Rh1BG349700

N-terminal cysteine-rich region of Transmembrane protein 135

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012420
Physical Location & Seq
Forward (+)
48274458 .. 48276354
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG349700.1

Sequence Viewer

Length: 906 bp
ATGTACGCCTTTGTAATGCGTCCTGAGAGCTTGCCTAAATCTTATCATGAATTTATCCAGAAGACTGGTCCTGTTGCTCAGCCTGTATACAAGGCCGTAAGGGAGTGTTGTAGAGGATACCCAGTGGATATTGCCTCACTGGCCGATTACTTGGCTGAGAAAGGGAGAAGCGATATGAAGTTGGAAGAGTTTCCATCCATTTTGCCTTGTTCTGTTATTCATCCCCACACAAATTCTTGTTTAGTGCACAATGCAACTGCAACATCAGCTACATTTAGGAAAACATTTCCGCTTTACTTCTCTTTGACATTTGTACCATTTGTCGTTCTTCGCCTACAGAAGTTCCTGGTGGCCCCTGCTCGCACCTTTATGTTTGCTGTTAAAGATTCTGTTCGCTCAACAGCATTCTTGTCTCCTTTCGTTGGAATCTTTCAGGGTGTGATATGTTTGCACAGAAAAGTTGCATCAAAAGACAACAAGCTTGTATATTGGATTGCTGGTGGTCTATCTGCTCTTTCAGTTCTACTGGAGAAAAAAGCTAGGCGTGGTGAACTTGCTCTATATGTTCTTCCACGGGCAGGAGAGTCTTTGTGGTATATTTTAGTAAACCGTCACCTGCTTCCAGATATTAAGAATGCTGAGGTGTTCTTGTTCTGTTTGTGTATGGGAGGAATTATGTACTACTTGGAACATGAGCCAGACACTATGGCTCCATTCCTGAGGGGTCTGATTCGCCGCTTTCTTGCTAGCCGAATTAGTAATCCAGTCAATTCGTCTAATAGGAATGCTTCCTACACATATTTGCAAACTCTTGATGCCATGAAGAAGCCAAAGCTATTAGAGAATGATGGTTCTGAAGCACCTTCTGAGAAGAAATACAATCTGGAATCAATACCAGGGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMEM135_C_rich Tim17

Protein Analysis

301

Amino Acids

33.96

Weight (kDa)

9.36

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM135_C_rich PF15982 72 - 200 4.9e-09 N-terminal cysteine-rich region of Transmembrane protein 135
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012420)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51150
fragaria_vesca FvH4_7g26640 FvH4_7g26640 FvH4_7g26640
malus_domestica MD07G1241200.v1.1
prunus_persica Prupe.2G270300_v2.0.a1
pyrus_communis pycom07g21770
rosa_chinensis RchiOBHm_Chr1g0373261
rosa_laevigata RLG00000026833
rosa_multiflora Rmu_co8510213.1_g000001 Rmu_sc0031315.1_g000001
rosa_roxburghii Rroxscaffold_4G00284300 Rroxscaffold_4G00284340
rosa_rugosa Rorug01G0376800
rosa_samantha Rh1AG385500 Rh1BG349700 Rh1CG362900 Rh1DG380400
rosa_wichuraiana Rw1G034940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 624
Acc36I ACCTGC 1 cut(s) 624
AccI GTMKAC 1 cut(s) 87
AciI CCGC 2 cut(s) 290, 736
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 2 cut(s) 50, 232
AcuI CTGAAG 1 cut(s) 876
AfaI GTAC 3 cut(s) 5, 315, 680
AfiI CCNNNNNNNGG 2 cut(s) 422, 578
AjnI CCWGG 2 cut(s) 345, 895
AluBI AGCT 5 cut(s) 30, 269, 481, 539, 835
AluI AGCT 5 cut(s) 30, 269, 481, 539, 835
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 417
Alw44I GTGCAC 1 cut(s) 245
AoxI GGCC 3 cut(s) 93, 141, 351
ApaLI GTGCAC 1 cut(s) 245
ApoI RAATTY 2 cut(s) 50, 232
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 68, 352
AsuHPI GGTGA 2 cut(s) 560, 605
AsuNHI GCTAGC 1 cut(s) 746
AvaII GGWCC 1 cut(s) 68
AxyI CCTNAGG 1 cut(s) 719
BaeGI GKGCMC 1 cut(s) 249
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BbsI GAAGAC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 639
BccI CCATC 2 cut(s) 202, 842
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 2 cut(s) 347, 897
BciVI GTATCC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 2 cut(s) 540, 747
BfmI CTRYAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 624
BfuI GTATCC 1 cut(s) 110
BglI GCCNNNNNGGC 1 cut(s) 140
BisI GCNGC 1 cut(s) 736
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 737
Bme1390I CCNGG 2 cut(s) 347, 897
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 68, 352
BmiI GGNNCC 2 cut(s) 354, 711
BmrFI CCNGG 2 cut(s) 347, 897
BmrI ACTGGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 473, 805
BmtI GCTAGC 1 cut(s) 750
BmuI ACTGGG 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 548
Bpu10I CCTNAGC 1 cut(s) 639
Bpu1102I GCTNAGC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 572, 896
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bsc4I CCNNNNNNNGG 2 cut(s) 422, 578
Bse1I ACTGG 5 cut(s) 70, 122, 144, 531, 764
Bse21I CCTNAGG 1 cut(s) 719
BseBI CCWGG 2 cut(s) 347, 897
BseDI CCNNGG 2 cut(s) 572, 896
BseGI GGATG 2 cut(s) 194, 220
BseLI CCNNNNNNNGG 2 cut(s) 422, 578
BseMII CTCAG 6 cut(s) 15, 92, 147, 630, 710, 858
BseNI ACTGG 5 cut(s) 70, 122, 144, 531, 764
BseSI GKGCMC 1 cut(s) 249
BshFI GGCC 3 cut(s) 95, 143, 353
BsiHKAI GWGCWC 1 cut(s) 249
BslI CCNNNNNNNGG 2 cut(s) 422, 578
BsmAI GTCTC 1 cut(s) 417
BsmI GAATGC 3 cut(s) 404, 640, 790
BsnI GGCC 3 cut(s) 95, 143, 353
Bsp1286I GDGCHC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 78
BspACI CCGC 2 cut(s) 290, 736
BspANI GGCC 3 cut(s) 95, 143, 353
BspCNI CTCAG 6 cut(s) 16, 91, 148, 631, 711, 859
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 354, 711
BspMI ACCTGC 1 cut(s) 624
BspOI GCTAGC 1 cut(s) 750
BsrI ACTGG 5 cut(s) 70, 122, 144, 531, 764
BssECI CCNNGG 2 cut(s) 572, 896
BssNAI GTATAC 1 cut(s) 88
Bst1107I GTATAC 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 347, 897
Bst4CI ACNGT 1 cut(s) 611
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 3 cut(s) 32, 361, 748
BstDEI CTNAG 6 cut(s) 24, 78, 156, 639, 719, 867
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 2 cut(s) 194, 220
BstMAI GTCTC 1 cut(s) 417
BstMWI GCNNNNNNNGC 2 cut(s) 140, 266
BstNI CCWGG 2 cut(s) 347, 897
BstSCI CCNGG 2 cut(s) 345, 895
BstSFI CTRYAG 1 cut(s) 335
BstSLI GKGCMC 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 65
BstZ17I GTATAC 1 cut(s) 88
Bsu36I CCTNAGG 1 cut(s) 719
BsuI GTATCC 1 cut(s) 110
BsuRI GGCC 3 cut(s) 95, 143, 353
BtgI CCRYGG 1 cut(s) 572
BtsCI GGATG 2 cut(s) 194, 220
BtsIMutI CAGTG 2 cut(s) 129, 137
BveI ACCTGC 1 cut(s) 624
Cac8I GCNNGC 3 cut(s) 32, 361, 748
CciI TCATGA 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 68, 352
CseI GACGC 1 cut(s) 8
Csp6I GTAC 3 cut(s) 4, 314, 679
CviAII CATG 3 cut(s) 47, 692, 820
CviQI GTAC 3 cut(s) 4, 314, 679
DdeI CTNAG 6 cut(s) 24, 78, 156, 639, 719, 867
EaeI YGGCCR 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 876
Eco81I CCTNAGG 1 cut(s) 719
EcoRII CCWGG 2 cut(s) 345, 895
FaeI CATG 3 cut(s) 50, 695, 823
FatI CATG 3 cut(s) 46, 691, 819
FblI GTMKAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 736
FokI GGATG 2 cut(s) 181, 207
Fsp4HI GCNGC 1 cut(s) 736
FspBI CTAG 2 cut(s) 540, 747
GluI GCNGC 1 cut(s) 736
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 3 cut(s) 95, 143, 353
HgaI GACGC 1 cut(s) 8
Hin1II CATG 3 cut(s) 50, 695, 823
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 5 cut(s) 386, 426, 584, 730, 887
HphI GGTGA 2 cut(s) 560, 605
Hpy166II GTNNAC 4 cut(s) 88, 247, 551, 607
Hpy188I TCNGA 3 cut(s) 729, 856, 868
Hpy188III TCNNGA 7 cut(s) 23, 47, 58, 623, 718, 812, 884
Hpy8I GTNNAC 4 cut(s) 88, 247, 551, 607
HpyAV CCTTC 1 cut(s) 873
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4V TGCA 6 cut(s) 247, 254, 260, 451, 464, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 266
HpyF3I CTNAG 6 cut(s) 24, 78, 156, 639, 719, 867
Hsp92II CATG 3 cut(s) 50, 695, 823
LmnI GCTCC 1 cut(s) 715
LweI GCATC 2 cut(s) 473, 805
MaeI CTAG 2 cut(s) 540, 747
MaeIII GTNAC 1 cut(s) 611
MboII GAAGA 6 cut(s) 73, 197, 320, 560, 835, 883
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 5 cut(s) 50, 232, 672, 753, 769
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 2 cut(s) 162, 403
MnlI CCTC 5 cut(s) 107, 145, 634, 662, 714
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 381, 630
MslI CAYNNNNRTG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 347, 897
Mva1269I GAATGC 3 cut(s) 404, 640, 790
MvaI CCWGG 2 cut(s) 347, 897
MwoI GCNNNNNNNGC 2 cut(s) 140, 266
NheI GCTAGC 1 cut(s) 746
NlaIII CATG 3 cut(s) 50, 695, 823
NlaIV GGNNCC 2 cut(s) 354, 711
NmuCI GTSAC 1 cut(s) 611
PagI TCATGA 1 cut(s) 46
PaqCI CACCTGC 1 cut(s) 624
PctI GAATGC 3 cut(s) 404, 640, 790
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 4 cut(s) 386, 426, 730, 887
PkrI GCNGC 1 cut(s) 737
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Psp6I CCWGG 2 cut(s) 345, 895
PspGI CCWGG 2 cut(s) 345, 895
PspN4I GGNNCC 2 cut(s) 354, 711
PspPI GGNCC 2 cut(s) 68, 352
RsaI GTAC 3 cut(s) 5, 315, 680
RsaNI GTAC 3 cut(s) 4, 314, 679
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 2 cut(s) 381, 630
SatI GCNGC 1 cut(s) 736
Sau96I GGNCC 2 cut(s) 68, 352
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 2 cut(s) 347, 897
SduI GDGCHC 1 cut(s) 249
SetI ASST 9 cut(s) 32, 271, 368, 483, 541, 618, 645, 837, 865
SfaNI GCATC 2 cut(s) 473, 805
SfcI CTRYAG 1 cut(s) 335
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 368
Sse9I AATT 5 cut(s) 50, 232, 672, 753, 769
SsiI CCGC 2 cut(s) 290, 736
SspMI CTAG 2 cut(s) 540, 747
StyD4I CCNGG 2 cut(s) 345, 895
TaaI ACNGT 1 cut(s) 611
TasI AATT 5 cut(s) 50, 232, 672, 753, 769
TatI WGTACW 1 cut(s) 678
TauI GCSGC 1 cut(s) 738
TfiI GAWTC 4 cut(s) 386, 426, 730, 887
Tru1I TTAA 2 cut(s) 381, 630
Tru9I TTAA 2 cut(s) 381, 630
TscAI CASTG 2 cut(s) 129, 144
TseFI GTSAC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 4 cut(s) 63, 191, 209, 836
TspRI CASTG 2 cut(s) 129, 144
VneI GTGCAC 1 cut(s) 245
VpaK11BI GGWCC 1 cut(s) 68
XapI RAATTY 2 cut(s) 50, 232
XmiI GTMKAC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 540, 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.