Rorug06G0446800

Plant protein of unknown function (DUF863)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003065
Physical Location & Seq
Reverse (-)
57755107 .. 57755907
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0446800.1

Sequence Viewer

Length: 801 bp
ATGACTGAGAAGGTGGATAATCTTCTTGCTGAAAATCTCAGGACTATAGCGCATCCTGCTCCTCACCCAGAGGTGGAATTCCAACCCGGAACCAACTTCCATGAAGGTGCCAGCTCCTCTGGAACATCAAACCATGATGGACAGCCACCTGCATCTGTAGGAAAGACAATCAATTTTGATTCCAGAAGATCAACCATTAGAGATGTGATGGAAGCTCTCAAGGGGAATCAATTCAATCCGATTATCATATGCGGCATGGGTGGTATCGGGAAGACAACATTGATGGGGCAAGTTTTTGAGAAAGCAAAGGAAGAAGGTCTGTTCGATGAGTATACAAAGGCAACCGTTAAGGAATCTCTTGACAAAGCTCCTGACGTGATTCAGATTCAAGGTGAACTAGCAGAATATCTAGGTCTGCCACTTGAAGGAAAAGACAGTGGTCCAAGAGCAAATAAGCTACGTCAGAGATTATCTCAAGGCAGCAAGAAGATCCTTGTAATGTTAGACAATGTTTCCACAACAAACCCAGACTTTTTGTGGGACATTGGGATTCCCCCTAGTTGTAAACTTTTGGTGACATCAAGACAACAAGATCTATTCAAGGACATGGACACAAGAAAGAATTTCCCCATTCATGGTTTGCCGGATCCTGATGCCTGGAGTCTGTTTAAGAAGACAGCAGGAAGTTCTATCGAATCTGATCGCGAGTTAGAAGTTGTAGCAAAAAAGGTTTTGACTTTTGAAGGAATGTGCTGGGTTGCCCATTGCAATTTCAACTGTTGGAACAGCACTAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF863

Protein Analysis

266

Amino Acids

29.45

Weight (kDa)

6.1

Isoelectric Point (pI)

30.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 64 - 228 4.2e-19 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 157
Acc36I ACCTGC 1 cut(s) 157
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 332
AccII CGCG 1 cut(s) 705
AciI CCGC 1 cut(s) 252
AclWI GGATC 3 cut(s) 484, 641, 654
AcsI RAATTY 2 cut(s) 77, 622
AfiI CCNNNNNNNGG 3 cut(s) 73, 425, 635
AgsI TTSAA 6 cut(s) 235, 389, 425, 601, 743, 775
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 1 cut(s) 656
AluBI AGCT 4 cut(s) 114, 215, 368, 457
AluI AGCT 4 cut(s) 114, 215, 368, 457
AlwI GGATC 3 cut(s) 484, 641, 654
ApeKI GCWGC 1 cut(s) 480
ApoI RAATTY 2 cut(s) 77, 622
Asp700I GAANNNNTTC 1 cut(s) 230
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 3 cut(s) 56, 404, 586
AvaII GGWCC 1 cut(s) 440
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 107
BbsI GAAGAC 2 cut(s) 278, 680
BbvI GCAGC 1 cut(s) 492
BccI CCATC 3 cut(s) 131, 202, 277
BciT130I CCWGG 1 cut(s) 658
BcnI CCSGG 1 cut(s) 87
BfaI CTAG 3 cut(s) 398, 410, 558
BfmI CTRYAG 2 cut(s) 45, 156
BfuAI ACCTGC 1 cut(s) 157
BglII AGATCT 1 cut(s) 592
BisI GCNGC 2 cut(s) 253, 481
BlsI GCNGC 2 cut(s) 254, 482
Bme1390I CCNGG 2 cut(s) 87, 658
Bme18I GGWCC 1 cut(s) 440
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 3 cut(s) 91, 109, 648
BmrFI CCNGG 2 cut(s) 87, 658
BmsI GCATC 3 cut(s) 61, 161, 643
BoxI GACNNNNGTC 1 cut(s) 438
BpiI GAAGAC 2 cut(s) 278, 680
BplI GAGNNNNNCTC 2 cut(s) 457, 489
BpmI CTGGAG 1 cut(s) 679
BpuEI CTTGAG 2 cut(s) 203, 459
BpuMI CCSGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 425, 635
Bse3DI GCAATG 1 cut(s) 763
BseBI CCWGG 1 cut(s) 658
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 3 cut(s) 73, 425, 635
BseMI GCAATG 1 cut(s) 763
BseMII CTCAG 1 cut(s) 52
BseRI GAGGAG 2 cut(s) 51, 106
BseXI GCAGC 1 cut(s) 492
BseYI CCCAGC 1 cut(s) 753
Bsh1236I CGCG 1 cut(s) 705
BshNI GGYRCC 1 cut(s) 107
BsiSI CCGG 2 cut(s) 87, 644
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 3 cut(s) 73, 425, 635
BsmFI GGGAC 1 cut(s) 554
Bsp143I GATC 5 cut(s) 188, 489, 592, 646, 700
Bsp68I TCGCGA 1 cut(s) 705
BspACI CCGC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 51
BspFNI CGCG 1 cut(s) 705
BspLI GGNNCC 3 cut(s) 91, 109, 648
BspMI ACCTGC 1 cut(s) 157
BspPI GGATC 3 cut(s) 484, 641, 654
BspT107I GGYRCC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 763
BssMI GATC 5 cut(s) 188, 489, 592, 646, 700
BssNAI GTATAC 1 cut(s) 333
Bst1107I GTATAC 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 658
Bst4CI ACNGT 3 cut(s) 346, 437, 779
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 6, 38
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 705
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 5 cut(s) 191, 492, 595, 649, 703
BstMBI GATC 5 cut(s) 188, 489, 592, 646, 700
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 658
BstPAI GACNNNNGTC 1 cut(s) 438
BstSCI CCNGG 2 cut(s) 85, 656
BstSFI CTRYAG 2 cut(s) 45, 156
BstUI CGCG 1 cut(s) 705
BstV1I GCAGC 1 cut(s) 492
BstV2I GAAGAC 2 cut(s) 278, 680
BstX2I RGATCY 3 cut(s) 489, 592, 646
BstYI RGATCY 3 cut(s) 489, 592, 646
BstZ17I GTATAC 1 cut(s) 333
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 442
BtuMI TCGCGA 1 cut(s) 705
BveI ACCTGC 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 440
CviAII CATG 5 cut(s) 101, 134, 256, 607, 635
CviJI RGCY 5 cut(s) 114, 145, 215, 368, 457
CviKI_1 RGCY 5 cut(s) 114, 145, 215, 368, 457
DdeI CTNAG 2 cut(s) 6, 38
DpnI GATC 5 cut(s) 190, 491, 594, 648, 702
DpnII GATC 5 cut(s) 188, 489, 592, 646, 700
Eco47I GGWCC 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 656
FaeI CATG 5 cut(s) 104, 137, 259, 610, 638
FaiI YATR 9 cut(s) 47, 102, 135, 248, 250, 257, 333, 608, 636
FaqI GGGAC 1 cut(s) 554
FatI CATG 5 cut(s) 100, 133, 255, 606, 634
FauNDI CATATG 1 cut(s) 248
FblI GTMKAC 1 cut(s) 332
Fnu4HI GCNGC 2 cut(s) 253, 481
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 253, 481
FspBI CTAG 3 cut(s) 398, 410, 558
GlaI GCGC 1 cut(s) 51
GluI GCNGC 2 cut(s) 253, 481
GsaI CCCAGC 1 cut(s) 757
GsuI CTGGAG 1 cut(s) 679
HapII CCGG 2 cut(s) 87, 644
HhaI GCGC 1 cut(s) 52
Hin1II CATG 5 cut(s) 104, 137, 259, 610, 638
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HinfI GANTC 8 cut(s) 179, 226, 353, 379, 385, 550, 661, 695
HpaII CCGG 2 cut(s) 87, 644
HphI GGTGA 3 cut(s) 56, 404, 586
Hpy166II GTNNAC 3 cut(s) 333, 395, 566
Hpy188I TCNGA 4 cut(s) 240, 384, 465, 700
Hpy188III TCNNGA 9 cut(s) 40, 120, 183, 268, 359, 371, 582, 650, 704
Hpy8I GTNNAC 3 cut(s) 333, 395, 566
HpyAV CCTTC 5 cut(s) 4, 98, 308, 419, 737
HpyCH4III ACNGT 3 cut(s) 346, 437, 779
HpyCH4IV ACGT 2 cut(s) 375, 460
HpyCH4V TGCA 2 cut(s) 152, 768
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 2 cut(s) 6, 38
HpySE526I ACGT 2 cut(s) 375, 460
Hsp92II CATG 5 cut(s) 104, 137, 259, 610, 638
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 5 cut(s) 188, 489, 592, 646, 700
LmnI GCTCC 3 cut(s) 64, 119, 373
Lsp1109I GCAGC 1 cut(s) 492
LweI GCATC 3 cut(s) 61, 161, 643
MaeI CTAG 3 cut(s) 398, 410, 558
MaeII ACGT 2 cut(s) 375, 460
MaeIII GTNAC 1 cut(s) 574
MalI GATC 5 cut(s) 190, 491, 594, 648, 702
MboI GATC 5 cut(s) 188, 489, 592, 646, 700
MboII GAAGA 6 cut(s) 14, 198, 283, 323, 499, 685
MflI RGATCY 3 cut(s) 489, 592, 646
MluCI AATT 5 cut(s) 77, 172, 230, 622, 769
MlyI GAGTC 1 cut(s) 670
MmeI TCCRAC 2 cut(s) 106, 761
MnlI CCTC 3 cut(s) 64, 72, 127
MroXI GAANNNNTTC 1 cut(s) 230
MseI TTAA 2 cut(s) 348, 669
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 2 cut(s) 87, 644
MspR9I CCNGG 2 cut(s) 87, 658
MvaI CCWGG 1 cut(s) 658
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 1 cut(s) 56
NciI CCSGG 1 cut(s) 87
NdeI CATATG 1 cut(s) 248
NdeII GATC 5 cut(s) 188, 489, 592, 646, 700
NlaIII CATG 5 cut(s) 104, 137, 259, 610, 638
NlaIV GGNNCC 3 cut(s) 91, 109, 648
NmuCI GTSAC 1 cut(s) 574
NruI TCGCGA 1 cut(s) 705
PaqCI CACCTGC 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 230
PfeI GAWTC 7 cut(s) 179, 226, 353, 379, 385, 550, 695
PkrI GCNGC 2 cut(s) 254, 482
PleI GAGTC 1 cut(s) 669
PpsI GAGTC 1 cut(s) 669
PshAI GACNNNNGTC 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 656
PspFI CCCAGC 1 cut(s) 753
PspGI CCWGG 1 cut(s) 656
PspN4I GGNNCC 3 cut(s) 91, 109, 648
PspPI GGNCC 1 cut(s) 440
PsuI RGATCY 3 cut(s) 489, 592, 646
RruI TCGCGA 1 cut(s) 705
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 2 cut(s) 348, 669
SatI GCNGC 2 cut(s) 253, 481
Sau3AI GATC 5 cut(s) 188, 489, 592, 646, 700
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 1 cut(s) 670
ScrFI CCNGG 2 cut(s) 87, 658
SfaNI GCATC 3 cut(s) 61, 161, 643
SfcI CTRYAG 2 cut(s) 45, 156
SinI GGWCC 1 cut(s) 440
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 2 cut(s) 218, 474
SmoI CTYRAG 2 cut(s) 218, 474
Sse9I AATT 5 cut(s) 77, 172, 230, 622, 769
SsiI CCGC 1 cut(s) 252
SspMI CTAG 3 cut(s) 398, 410, 558
StyD4I CCNGG 2 cut(s) 85, 656
TaaI ACNGT 3 cut(s) 346, 437, 779
TaiI ACGT 2 cut(s) 378, 463
TaqI TCGA 2 cut(s) 324, 693
TasI AATT 5 cut(s) 77, 172, 230, 622, 769
TauI GCSGC 1 cut(s) 255
TfiI GAWTC 7 cut(s) 179, 226, 353, 379, 385, 550, 695
Tru1I TTAA 2 cut(s) 348, 669
Tru9I TTAA 2 cut(s) 348, 669
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 1 cut(s) 480
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 2 cut(s) 117, 623
TspRI CASTG 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 2 cut(s) 77, 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmiI GTMKAC 1 cut(s) 332
XmnI GAANNNNTTC 1 cut(s) 230
XspI CTAG 3 cut(s) 398, 410, 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.