Rh1AG385500

N-terminal cysteine-rich region of Transmembrane protein 135

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
61635200 .. 61646114
10915 bp
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UTR
Exon/CDS
Intron
Rh1AG385500.1

Sequence Viewer

Length: 1404 bp
ATGCCGTCGCCGTCGTCTCTCCCCAAACCCCCGACCTCCCCGCCGCCGCCCCTAGACGCCGCCGCCTCCGACCCCCTCCGCGAGGCCGAGGACCGCCTCCGCGACGCCATTGAGGAGCTCCAGCGCCGCCAGCGCACCGCCGCAGCCCGTGGCTCCCAGCACCACCCCCCCTGCGACCACGCCAACGACGAGTCGTGCGTCGCCCACGCCATTGGGAACCTCTGCCAGAGCTTTCTCCTCTCTTATGGCGTCCGAGTTGGGATTGGGATTCTTCTTCGCGCGTTTAAGCTCGCTCGCAGACAATCCTACTCTTCCTTGCTCGATCTTAAGCAACTTGTCTCGGAAAAAGATCTGATTGTGAGAGAAGAAGCATGCCGAATTGGCTTATTTTTTGGTGGATTTAGTGGTTCTTACCATGCTATTAGATGCTTGTTGAGAAAGTACAGAAAGAAAGAGACACCATTGAATGCAATCTTAGCAGGTTCAATTGCGGGGTTGTCTATTTTAGCATTAGATGACTCAAACCGAAGGCGCACACTATCTCTGTACTTGTTGGCAAGGGTAGCACAGTCTGCTTATAATTCTGCAAAGTCTAAGAACAAGTTTCACTTTTGGGGAAGCCACTGGAGGCATGGCGATTCTCTGCTCTTTTCTATTGCATGTGCACAGGTTATGTACGCCTTTGTAATGCGTCCTGAGAGCTTGCCTAAATCTTATCATGAATTTATCCAGAAGACTGGTCCTGTTGCTCAGCCTGTATACAAGGCCGTAAGGGAGTGTTGTAGAGGATACCGAGTGGATATTGCCTCACTGGCTGATTACTTGGCTGAGAAAGGGAGAAGCGATATAAAATTGGAAGAGTTTCCATCCATTTTGCCTTGTTCTGTTATTCATCCCCACACAAATTCTTGTTTAGTGCACAACGCAACTGCAACATCAGCTACATTTAGGAAAACATTTCCGCTTTACTTCTCTTTGACGTTTGTACCATTTGTCGTTCTTCGCCTACAGAAGTTCCTGGCGGCCCCTGCTCGCACCTTTATGTTTGCTGTTAAAGATTCTGTTCGCTCAACAGCATTCTTGTCTGCTTTTGTTGGAATCTTTCAGGGTGTGATATGTTTGCACAGAAAAGTTGCATCAAAAGACAACAAGCTTGTATATTGGATTGCTGGTGGTCTATCTGCTCTTTCAGTTCTACTGGAGAAAAAGGCTAGGCGTGGTGAACTTGCTCTATATGTTCTTCCACGGGCAGGAGATTCTTTGTGGTATATTTTAGTAAACCGTCACCTGCTTCCAGATATTAAGAATGCTGAGGTATTGCTTTACTACCTTGCCACTTGTTCCTTGACTTTGATCTCTATCACCATTGAGAAGGAAACTTGTTTTCAACCAATCTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

467

Amino Acids

52.13

Weight (kDa)

9.54

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 75 - 167 7.8e-10 Tim17/Tim22/Tim23/Pmp24 family
TMEM135_C_rich PF15982 296 - 424 1.2e-08 N-terminal cysteine-rich region of Transmembrane protein 135
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012420)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 579
AarI CACCTGC 1 cut(s) 1296
Acc36I ACCTGC 2 cut(s) 470, 1296
AccI GTMKAC 1 cut(s) 759
AccII CGCG 4 cut(s) 81, 102, 279, 281
AcsI RAATTY 2 cut(s) 722, 904
AcyI GRCGYC 3 cut(s) 57, 105, 249
AfaI GTAC 4 cut(s) 443, 548, 677, 987
AfiI CCNNNNNNNGG 2 cut(s) 82, 1250
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 4 cut(s) 466, 486, 1388, 1399
AjnI CCWGG 1 cut(s) 1017
AluBI AGCT 6 cut(s) 118, 231, 289, 702, 941, 1153
AluI AGCT 6 cut(s) 118, 231, 289, 702, 941, 1153
Alw21I GWGCWC 3 cut(s) 120, 667, 921
Alw26I GTCTC 3 cut(s) 21, 343, 449
Alw44I GTGCAC 2 cut(s) 663, 917
AoxI GGCC 3 cut(s) 84, 765, 1023
ApaLI GTGCAC 2 cut(s) 663, 917
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 2 cut(s) 722, 904
Asp700I GAANNNNTTC 1 cut(s) 861
AspLEI GCGC 4 cut(s) 126, 135, 281, 534
AspS9I GGNCC 3 cut(s) 91, 740, 1024
AsuHPI GGTGA 3 cut(s) 1232, 1277, 1354
AvaII GGWCC 2 cut(s) 91, 740
BaeGI GKGCMC 2 cut(s) 667, 921
BaeI ACNNNNGTAYC 2 cut(s) 969, 1002
BanII GRGCYC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 740
Bbv12I GWGCWC 3 cut(s) 120, 667, 921
BbvCI CCTCAGC 1 cut(s) 1311
BbvI GCAGC 1 cut(s) 155
BccI CCATC 1 cut(s) 874
BceAI ACGGC 1 cut(s) 752
BciT130I CCWGG 1 cut(s) 1019
BciVI GTATCC 1 cut(s) 782
BcoDI GTCTC 3 cut(s) 21, 343, 449
BfaI CTAG 2 cut(s) 53, 1212
BfmI CTRYAG 1 cut(s) 1007
BfoI RGCGCY 1 cut(s) 127
BfrI CTTAAG 1 cut(s) 326
BfuAI ACCTGC 2 cut(s) 470, 1296
BfuI GTATCC 1 cut(s) 782
BglI GCCNNNNNGGC 2 cut(s) 381, 812
BglII AGATCT 1 cut(s) 349
BisI GCNGC 8 cut(s) 44, 47, 60, 63, 127, 141, 144, 1023
BlpI GCTNAGC 1 cut(s) 750
BlsI GCNGC 8 cut(s) 45, 48, 61, 64, 128, 142, 145, 1024
Bme1390I CCNGG 1 cut(s) 1019
Bme18I GGWCC 2 cut(s) 91, 740
BmgT120I GGNCC 3 cut(s) 91, 740, 1024
BmiI GGNNCC 3 cut(s) 154, 218, 1026
BmrFI CCNGG 1 cut(s) 1019
BmsI GCATC 2 cut(s) 416, 1145
BpiI GAAGAC 1 cut(s) 740
BpmI CTGGAG 3 cut(s) 104, 646, 1220
Bpu10I CCTNAGC 1 cut(s) 1311
Bpu1102I GCTNAGC 1 cut(s) 750
BsaBI GATNNNNATC 1 cut(s) 1358
BsaHI GRCGYC 3 cut(s) 57, 105, 249
BsaJI CCNNGG 3 cut(s) 87, 148, 1244
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 1250
Bse1I ACTGG 4 cut(s) 629, 742, 816, 1203
Bse8I GATNNNNATC 1 cut(s) 1358
BseBI CCWGG 1 cut(s) 1019
BseDI CCNNGG 3 cut(s) 87, 148, 1244
BseGI GGATG 2 cut(s) 866, 892
BseJI GATNNNNATC 1 cut(s) 1358
BseLI CCNNNNNNNGG 2 cut(s) 82, 1250
BseMII CTCAG 4 cut(s) 687, 764, 819, 1302
BseNI ACTGG 4 cut(s) 629, 742, 816, 1203
BseRI GAGGAG 2 cut(s) 128, 227
BseSI GKGCMC 2 cut(s) 667, 921
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 156
Bsh1236I CGCG 4 cut(s) 81, 102, 279, 281
BshFI GGCC 3 cut(s) 86, 767, 1025
BsiHKAI GWGCWC 3 cut(s) 120, 667, 921
BslI CCNNNNNNNGG 2 cut(s) 82, 1250
BsmAI GTCTC 3 cut(s) 21, 343, 449
BsmBI CGTCTC 1 cut(s) 21
BsmI GAATGC 3 cut(s) 472, 1076, 1312
BsnI GGCC 3 cut(s) 86, 767, 1025
Bsp1286I GDGCHC 3 cut(s) 120, 667, 921
Bsp143I GATC 3 cut(s) 322, 349, 1353
Bsp1720I GCTNAGC 1 cut(s) 750
BspANI GGCC 3 cut(s) 86, 767, 1025
BspCNI CTCAG 4 cut(s) 688, 763, 820, 1303
BspFNI CGCG 4 cut(s) 81, 102, 279, 281
BspHI TCATGA 1 cut(s) 718
BspLI GGNNCC 3 cut(s) 154, 218, 1026
BspMI ACCTGC 2 cut(s) 470, 1296
BspTI CTTAAG 1 cut(s) 326
BsrI ACTGG 4 cut(s) 629, 742, 816, 1203
BssECI CCNNGG 3 cut(s) 87, 148, 1244
BssMI GATC 3 cut(s) 322, 349, 1353
BssNAI GTATAC 1 cut(s) 760
BssNI GRCGYC 3 cut(s) 57, 105, 249
Bst1107I GTATAC 1 cut(s) 760
Bst2UI CCWGG 1 cut(s) 1019
Bst4CI ACNGT 2 cut(s) 570, 1283
Bst6I CTCTTC 2 cut(s) 316, 852
BstACI GRCGYC 3 cut(s) 57, 105, 249
BstAFI CTTAAG 1 cut(s) 326
BstAPI GCANNNNNTGC 1 cut(s) 572
BstC8I GCNNGC 6 cut(s) 131, 291, 295, 373, 704, 1033
BstDEI CTNAG 6 cut(s) 475, 594, 696, 750, 828, 1311
BstDSI CCRYGG 2 cut(s) 148, 1244
BstENI CCTNNNNNAGG 1 cut(s) 80
BstF5I GGATG 2 cut(s) 866, 892
BstFNI CGCG 4 cut(s) 81, 102, 279, 281
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 4 cut(s) 126, 135, 281, 534
BstKTI GATC 3 cut(s) 325, 352, 1356
BstMAI GTCTC 3 cut(s) 21, 343, 449
BstMBI GATC 3 cut(s) 322, 349, 1353
BstMWI GCNNNNNNNGC 9 cut(s) 130, 132, 381, 476, 563, 572, 812, 938, 1028
BstNI CCWGG 1 cut(s) 1019
BstNSI RCATGY 2 cut(s) 375, 663
BstSCI CCNGG 1 cut(s) 1017
BstSFI CTRYAG 1 cut(s) 1007
BstSLI GKGCMC 2 cut(s) 667, 921
BstUI CGCG 4 cut(s) 81, 102, 279, 281
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 740
BstX2I RGATCY 1 cut(s) 349
BstXI CCANNNNNNTGG 2 cut(s) 212, 737
BstYI RGATCY 1 cut(s) 349
BstZ17I GTATAC 1 cut(s) 760
BsuI GTATCC 1 cut(s) 782
BsuRI GGCC 3 cut(s) 86, 767, 1025
BtgI CCRYGG 2 cut(s) 148, 1244
BtsCI GGATG 2 cut(s) 866, 892
BtsIMutI CAGTG 2 cut(s) 622, 809
BveI ACCTGC 2 cut(s) 470, 1296
Cac8I GCNNGC 6 cut(s) 131, 291, 295, 373, 704, 1033
CciI TCATGA 1 cut(s) 718
CfoI GCGC 4 cut(s) 126, 135, 281, 534
Cfr13I GGNCC 3 cut(s) 91, 740, 1024
CseI GACGC 5 cut(s) 65, 113, 187, 238, 680
Csp6I GTAC 4 cut(s) 442, 547, 676, 986
CviAII CATG 5 cut(s) 372, 416, 632, 660, 719
CviQI GTAC 4 cut(s) 442, 547, 676, 986
DdeI CTNAG 6 cut(s) 475, 594, 696, 750, 828, 1311
DpnI GATC 3 cut(s) 324, 351, 1355
DpnII GATC 3 cut(s) 322, 349, 1353
Eam1104I CTCTTC 2 cut(s) 316, 852
EarI CTCTTC 2 cut(s) 316, 852
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 91, 740
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 1017
EcoT38I GRGCYC 1 cut(s) 120
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 5 cut(s) 375, 419, 635, 663, 722
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FatI CATG 5 cut(s) 371, 415, 631, 659, 718
FauI CCCGC 2 cut(s) 48, 484
FblI GTMKAC 1 cut(s) 759
Fnu4HI GCNGC 8 cut(s) 44, 47, 60, 63, 127, 141, 144, 1023
FokI GGATG 2 cut(s) 853, 879
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 8 cut(s) 44, 47, 60, 63, 127, 141, 144, 1023
FspBI CTAG 2 cut(s) 53, 1212
GlaI GCGC 4 cut(s) 125, 134, 280, 533
GluI GCNGC 8 cut(s) 44, 47, 60, 63, 127, 141, 144, 1023
GsaI CCCAGC 1 cut(s) 160
GsuI CTGGAG 3 cut(s) 104, 646, 1220
HaeII RGCGCY 1 cut(s) 127
HaeIII GGCC 3 cut(s) 86, 767, 1025
HgaI GACGC 5 cut(s) 65, 113, 187, 238, 680
HhaI GCGC 4 cut(s) 126, 135, 281, 534
Hin1I GRCGYC 3 cut(s) 57, 105, 249
Hin1II CATG 5 cut(s) 375, 419, 635, 663, 722
Hin6I GCGC 4 cut(s) 124, 133, 279, 532
HinP1I GCGC 4 cut(s) 124, 133, 279, 532
HindIII AAGCTT 1 cut(s) 1151
HinfI GANTC 7 cut(s) 191, 268, 518, 638, 1058, 1098, 1256
HphI GGTGA 3 cut(s) 1232, 1277, 1354
Hpy166II GTNNAC 5 cut(s) 665, 760, 919, 1223, 1279
Hpy188I TCNGA 4 cut(s) 70, 254, 343, 354
Hpy188III TCNNGA 5 cut(s) 695, 719, 730, 1295, 1396
Hpy8I GTNNAC 5 cut(s) 665, 760, 919, 1223, 1279
Hpy99I CGWCG 5 cut(s) 10, 16, 107, 191, 203
HpyAV CCTTC 2 cut(s) 522, 1366
HpyCH4III ACNGT 2 cut(s) 570, 1283
HpyCH4IV ACGT 1 cut(s) 980
HpyCH4V TGCA 8 cut(s) 470, 587, 659, 665, 919, 932, 1123, 1136
HpyF10VI GCNNNNNNNGC 9 cut(s) 130, 132, 381, 476, 563, 572, 812, 938, 1028
HpyF3I CTNAG 6 cut(s) 475, 594, 696, 750, 828, 1311
HpySE526I ACGT 1 cut(s) 980
Hsp92I GRCGYC 3 cut(s) 57, 105, 249
Hsp92II CATG 5 cut(s) 375, 419, 635, 663, 722
HspAI GCGC 4 cut(s) 124, 133, 279, 532
Kzo9I GATC 3 cut(s) 322, 349, 1353
LmnI GCTCC 3 cut(s) 115, 123, 158
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 2 cut(s) 416, 1145
MaeI CTAG 2 cut(s) 53, 1212
MaeII ACGT 1 cut(s) 980
MaeIII GTNAC 1 cut(s) 1283
MalI GATC 3 cut(s) 324, 351, 1355
MboI GATC 3 cut(s) 322, 349, 1353
MboII GAAGA 8 cut(s) 263, 266, 303, 377, 745, 869, 992, 1232
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 3 cut(s) 120, 667, 921
MluCI AATT 7 cut(s) 378, 486, 580, 722, 851, 904, 1399
MlyI GAGTC 2 cut(s) 200, 512
MmeI TCCRAC 2 cut(s) 93, 1075
MroXI GAANNNNTTC 1 cut(s) 861
MseI TTAA 4 cut(s) 285, 327, 1053, 1302
MslI CAYNNNNRTG 1 cut(s) 1040
MspCI CTTAAG 1 cut(s) 326
MspR9I CCNGG 1 cut(s) 1019
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 3 cut(s) 472, 1076, 1312
MvaI CCWGG 1 cut(s) 1019
MvnI CGCG 4 cut(s) 81, 102, 279, 281
MwoI GCNNNNNNNGC 9 cut(s) 130, 132, 381, 476, 563, 572, 812, 938, 1028
NdeII GATC 3 cut(s) 322, 349, 1353
NlaIII CATG 5 cut(s) 375, 419, 635, 663, 722
NlaIV GGNNCC 3 cut(s) 154, 218, 1026
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 1283
NspI RCATGY 2 cut(s) 375, 663
PaeI GCATGC 1 cut(s) 375
PagI TCATGA 1 cut(s) 718
PaqCI CACCTGC 1 cut(s) 1296
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 195
PctI GAATGC 3 cut(s) 472, 1076, 1312
PdmI GAANNNNTTC 1 cut(s) 861
PfeI GAWTC 5 cut(s) 268, 638, 1058, 1098, 1256
PkrI GCNGC 8 cut(s) 45, 48, 61, 64, 128, 142, 145, 1024
PleI GAGTC 2 cut(s) 199, 512
PpsI GAGTC 2 cut(s) 199, 512
PsiI TTATAA 1 cut(s) 579
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 1017
PspFI CCCAGC 1 cut(s) 156
PspGI CCWGG 1 cut(s) 1017
PspN4I GGNNCC 3 cut(s) 154, 218, 1026
PspPI GGNCC 3 cut(s) 91, 740, 1024
PsuI RGATCY 1 cut(s) 349
RsaI GTAC 4 cut(s) 443, 548, 677, 987
RsaNI GTAC 4 cut(s) 442, 547, 676, 986
RseI CAYNNNNRTG 1 cut(s) 1040
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 4 cut(s) 285, 327, 1053, 1302
SatI GCNGC 8 cut(s) 44, 47, 60, 63, 127, 141, 144, 1023
Sau3AI GATC 3 cut(s) 322, 349, 1353
Sau96I GGNCC 3 cut(s) 91, 740, 1024
SchI GAGTC 2 cut(s) 200, 512
ScrFI CCNGG 1 cut(s) 1019
SduI GDGCHC 3 cut(s) 120, 667, 921
SfaNI GCATC 2 cut(s) 416, 1145
SfcI CTRYAG 1 cut(s) 1007
SinI GGWCC 2 cut(s) 91, 740
SmiMI CAYNNNNRTG 1 cut(s) 1040
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SphI GCATGC 1 cut(s) 375
Sse9I AATT 7 cut(s) 378, 486, 580, 722, 851, 904, 1399
SspMI CTAG 2 cut(s) 53, 1212
SstI GAGCTC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 1017
TaaI ACNGT 2 cut(s) 570, 1283
TaiI ACGT 1 cut(s) 983
TaqI TCGA 1 cut(s) 321
TasI AATT 7 cut(s) 378, 486, 580, 722, 851, 904, 1399
TatI WGTACW 2 cut(s) 441, 546
TauI GCSGC 7 cut(s) 46, 49, 62, 65, 129, 143, 1025
TfiI GAWTC 5 cut(s) 268, 638, 1058, 1098, 1256
Tru1I TTAA 4 cut(s) 285, 327, 1053, 1302
Tru9I TTAA 4 cut(s) 285, 327, 1053, 1302
TscAI CASTG 2 cut(s) 629, 816
TseFI GTSAC 1 cut(s) 1283
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 1283
TspDTI ATGAA 2 cut(s) 735, 881
TspRI CASTG 2 cut(s) 629, 816
Vha464I CTTAAG 1 cut(s) 326
VneI GTGCAC 2 cut(s) 663, 917
VpaK11BI GGWCC 2 cut(s) 91, 740
XagI CCTNNNNNAGG 1 cut(s) 80
XapI RAATTY 2 cut(s) 722, 904
XceI RCATGY 2 cut(s) 375, 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 629
XmiI GTMKAC 1 cut(s) 759
XmnI GAANNNNTTC 1 cut(s) 861
XspI CTAG 2 cut(s) 53, 1212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.