Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012420

Physical Location & Seq

Genomic Coordinates Reverse (-)

5975843 .. 5978481

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCAAAGCCAATTCGGATTTCACACCCCCAAATCCGTTGCAGATGCCAAGCCCAAACCCCAAGGCCCAAGCTTTCTCATCCTCCTCTCCTCCGCAATGCCGTCGCCGTCGTCTCTCCCCAAACCCCCGACCTCGCCGCCGCCGCCGCCTCCGACCCCCTCCACGAGGCCGAGGACCGCCTCCGCGACGCCATTGAGGAGCTCCAGCGCACCGCCGCAGCCCGTGGCTCCCAGCACCACCCCCCCCCCCCTGCGACCACGCCAACGACGAGTCGTGCGTCGCCCACGCCATTGGAACCTCTGCCAGAGCTTTCTCCTCTCCTGTGGCGTCCGAGTTCGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.36

Weight (kDa)

8.89

Isoelectric Point (pI)

61.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012420)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51150
fragaria_vesca	FvH4_7g26640 FvH4_7g26640 FvH4_7g26640
malus_domestica	MD07G1241200.v1.1
prunus_persica	Prupe.2G270300_v2.0.a1
pyrus_communis	pycom07g21770
rosa_chinensis	RchiOBHm_Chr1g0373261
rosa_laevigata	RLG00000026833
rosa_multiflora	Rmu_co8510213.1_g000001 Rmu_sc0031315.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284300 Rroxscaffold_4G00284340
rosa_rugosa	Rorug01G0376800
rosa_samantha	Rh1AG385500 Rh1BG349700 Rh1CG362900 Rh1DG380400
rosa_wichuraiana	Rw1G034940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	186
AciI	CCGC	9 cut(s)	94, 138, 141, 144, 147, 178, 184, 213, 216
AcyI	GRCGYC	2 cut(s)	189, 328
AfiI	CCNNNNNNNGG	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
AluBI	AGCT	3 cut(s)	73, 202, 310
AluI	AGCT	3 cut(s)	73, 202, 310
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	1 cut(s)	118
AoxI	GGCC	2 cut(s)	65, 168
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	2 cut(s)	66, 175
AvaII	GGWCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	164
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	86, 92
BcgI	CGANNNNNNTGC	2 cut(s)	85, 119
BcoDI	GTCTC	1 cut(s)	118
BisI	GCNGC	6 cut(s)	138, 141, 144, 147, 216, 219
BlsI	GCNGC	6 cut(s)	139, 142, 145, 148, 217, 220
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	66, 175
BmiI	GGNNCC	2 cut(s)	229, 297
BmsI	GCATC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	188
BsaHI	GRCGYC	2 cut(s)	189, 328
BsaJI	CCNNGG	3 cut(s)	62, 171, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	103
BseDI	CCNNGG	3 cut(s)	62, 171, 223
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	103
BseRI	GAGGAG	4 cut(s)	75, 80, 212, 306
BseXI	GCAGC	1 cut(s)	230
BseYI	CCCAGC	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	67, 170
BsiHKAI	GWGCWC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	118
BsmBI	CGTCTC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	67, 170
Bsp1286I	GDGCHC	1 cut(s)	204
BspACI	CCGC	9 cut(s)	94, 138, 141, 144, 147, 178, 184, 213, 216
BspANI	GGCC	2 cut(s)	67, 170
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	229, 297
BsrDI	GCAATG	1 cut(s)	103
BssECI	CCNNGG	3 cut(s)	62, 171, 223
BssNI	GRCGYC	2 cut(s)	189, 328
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	62
Bst2BI	CACGAG	1 cut(s)	164
BstACI	GRCGYC	2 cut(s)	189, 328
BstDSI	CCRYGG	1 cut(s)	223
BstENI	CCTNNNNNAGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 146
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	67, 170
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	79
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	66, 175
CseI	GACGC	3 cut(s)	197, 267, 317
CviJI	RGCY	9 cut(s)	10, 53, 67, 73, 170, 202, 221, 228, 310
CviKI_1	RGCY	9 cut(s)	10, 53, 67, 73, 170, 202, 221, 228, 310
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	62
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	164
EcoT14I	CCWWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	62
Esp3I	CGTCTC	1 cut(s)	118
Fnu4HI	GCNGC	6 cut(s)	138, 141, 144, 147, 216, 219
FokI	GGATG	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	6 cut(s)	138, 141, 144, 147, 216, 219
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	6 cut(s)	138, 141, 144, 147, 216, 219
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	67, 170
HgaI	GACGC	3 cut(s)	197, 267, 317
HhaI	GCGC	1 cut(s)	210
Hin1I	GRCGYC	2 cut(s)	189, 328
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	18, 154, 333, 340
Hpy99I	CGWCG	5 cut(s)	107, 113, 191, 271, 283
HpyCH4V	TGCA	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 146
Hsp92I	GRCGYC	2 cut(s)	189, 328
HspAI	GCGC	1 cut(s)	208
LmnI	GCTCC	3 cut(s)	199, 207, 233
LpnPI	CCDG	5 cut(s)	218, 245, 264, 318, 335
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	280
MmeI	TCCRAC	1 cut(s)	177
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	143, 146
NlaIV	GGNNCC	2 cut(s)	229, 297
NmeAIII	GCCGAG	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	2 cut(s)	266, 275
PkrI	GCNGC	6 cut(s)	139, 142, 145, 148, 217, 220
PleI	GAGTC	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	231
PspN4I	GGNNCC	2 cut(s)	229, 297
PspPI	GGNCC	2 cut(s)	66, 175
SacI	GAGCTC	1 cut(s)	204
SatI	GCNGC	6 cut(s)	138, 141, 144, 147, 216, 219
Sau96I	GGNCC	2 cut(s)	66, 175
SchI	GAGTC	1 cut(s)	280
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	5 cut(s)	75, 135, 204, 301, 312
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	9 cut(s)	94, 138, 141, 144, 147, 178, 184, 213, 216
SstI	GAGCTC	1 cut(s)	204
StyI	CCWWGG	1 cut(s)	62
TasI	AATT	1 cut(s)	12
TauI	GCSGC	5 cut(s)	140, 143, 146, 149, 218
TseI	GCWGC	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	175
XagI	CCTNNNNNAGG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.