCTTCTCCAAGCATCAAGAACGGCTTGTTCTAGTCAGTAAGGCAAAGGCGCACAAGATGAAGTCTGCACCAGAGAGCCTTACTACTGGTTGGCCACGACTGCTGAAGATGGGTAATGTTATACCAGAAGCCACTGTTGGCAGGTCATATGAAGGACAAGCCCATGATTTGATCTTTGAGATTACGGGTGACGAGAAAATATATGACCTACTAAATGAGAACCAGCTGTGTATTAGATTCAGCCTGCCTACTCAGTCATTGATAATCAGCCCTGCTGAACACAACCACTTCACTGGGAGAGTGTATGCAGGGGAAGGACCTCTAGTGGAGCAACATCTGGTTGCACAATACAATCAACAAAGGCATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007602 GO:0008150 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009639 GO:0009653 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009909 GO:0009911 GO:0009987 GO:0010017 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010114 GO:0010218 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010927 GO:0016043 GO:0016592 GO:0019219 GO:0019222 GO:0022607 GO:0023052 GO:0030030 GO:0030031 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031974 GO:0031981 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048468 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0048583 GO:0048584 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051606 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071214 GO:0071229 GO:0071310 GO:0071395 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080134 GO:0090558 GO:0090626 GO:0097159 GO:0098542 GO:0104004 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:1905499 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Med25_VWA

Protein Analysis

621

Amino Acids

67.82

Weight (kDa)

5.54

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Med25_VWA PF11265 4 - 235 1.8e-32 Mediator complex subunit 25 von Willebrand factor type A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017665)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g12601 FvH4_5g12610
rosa_chinensis RchiOBHm_Chr7g0184721
rosa_laevigata RLG00000004956
rosa_multiflora Rmu_ssc0000289.1_g000020
rosa_roxburghii Rroxscaffold_3G00269400
rosa_rugosa Rorug06G0464700
rosa_samantha Rh7AG078200 Rh7BG069100 Rh7CG069900 Rh7DG069300
rosa_wichuraiana Rw7G005720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1107
Acc36I ACCTGC 2 cut(s) 1423, 1626
AccI GTMKAC 3 cut(s) 33, 156, 1180
AccII CGCG 1 cut(s) 214
AciI CCGC 4 cut(s) 5, 16, 303, 629
AclWI GGATC 9 cut(s) 638, 860, 873, 1048, 1163, 1165, 1176, 1274, 1287
AcoI YGGCCR 3 cut(s) 112, 490, 1586
AcuI CTGAAG 5 cut(s) 123, 649, 669, 1065, 1619
AfiI CCNNNNNNNGG 3 cut(s) 166, 312, 414
AgsI TTSAA 6 cut(s) 254, 395, 749, 803, 1291, 1432
AjnI CCWGG 3 cut(s) 129, 159, 165
AjuI GAANNNNNNNTTGG 4 cut(s) 1341, 1373, 1614, 1646
AluBI AGCT 7 cut(s) 47, 125, 143, 799, 978, 1477, 1720
AluI AGCT 7 cut(s) 47, 125, 143, 799, 978, 1477, 1720
Alw21I GWGCWC 2 cut(s) 569, 1327
Alw26I GTCTC 3 cut(s) 822, 869, 986
AlwI GGATC 9 cut(s) 638, 860, 873, 1048, 1163, 1165, 1176, 1274, 1287
AlwNI CAGNNNCTG 2 cut(s) 794, 1400
Ama87I CYCGRG 1 cut(s) 872
AoxI GGCC 5 cut(s) 53, 112, 163, 490, 1586
ApeKI GCWGC 4 cut(s) 149, 434, 728, 938
Asp700I GAANNNNTTC 3 cut(s) 658, 710, 930
AspLEI GCGC 2 cut(s) 1108, 1546
AspS9I GGNCC 6 cut(s) 53, 163, 290, 1235, 1382, 1811
AsuHPI GGTGA 3 cut(s) 582, 963, 1694
AsuII TTCGAA 1 cut(s) 457
AsuNHI GCTAGC 1 cut(s) 1477
AvaI CYCGRG 1 cut(s) 872
AvaII GGWCC 4 cut(s) 290, 1235, 1382, 1811
BaeI ACNNNNGTAYC 2 cut(s) 1380, 1413
BalI TGGCCA 3 cut(s) 114, 492, 1588
BamHI GGATCC 3 cut(s) 865, 1168, 1279
BanII GRGCYC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 741, 773
BauI CACGAG 1 cut(s) 1239
BbsI GAAGAC 1 cut(s) 1470
Bbv12I GWGCWC 2 cut(s) 569, 1327
BbvI GCAGC 4 cut(s) 161, 421, 715, 950
BccI CCATC 5 cut(s) 236, 513, 900, 1384, 1597
BceAI ACGGC 1 cut(s) 1532
BcgI CGANNNNNNTGC 2 cut(s) 875, 909
BciT130I CCWGG 3 cut(s) 131, 161, 167
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 3 cut(s) 822, 869, 986
BfaI CTAG 6 cut(s) 231, 1068, 1446, 1478, 1526, 1817
BfuAI ACCTGC 2 cut(s) 1423, 1626
BglII AGATCT 1 cut(s) 1262
BisI GCNGC 7 cut(s) 6, 17, 150, 303, 435, 729, 939
BlsI GCNGC 7 cut(s) 7, 18, 151, 304, 436, 730, 940
BmcAI AGTACT 2 cut(s) 1063, 1072
Bme1390I CCNGG 3 cut(s) 131, 161, 167
Bme18I GGWCC 4 cut(s) 290, 1235, 1382, 1811
BmeT110I CYCGRG 1 cut(s) 872
BmgT120I GGNCC 6 cut(s) 53, 163, 290, 1235, 1382, 1811
BmiI GGNNCC 7 cut(s) 54, 205, 867, 1170, 1236, 1281, 1374
BmrFI CCNGG 3 cut(s) 131, 161, 167
BmrI ACTGGG 1 cut(s) 1797
BmsI GCATC 6 cut(s) 124, 523, 661, 1253, 1325, 1516
BmtI GCTAGC 1 cut(s) 1481
BmuI ACTGGG 1 cut(s) 1797
BpiI GAAGAC 1 cut(s) 1470
Bpu14I TTCGAA 1 cut(s) 457
BpuEI CTTGAG 2 cut(s) 522, 1213
BsaAI YACGTR 1 cut(s) 1253
BsaJI CCNNGG 2 cut(s) 160, 224
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 312, 414
Bse1I ACTGG 7 cut(s) 65, 205, 364, 370, 1002, 1585, 1792
Bse3DI GCAATG 2 cut(s) 306, 1460
BseBI CCWGG 3 cut(s) 131, 161, 167
BseDI CCNNGG 2 cut(s) 160, 224
BseGI GGATG 2 cut(s) 139, 247
BseLI CCNNNNNNNGG 3 cut(s) 166, 312, 414
BseMI GCAATG 2 cut(s) 306, 1460
BseMII CTCAG 5 cut(s) 90, 552, 625, 786, 1760
BseNI ACTGG 7 cut(s) 65, 205, 364, 370, 1002, 1585, 1792
BseXI GCAGC 4 cut(s) 161, 421, 715, 950
BseYI CCCAGC 2 cut(s) 311, 974
BsgI GTGCAG 4 cut(s) 168, 918, 1401, 1545
Bsh1236I CGCG 1 cut(s) 214
BshFI GGCC 5 cut(s) 55, 114, 165, 492, 1588
BsiHKAI GWGCWC 2 cut(s) 569, 1327
BsiHKCI CYCGRG 1 cut(s) 872
BsiSI CCGG 1 cut(s) 1050
BslI CCNNNNNNNGG 3 cut(s) 166, 312, 414
BsmAI GTCTC 3 cut(s) 822, 869, 986
BsnI GGCC 5 cut(s) 55, 114, 165, 492, 1588
BsoBI CYCGRG 1 cut(s) 872
Bsp119I TTCGAA 1 cut(s) 457
Bsp1286I GDGCHC 3 cut(s) 261, 569, 1327
BspACI CCGC 4 cut(s) 5, 16, 303, 629
BspANI GGCC 5 cut(s) 55, 114, 165, 492, 1588
BspCNI CTCAG 5 cut(s) 89, 553, 624, 787, 1759
BspFNI CGCG 1 cut(s) 214
BspLI GGNNCC 7 cut(s) 54, 205, 867, 1170, 1236, 1281, 1374
BspMI ACCTGC 2 cut(s) 1423, 1626
BspOI GCTAGC 1 cut(s) 1481
BspPI GGATC 9 cut(s) 638, 860, 873, 1048, 1163, 1165, 1176, 1274, 1287
BspT104I TTCGAA 1 cut(s) 457
BsrDI GCAATG 2 cut(s) 306, 1460
BsrI ACTGG 7 cut(s) 65, 205, 364, 370, 1002, 1585, 1792
BssECI CCNNGG 2 cut(s) 160, 224
BssNAI GTATAC 1 cut(s) 157
BssSI CACGAG 1 cut(s) 1239
BssT1I CCWWGG 1 cut(s) 224
Bst1107I GTATAC 1 cut(s) 157
Bst2BI CACGAG 1 cut(s) 1239
Bst2UI CCWGG 3 cut(s) 131, 161, 167
Bst4CI ACNGT 8 cut(s) 120, 466, 600, 762, 836, 953, 1132, 1630
Bst6I CTCTTC 1 cut(s) 1443
BstBAI YACGTR 1 cut(s) 1253
BstBI TTCGAA 1 cut(s) 457
BstC8I GCNNGC 5 cut(s) 321, 439, 1104, 1479, 1739
BstDEI CTNAG 6 cut(s) 76, 561, 611, 715, 795, 1746
BstF5I GGATG 2 cut(s) 139, 247
BstFNI CGCG 1 cut(s) 214
BstHHI GCGC 2 cut(s) 1108, 1546
BstMAI GTCTC 3 cut(s) 822, 869, 986
BstMWI GCNNNNNNNGC 5 cut(s) 149, 308, 728, 1322, 1594
BstNI CCWGG 3 cut(s) 131, 161, 167
BstNSI RCATGY 1 cut(s) 1106
BstSCI CCNGG 3 cut(s) 129, 159, 165
BstUI CGCG 1 cut(s) 214
BstV1I GCAGC 4 cut(s) 161, 421, 715, 950
BstV2I GAAGAC 1 cut(s) 1470
BstX2I RGATCY 6 cut(s) 865, 1040, 1157, 1168, 1262, 1279
BstXI CCANNNNNNTGG 2 cut(s) 225, 1787
BstYI RGATCY 6 cut(s) 865, 1040, 1157, 1168, 1262, 1279
BstZ17I GTATAC 1 cut(s) 157
BsuRI GGCC 5 cut(s) 55, 114, 165, 492, 1588
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 2 cut(s) 139, 247
BtsIMutI CAGTG 5 cut(s) 198, 357, 841, 1626, 1785
BveI ACCTGC 2 cut(s) 1423, 1626
Cac8I GCNNGC 5 cut(s) 321, 439, 1104, 1479, 1739
CaiI CAGNNNCTG 2 cut(s) 794, 1400
CfoI GCGC 2 cut(s) 1108, 1546
Cfr13I GGNCC 6 cut(s) 53, 163, 290, 1235, 1382, 1811
CviAII CATG 5 cut(s) 725, 1103, 1346, 1482, 1658
DdeI CTNAG 6 cut(s) 76, 561, 611, 715, 795, 1746
EaeI YGGCCR 3 cut(s) 112, 490, 1586
Eam1104I CTCTTC 1 cut(s) 1443
EarI CTCTTC 1 cut(s) 1443
Eco130I CCWWGG 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 261
Eco47I GGWCC 4 cut(s) 290, 1235, 1382, 1811
Eco57I CTGAAG 5 cut(s) 123, 649, 669, 1065, 1619
Eco88I CYCGRG 1 cut(s) 872
EcoO109I RGGNCCY 2 cut(s) 53, 1811
EcoRII CCWGG 3 cut(s) 129, 159, 165
EcoT14I CCWWGG 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 5 cut(s) 728, 1106, 1349, 1485, 1661
FalI AAGNNNNNCTT 6 cut(s) 698, 730, 915, 947, 1503, 1535
FatI CATG 5 cut(s) 724, 1102, 1345, 1481, 1657
FauI CCCGC 1 cut(s) 622
FauNDI CATATG 1 cut(s) 1642
FbaI TGATCA 1 cut(s) 385
FblI GTMKAC 3 cut(s) 33, 156, 1180
Fnu4HI GCNGC 7 cut(s) 6, 17, 150, 303, 435, 729, 939
FokI GGATG 2 cut(s) 146, 254
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 7 cut(s) 6, 17, 150, 303, 435, 729, 939
FspBI CTAG 6 cut(s) 231, 1068, 1446, 1478, 1526, 1817
FspI TGCGCA 1 cut(s) 1107
GlaI GCGC 2 cut(s) 1107, 1545
GluI GCNGC 7 cut(s) 6, 17, 150, 303, 435, 729, 939
GsaI CCCAGC 2 cut(s) 315, 978
HaeIII GGCC 5 cut(s) 55, 114, 165, 492, 1588
HapII CCGG 1 cut(s) 1050
HhaI GCGC 2 cut(s) 1108, 1546
Hin1II CATG 5 cut(s) 728, 1106, 1349, 1485, 1661
Hin6I GCGC 2 cut(s) 1106, 1544
HinP1I GCGC 2 cut(s) 1106, 1544
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 3 cut(s) 523, 791, 1731
HpaII CCGG 1 cut(s) 1050
HphI GGTGA 3 cut(s) 582, 963, 1694
Hpy166II GTNNAC 8 cut(s) 34, 157, 509, 754, 1144, 1181, 1238, 1385
Hpy188I TCNGA 8 cut(s) 79, 345, 471, 614, 783, 796, 827, 1045
Hpy8I GTNNAC 8 cut(s) 34, 157, 509, 754, 1144, 1181, 1238, 1385
Hpy99I CGWCG 2 cut(s) 35, 38
HpyAV CCTTC 9 cut(s) 248, 644, 669, 673, 700, 978, 1343, 1640, 1802
HpyCH4III ACNGT 8 cut(s) 120, 466, 600, 762, 836, 953, 1132, 1630
HpyCH4IV ACGT 2 cut(s) 687, 1252
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 308, 728, 1322, 1594
HpyF3I CTNAG 6 cut(s) 76, 561, 611, 715, 795, 1746
HpySE526I ACGT 2 cut(s) 687, 1252
Hsp92II CATG 5 cut(s) 728, 1106, 1349, 1485, 1661
HspAI GCGC 2 cut(s) 1106, 1544
Ksp22I TGATCA 1 cut(s) 385
LmnI GCTCC 1 cut(s) 1822
Lsp1109I GCAGC 4 cut(s) 161, 421, 715, 950
LweI GCATC 6 cut(s) 124, 523, 661, 1253, 1325, 1516
MaeI CTAG 6 cut(s) 231, 1068, 1446, 1478, 1526, 1817
MaeII ACGT 2 cut(s) 687, 1252
MaeIII GTNAC 1 cut(s) 1682
MboII GAAGA 9 cut(s) 492, 686, 935, 1239, 1311, 1430, 1475, 1489, 1612
MflI RGATCY 6 cut(s) 865, 1040, 1157, 1168, 1262, 1279
MhlI GDGCHC 3 cut(s) 261, 569, 1327
MlsI TGGCCA 3 cut(s) 114, 492, 1588
MluCI AATT 5 cut(s) 178, 494, 551, 1285, 1311
MluNI TGGCCA 3 cut(s) 114, 492, 1588
MlyI GAGTC 2 cut(s) 517, 785
MmeI TCCRAC 1 cut(s) 843
MnlI CCTC 6 cut(s) 95, 712, 1334, 1446, 1480, 1824
Mox20I TGGCCA 3 cut(s) 114, 492, 1588
MroXI GAANNNNTTC 3 cut(s) 658, 710, 930
MscI TGGCCA 3 cut(s) 114, 492, 1588
MseI TTAA 1 cut(s) 209
MslI CAYNNNNRTG 1 cut(s) 1350
Msp20I TGGCCA 3 cut(s) 114, 492, 1588
MspA1I CMGCKG 3 cut(s) 143, 978, 1720
MspI CCGG 1 cut(s) 1050
MspR9I CCNGG 3 cut(s) 131, 161, 167
MvaI CCWGG 3 cut(s) 131, 161, 167
MvnI CGCG 1 cut(s) 214
MwoI GCNNNNNNNGC 5 cut(s) 149, 308, 728, 1322, 1594
NdeI CATATG 1 cut(s) 1642
NheI GCTAGC 1 cut(s) 1477
NlaIII CATG 5 cut(s) 728, 1106, 1349, 1485, 1661
NlaIV GGNNCC 7 cut(s) 54, 205, 867, 1170, 1236, 1281, 1374
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 1682
NsbI TGCGCA 1 cut(s) 1107
NspI RCATGY 1 cut(s) 1106
NspV TTCGAA 1 cut(s) 457
PaeI GCATGC 1 cut(s) 1106
PdmI GAANNNNTTC 3 cut(s) 658, 710, 930
PfeI GAWTC 1 cut(s) 1731
PflFI GACNNNGTC 2 cut(s) 219, 997
PkrI GCNGC 7 cut(s) 7, 18, 151, 304, 436, 730, 940
PleI GAGTC 2 cut(s) 517, 785
PpsI GAGTC 2 cut(s) 517, 785
Ppu21I YACGTR 1 cut(s) 1253
PpuMI RGGWCCY 1 cut(s) 1811
Psp5II RGGWCCY 1 cut(s) 1811
Psp6I CCWGG 3 cut(s) 129, 159, 165
PspFI CCCAGC 2 cut(s) 311, 974
PspGI CCWGG 3 cut(s) 129, 159, 165
PspN4I GGNNCC 7 cut(s) 54, 205, 867, 1170, 1236, 1281, 1374
PspPI GGNCC 6 cut(s) 53, 163, 290, 1235, 1382, 1811
PspPPI RGGWCCY 1 cut(s) 1811
PstNI CAGNNNCTG 2 cut(s) 794, 1400
PsuI RGATCY 6 cut(s) 865, 1040, 1157, 1168, 1262, 1279
PsyI GACNNNGTC 2 cut(s) 219, 997
PvuII CAGCTG 3 cut(s) 143, 978, 1720
RseI CAYNNNNRTG 1 cut(s) 1350
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 7 cut(s) 6, 17, 150, 303, 435, 729, 939
Sau96I GGNCC 6 cut(s) 53, 163, 290, 1235, 1382, 1811
ScaI AGTACT 2 cut(s) 1063, 1072
SchI GAGTC 2 cut(s) 517, 785
ScrFI CCNGG 3 cut(s) 131, 161, 167
SduI GDGCHC 3 cut(s) 261, 569, 1327
SfaNI GCATC 6 cut(s) 124, 523, 661, 1253, 1325, 1516
SfuI TTCGAA 1 cut(s) 457
SgrDI CGTCGACG 1 cut(s) 32
SinI GGWCC 4 cut(s) 290, 1235, 1382, 1811
SmiMI CAYNNNNRTG 1 cut(s) 1350
SmlI CTYRAG 2 cut(s) 537, 1228
SmoI CTYRAG 2 cut(s) 537, 1228
SphI GCATGC 1 cut(s) 1106
Sse9I AATT 5 cut(s) 178, 494, 551, 1285, 1311
SsiI CCGC 4 cut(s) 5, 16, 303, 629
SspMI CTAG 6 cut(s) 231, 1068, 1446, 1478, 1526, 1817
StyD4I CCNGG 3 cut(s) 129, 159, 165
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 8 cut(s) 120, 466, 600, 762, 836, 953, 1132, 1630
TaiI ACGT 2 cut(s) 690, 1255
TaqI TCGA 5 cut(s) 33, 87, 457, 517, 704
TasI AATT 5 cut(s) 178, 494, 551, 1285, 1311
TatI WGTACW 5 cut(s) 817, 1027, 1061, 1070, 1141
TauI GCSGC 3 cut(s) 8, 19, 305
TfiI GAWTC 1 cut(s) 1731
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TscAI CASTG 5 cut(s) 205, 364, 841, 1633, 1792
TseFI GTSAC 1 cut(s) 1682
TseI GCWGC 4 cut(s) 149, 434, 728, 938
Tsp45I GTSAC 1 cut(s) 1682
TspDTI ATGAA 6 cut(s) 312, 930, 973, 1362, 1568, 1659
TspGWI ACGGA 2 cut(s) 51, 201
TspRI CASTG 5 cut(s) 205, 364, 841, 1633, 1792
Tth111I GACNNNGTC 2 cut(s) 219, 997
VpaK11BI GGWCC 4 cut(s) 290, 1235, 1382, 1811
XceI RCATGY 1 cut(s) 1106
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XmiI GTMKAC 3 cut(s) 33, 156, 1180
XmnI GAANNNNTTC 3 cut(s) 658, 710, 930
XspI CTAG 6 cut(s) 231, 1068, 1446, 1478, 1526, 1817
ZrmI AGTACT 2 cut(s) 1063, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.