Rroxscaffold_3G00271360

Plant protein of unknown function (DUF863)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0003065
Physical Location & Seq
Reverse (-)
63712249 .. 63715614
3366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271360.1

Sequence Viewer

Length: 654 bp
ATGGAAGACAAAAGAGAACTAATGGATGATATAACAAGGAATGAATTAGATAAACATAATCTGGGCACCGAGGTTTCAAGGCGGACTACTTCTTTGTCTCAGACTTCTCTTGTCTGTGCTCAAAAGACATTCAACATCCCTGCATGCAGTCAAGTATCTATTTCAGGTGCTGAAAATATCCAGTCACCTTCATGTTTTCTTCAAGGGAGGAACATACGGGCATGCTCTTATCCTGCTCAAACTGAAGGCCATTCAGGAGACCGTGAATTTTTGAAATCCAAATGCAAGAAACCTCGGAAGAACTTGGACCTTCGACTTCCAGCTGATACAATATATATTGATAGTGAAGAAGAGGAATTGTTAGAAGCCGGAAAGGTTTCTGAAGCAGCTGAGGTATCAAGTTATCCTACTAAGAGAATTCCCGAGGTTGTGTGTAATGTTGATGCAACTAATGGATTCAACTCTGTTTCCAATTATGCCTCAAGTGCTGCATCATCAGAAAAAGGTTGGGTTGACTTAAATTATCTGTATAAGCTACAGGAAAAAACAGCTCCTGCATCTGATAGTTTTGAGCGGCCCCACTGCCGTCGAAGCTTACTCAAATATTCTACTGCAAGGCACAGAAAGCAAACTGGAGTGGTTGTCATCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF863

Protein Analysis

217

Amino Acids

24.2

Weight (kDa)

7.57

Isoelectric Point (pI)

63.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF863 PF05904 49 - 194 1.4e-11 Plant protein of unknown function (DUF863)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 652
AccB1I GGYRCC 1 cut(s) 65
AccBSI CCGCTC 1 cut(s) 574
AciI CCGC 2 cut(s) 82, 574
AcsI RAATTY 2 cut(s) 266, 417
AcuI CTGAAG 2 cut(s) 264, 402
AgsI TTSAA 5 cut(s) 78, 133, 203, 274, 460
AluBI AGCT 5 cut(s) 323, 389, 535, 551, 594
AluI AGCT 5 cut(s) 323, 389, 535, 551, 594
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 2 cut(s) 102, 252
AlwNI CAGNNNCTG 2 cut(s) 170, 554
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 2 cut(s) 247, 575
ApeKI GCWGC 2 cut(s) 386, 488
ApoI RAATTY 2 cut(s) 266, 417
ArsI GACNNNNNNTTYG 2 cut(s) 76, 108
Asp700I GAANNNNTTC 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 307, 576
AsuHPI GGTGA 1 cut(s) 177
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 68
BanI GGYRCC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 121
BbvCI CCTCAGC 1 cut(s) 390
BbvI GCAGC 2 cut(s) 398, 475
BceAI ACGGC 1 cut(s) 570
BcoDI GTCTC 2 cut(s) 102, 252
BfmI CTRYAG 1 cut(s) 536
BisI GCNGC 3 cut(s) 387, 489, 575
BlsI GCNGC 3 cut(s) 388, 490, 576
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 2 cut(s) 307, 576
BmiI GGNNCC 2 cut(s) 67, 578
BmsI GCATC 3 cut(s) 433, 500, 566
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 654
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 466
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 69, 293, 423
BsaXI ACNNNNNCTCC 1 cut(s) 627
Bse1I ACTGG 2 cut(s) 181, 637
BseDI CCNNGG 3 cut(s) 69, 293, 423
BseGI GGATG 2 cut(s) 31, 135
BseMII CTCAG 2 cut(s) 113, 381
BseNI ACTGG 2 cut(s) 181, 637
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 2 cut(s) 398, 475
BshFI GGCC 2 cut(s) 249, 577
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 1 cut(s) 369
BsmAI GTCTC 2 cut(s) 102, 252
BsnI GGCC 2 cut(s) 249, 577
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 68, 121
BspACI CCGC 2 cut(s) 82, 574
BspANI GGCC 2 cut(s) 249, 577
BspCNI CTCAG 2 cut(s) 112, 382
BspLI GGNNCC 2 cut(s) 67, 578
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 252
BsrBI CCGCTC 1 cut(s) 574
BsrI ACTGG 2 cut(s) 181, 637
BssECI CCNNGG 3 cut(s) 69, 293, 423
Bst4CI ACNGT 1 cut(s) 263
Bst6I CTCTTC 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 145, 223
BstDEI CTNAG 3 cut(s) 99, 390, 411
BstF5I GGATG 2 cut(s) 31, 135
BstMAI GTCTC 2 cut(s) 102, 252
BstMWI GCNNNNNNNGC 3 cut(s) 485, 591, 625
BstNSI RCATGY 2 cut(s) 147, 225
BstSFI CTRYAG 1 cut(s) 536
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 398, 475
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 2 cut(s) 249, 577
BtsCI GGATG 2 cut(s) 31, 135
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 1 cut(s) 580
Cac8I GCNNGC 2 cut(s) 145, 223
CaiI CAGNNNCTG 2 cut(s) 170, 554
Cfr13I GGNCC 2 cut(s) 307, 576
CviAII CATG 3 cut(s) 144, 192, 222
CviJI RGCY 8 cut(s) 249, 323, 368, 389, 535, 551, 577, 594
CviKI_1 RGCY 8 cut(s) 249, 323, 368, 389, 535, 551, 577, 594
DdeI CTNAG 3 cut(s) 99, 390, 411
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
EciI GGCGGA 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 264, 402
Eco88I CYCGRG 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 417
FaeI CATG 3 cut(s) 147, 195, 225
FatI CATG 3 cut(s) 143, 191, 221
Fnu4HI GCNGC 3 cut(s) 387, 489, 575
FokI GGATG 2 cut(s) 38, 122
Fsp4HI GCNGC 3 cut(s) 387, 489, 575
GluI GCNGC 3 cut(s) 387, 489, 575
GsuI CTGGAG 1 cut(s) 654
HaeIII GGCC 2 cut(s) 249, 577
HapII CCGG 1 cut(s) 369
Hin1II CATG 3 cut(s) 147, 195, 225
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 592
HinfI GANTC 1 cut(s) 456
HpaII CCGG 1 cut(s) 369
HphI GGTGA 1 cut(s) 177
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 5 cut(s) 102, 297, 382, 499, 562
Hpy188III TCNNGA 2 cut(s) 255, 422
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 1 cut(s) 591
HpyAV CCTTC 3 cut(s) 198, 239, 320
HpyCH4III ACNGT 1 cut(s) 263
HpyCH4V TGCA 7 cut(s) 143, 147, 285, 446, 491, 557, 614
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 591, 625
HpyF3I CTNAG 3 cut(s) 99, 390, 411
Hsp92II CATG 3 cut(s) 147, 195, 225
LmnI GCTCC 1 cut(s) 556
Lsp1109I GCAGC 2 cut(s) 398, 475
LweI GCATC 3 cut(s) 433, 500, 566
MaeIII GTNAC 1 cut(s) 183
MbiI CCGCTC 1 cut(s) 574
MboII GAAGA 5 cut(s) 17, 191, 310, 359, 362
MhlI GDGCHC 2 cut(s) 68, 121
MluCI AATT 6 cut(s) 44, 266, 356, 417, 472, 520
MnlI CCTC 7 cut(s) 64, 201, 303, 346, 385, 418, 490
MroXI GAANNNNTTC 1 cut(s) 376
MseI TTAA 1 cut(s) 518
MslI CAYNNNNRTG 1 cut(s) 190
MspA1I CMGCKG 2 cut(s) 323, 389
MspI CCGG 1 cut(s) 369
MwoI GCNNNNNNNGC 3 cut(s) 485, 591, 625
NlaIII CATG 3 cut(s) 147, 195, 225
NlaIV GGNNCC 2 cut(s) 67, 578
NmuCI GTSAC 1 cut(s) 183
NspI RCATGY 2 cut(s) 147, 225
PaeI GCATGC 2 cut(s) 147, 225
PdmI GAANNNNTTC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 456
PkrI GCNGC 3 cut(s) 388, 490, 576
PsiI TTATAA 1 cut(s) 652
PspN4I GGNNCC 2 cut(s) 67, 578
PspPI GGNCC 2 cut(s) 307, 576
PstNI CAGNNNCTG 2 cut(s) 170, 554
PvuII CAGCTG 2 cut(s) 323, 389
RseI CAYNNNNRTG 1 cut(s) 190
SaqAI TTAA 1 cut(s) 518
SatI GCNGC 3 cut(s) 387, 489, 575
Sau96I GGNCC 2 cut(s) 307, 576
SduI GDGCHC 2 cut(s) 68, 121
SfaNI GCATC 3 cut(s) 433, 500, 566
SfcI CTRYAG 1 cut(s) 536
SinI GGWCC 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
SphI GCATGC 2 cut(s) 147, 225
Sse9I AATT 6 cut(s) 44, 266, 356, 417, 472, 520
SsiI CCGC 2 cut(s) 82, 574
SspI AATATT 1 cut(s) 605
TaaI ACNGT 1 cut(s) 263
TaqI TCGA 2 cut(s) 313, 589
TasI AATT 6 cut(s) 44, 266, 356, 417, 472, 520
TauI GCSGC 1 cut(s) 577
TfiI GAWTC 1 cut(s) 456
Tru1I TTAA 1 cut(s) 518
Tru9I TTAA 1 cut(s) 518
TscAI CASTG 1 cut(s) 587
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 2 cut(s) 386, 488
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 2 cut(s) 57, 180
TspRI CASTG 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 307
XapI RAATTY 2 cut(s) 266, 417
XceI RCATGY 2 cut(s) 147, 225
XmnI GAANNNNTTC 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.