Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004671

Physical Location & Seq

Genomic Coordinates Reverse (-)

28243227 .. 28254332

Gene Structure 11106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2454 bp

ATGGATGCTTCGGATATATGTCCAACCGAGGATGCCGTTCAGGCTTTTTTGGACCACTTGGTTGACCCAATACTTCCAGCAAAATCTTCTCTGCGGGATACCCCATCACTCTCTCAACAACAGTCTGTTGCAAAACAGGTGCATGCTGTTGTGCTACTATACAATTACTACCACAGAAAGCAAGGTCCAAAGCTAGAGGTTTTGTGTTTTAATTCGTTTTGCAAGTTGGTTTTGGATCTGAAACCAGCCTTGCTGGCTCATATGAAATTTATGAAAAGGTCAGGTGATACTGAATTGGTTGATCAGGAGAAACAACTTTCAGTTACTGAAAGAACAATAATGGAAGCATGTCAAATATCTACAAGTTTAGATGCATCCATGGGTGCTCCAAACACTGAGGGATGGCCAATTACCAAAGTTGCAGTTCTTTTAGTTGACTCCAAGAAGGAGAACTGCTATTTGCAATTCAGTTCCAATTCCATGACCCAGGGGGTTTGGTCAGTGATTGATAAAAATTTGGAGGTCAGAGATCACAGTTCAGAAGACACAAGAGGGTTAAAACATGTAAACAAAAACAAAAGAGTCACTGGAAAACCTTCAAGAGGAGAACCGAGGATTGATGAAACTAGTTGTGAAAAACTGGCATATTCAGCAATTACTGAGGCTACAGGTATTAGTCAAAATGATCTTCTTGTTTTGGAAAGCCATGTTGTATTTTCGGATAGTAAAGAAAAGGCAGCTGCTTGTTTTTTTATAGTTCAGTGTACCCAATCAGGCAAGGGTGATATTCAGCTTCCTATTAAAGATGTTATTGACAGCCTCCAGGGTCCTCTGGTCACAAAGAATTCCCGCGGCTGGACAGTTACAACAGTTGTTGAGTACTTCCATGTGCTTCCTTATGCTGAGATTTTGTCCGACTGGTTTCATAGGTGTGCTACTTACATTTTTCTTCGTTATTCCTTGTCATTGGATGCAAGCTTTTCTAGCATATGCATTGTGAAGATGGAATCTGAAAATCAGTGCTGTGGTACTTATAATATCATAATAGTCCTAGCCTTCCCCTTTGACACTGTAGGACATCACTTTGGTAGCCCCATTGCTCTGTATATAACTGGGATATTTGTTTATGGGAAATTCAATTCTGATGCACAAGATGCCTATTGGAGAGAATTCTCAAATGGTTTGAAAGATTCAAGGCTAGGAGTGGGAAATGTAAATGTGGCTAGCCCTAAAAGGACTGAAACACCTTCCAAACCAGGAATTTGCAAAAATCAAGAGAAGTCTCATGTAATTGAGGAAATGGAGTTGGAGGAGTCTTCCATGGTTGCCTCGAAGAAGGAAAAATTTGTAAGAAAATTTCAAGACCCGTTCAAGTTGATAAAGGATATTGGGAACAGCATAAGCAGTTCTACGCCTCGATCATATAAGCAGAAAGATACCACTGTATATAAAAATACAAGTCCGGCTGAAGCTCCCAATGGGCTTCAGAAATTGTGCATGGATGACTCTTCCATGGTTCCTTTGCAGAATGTAGAAAGCTGTGAGAAAATTTCAAGCACCGTTCAAGTTGTCAACCAGCAAAAAAAGATTTCCTCGATTCGCTCTGAACTAAATGGCTCAGTTGAGACTCTGAACCGGACAAGTCCATCCCTTACTGACAAGCTACAGATTAGTATAGCTTCAAAAGAACACATCTTGTCAGAAACTGCATTGAAAGTTCTTATGAAAAAAAGGAATGAGCTGTCTATTAAGAAGCGCAATATAGAGGATGAGCTTGCTCGTTGTGAAAAAGATATCCAGACAATTATAAATGGTGGTGAAGATGGCTCAGCAGTAATAGTTGAGTCTCTTATAGAAGGTTGTAATGATGGATATCTAAGAAATGAAAGGACTCATACACTGCTAGAAGAGGAATGCTCTTCTAAATCTGTCAAGAGGAAGAGGCTGTCAGAGGCTATCCTTGACAAGCAAAATCAATGCCAGGAATTGGATGGCATATGTTGCGAAAACAGCTGGGTGTTACCAACTTATTGTGTATCCCTATCAGATGGAGGATTCCAAGCTAATGTAACCGTAGAAGGTCTGGACTTCAAGTGTTCACGTGAGGGTGATCTGTGTTCCAGTCCTAGTGAAGCAAGAGAATCAGCTGCATTGCAAATGTTGGTAAAGTTGCGGAGCATGGCTGGCCAAGCCAAAAGGTTGCAGGTCAGGAATGTGAAAGCTCCTTATAGACAAGCTGCAATCTTTGCACCGGAGAAGATGCATTTTCTCTTCAGGGTAGGATTGTGGCATGACACTAAGAAATTAGGGTTTGCAGCTAAGAATTGGGGTGGTTTAGAGGGACCGTCAAGGTTTTGCTCCCCGGACAAAAATGGCCAAGGAGGGAATGTATGCCTTTTCAATCAGAAAGATGGAGTGAGTCGGGTCGAATCTCCAGAGTGGAGTAACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

817

Amino Acids

90.94

Weight (kDa)

6.77

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7913	PF25500	6 - 124	4.4e-55	Domain of unknown function (DUF7913)
DUF7915	PF25502	162 - 310	1.9e-62	Domain of unknown function (DUF7915)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05950 AT1G05950 AT1G05950 AT1G05950 AT1G05950
fragaria_vesca	FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700
malus_domestica	MD04G1007700.v1.1
prunus_persica	Prupe.1G191700_v2.0.a1 Prupe.1G191700_v2.0.a1 Prupe.1G191700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407011
rosa_laevigata	RLG00000008744
rosa_multiflora	Rmu_sc0000600.1_g000013
rosa_roxburghii	Rroxscaffold_5G00351720
rosa_rugosa	Rorug04G0076500 Rorug04G0076600 Rorug04G0076700
rosa_samantha	Rh4AG142000 Rh4BG139200 Rh4CG148600 Rh4DG136200
rosa_wichuraiana	Rw4G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1035, 1808
Acc36I	ACCTGC	1 cut(s)	2194
AccB7I	CCANNNNNTGG	1 cut(s)	1987
AccII	CGCG	1 cut(s)	852
AciI	CCGC	4 cut(s)	94, 850, 852, 2173
AclI	AACGTT	1 cut(s)	2448
AclWI	GGATC	1 cut(s)	243
AcoI	YGGCCR	3 cut(s)	404, 2185, 2374
AcsI	RAATTY	9 cut(s)	266, 514, 844, 1133, 1169, 1260, 1343, 1355, 1548
AcuI	CTGAAG	3 cut(s)	1469, 1488, 2257
AcvI	CACGTG	1 cut(s)	2102
AfaI	GTAC	3 cut(s)	766, 881, 1030
AfiI	CCNNNNNNNGG	3 cut(s)	602, 855, 1987
AflIII	ACRYGT	1 cut(s)	562
AhlI	ACTAGT	1 cut(s)	626
AjnI	CCWGG	4 cut(s)	486, 822, 1255, 1980
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	3 cut(s)	1287, 1619, 1851
AlwI	GGATC	1 cut(s)	243
AlwNI	CAGNNNCTG	2 cut(s)	326, 1706
AoxI	GGCC	3 cut(s)	404, 2185, 2374
ApeKI	GCWGC	5 cut(s)	737, 740, 2147, 2237, 2315
ApoI	RAATTY	9 cut(s)	266, 514, 844, 1133, 1169, 1260, 1343, 1355, 1548
Asp700I	GAANNNNTTC	1 cut(s)	595
AspLEI	GCGC	1 cut(s)	1758
AspS9I	GGNCC	4 cut(s)	52, 185, 827, 2342
AsuC2I	CCSGG	1 cut(s)	2363
AsuHPI	GGTGA	4 cut(s)	296, 794, 1829, 2120
AsuNHI	GCTAGC	1 cut(s)	1223
AvaII	GGWCC	4 cut(s)	52, 185, 827, 2342
BaeI	ACNNNNGTAYC	2 cut(s)	1428, 1461
BalI	TGGCCA	3 cut(s)	406, 2187, 2376
BbrPI	CACGTG	1 cut(s)	2102
BbsI	GAAGAC	2 cut(s)	549, 1308
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	5 cut(s)	727, 749, 2134, 2224, 2327
BccI	CCATC	9 cut(s)	112, 396, 997, 1654, 1817, 1862, 1985, 2042, 2405
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	4 cut(s)	488, 824, 1257, 1982
BciVI	GTATCC	2 cut(s)	91, 2047
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	2363
BcoDI	GTCTC	3 cut(s)	1287, 1619, 1851
BcuI	ACTAGT	1 cut(s)	626
BfaI	CTAG	8 cut(s)	194, 627, 984, 1052, 1199, 1224, 1904, 2127
BfmI	CTRYAG	3 cut(s)	666, 1071, 1664
BfuAI	ACCTGC	1 cut(s)	2194
BfuI	GTATCC	2 cut(s)	91, 2047
BglI	GCCNNNNNGGC	2 cut(s)	41, 254
BisI	GCNGC	6 cut(s)	738, 741, 853, 2148, 2238, 2316
BlpI	GCTNAGC	1 cut(s)	1828
BlsI	GCNGC	6 cut(s)	739, 742, 854, 2149, 2239, 2317
BmcAI	AGTACT	1 cut(s)	881
Bme1390I	CCNGG	5 cut(s)	488, 824, 1257, 1982, 2363
Bme18I	GGWCC	4 cut(s)	52, 185, 827, 2342
BmgT120I	GGNCC	4 cut(s)	52, 185, 827, 2342
BmiI	GGNNCC	3 cut(s)	828, 1518, 2343
BmrFI	CCNGG	5 cut(s)	488, 824, 1257, 1982, 2363
BmrI	ACTGGG	1 cut(s)	1122
BmsI	GCATC	7 cut(s)	22, 361, 383, 961, 1135, 1144, 2250
BmtI	GCTAGC	1 cut(s)	1227
BmuI	ACTGGG	1 cut(s)	1122
BpiI	GAAGAC	2 cut(s)	549, 1308
BplI	GAGNNNNNCTC	2 cut(s)	1901, 1933
BpmI	CTGGAG	2 cut(s)	806, 2418
Bpu1102I	GCTNAGC	1 cut(s)	1828
BpuMI	CCSGG	1 cut(s)	2363
BsaAI	YACGTR	1 cut(s)	2102
BsaBI	GATNNNNATC	1 cut(s)	1872
BsaWI	WCCGGW	2 cut(s)	1635, 2251
BsaXI	ACNNNNNCTCC	2 cut(s)	2373, 2403
Bsc4I	CCNNNNNNNGG	3 cut(s)	602, 855, 1987
Bse1I	ACTGG	5 cut(s)	592, 645, 923, 1117, 2121
Bse3DI	GCAATG	2 cut(s)	1095, 2150
Bse8I	GATNNNNATC	1 cut(s)	1872
BseBI	CCWGG	4 cut(s)	488, 824, 1257, 1982
BseGI	GGATG	9 cut(s)	10, 37, 374, 407, 976, 1507, 1646, 1774, 1996
BseJI	GATNNNNATC	1 cut(s)	1872
BseLI	CCNNNNNNNGG	3 cut(s)	602, 855, 1987
BseMI	GCAATG	2 cut(s)	1095, 2150
BseMII	CTCAG	5 cut(s)	387, 651, 894, 1632, 1842
BseNI	ACTGG	5 cut(s)	592, 645, 923, 1117, 2121
BseRI	GAGGAG	2 cut(s)	618, 1325
BseXI	GCAGC	5 cut(s)	727, 749, 2134, 2224, 2327
BseYI	CCCAGC	1 cut(s)	2013
Bsh1236I	CGCG	1 cut(s)	852
BshFI	GGCC	3 cut(s)	406, 2187, 2376
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	4 cut(s)	1463, 1636, 2252, 2363
BslFI	GGGAC	1 cut(s)	2355
BslI	CCNNNNNNNGG	3 cut(s)	602, 855, 1987
BsmAI	GTCTC	3 cut(s)	1287, 1619, 1851
BsmFI	GGGAC	1 cut(s)	2355
BsmI	GAATGC	1 cut(s)	1919
BsnI	GGCC	3 cut(s)	406, 2187, 2376
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	6 cut(s)	235, 301, 529, 685, 1418, 2110
Bsp1720I	GCTNAGC	1 cut(s)	1828
Bsp19I	CCATGG	3 cut(s)	378, 1320, 1512
BspACI	CCGC	4 cut(s)	94, 850, 852, 2173
BspANI	GGCC	3 cut(s)	406, 2187, 2376
BspCNI	CTCAG	5 cut(s)	388, 652, 895, 1631, 1841
BspFNI	CGCG	1 cut(s)	852
BspLI	GGNNCC	3 cut(s)	828, 1518, 2343
BspMI	ACCTGC	1 cut(s)	2194
BspOI	GCTAGC	1 cut(s)	1227
BspPI	GGATC	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	1924
BsrDI	GCAATG	2 cut(s)	1095, 2150
BsrI	ACTGG	5 cut(s)	592, 645, 923, 1117, 2121
BssMI	GATC	6 cut(s)	235, 301, 529, 685, 1418, 2110
BssT1I	CCWWGG	4 cut(s)	378, 1320, 1512, 2377
Bst2UI	CCWGG	4 cut(s)	488, 824, 1257, 1982
Bst4CI	ACNGT	9 cut(s)	123, 536, 862, 871, 1072, 1444, 1561, 2074, 2346
Bst6I	CTCTTC	5 cut(s)	1513, 1902, 1924, 1934, 2276
BstAPI	GCANNNNNTGC	3 cut(s)	1154, 2001, 2246
BstBAI	YACGTR	1 cut(s)	2102
BstC8I	GCNNGC	6 cut(s)	144, 255, 976, 1225, 1776, 2185
BstDEI	CTNAG	8 cut(s)	396, 660, 903, 1618, 1828, 1877, 2298, 2319
BstDSI	CCRYGG	4 cut(s)	378, 850, 1320, 1512
BstENI	CCTNNNNNAGG	1 cut(s)	600
BstF5I	GGATG	9 cut(s)	10, 37, 374, 407, 976, 1507, 1646, 1774, 1996
BstFNI	CGCG	1 cut(s)	852
BstHHI	GCGC	1 cut(s)	1758
BstKTI	GATC	6 cut(s)	238, 304, 532, 688, 1421, 2113
BstMAI	GTCTC	3 cut(s)	1287, 1619, 1851
BstMBI	GATC	6 cut(s)	235, 301, 529, 685, 1418, 2110
BstNI	CCWGG	4 cut(s)	488, 824, 1257, 1982
BstNSI	RCATGY	3 cut(s)	146, 351, 566
BstSCI	CCNGG	5 cut(s)	486, 822, 1255, 1980, 2361
BstSFI	CTRYAG	3 cut(s)	666, 1071, 1664
BstUI	CGCG	1 cut(s)	852
BstV1I	GCAGC	5 cut(s)	727, 749, 2134, 2224, 2327
BstV2I	GAAGAC	2 cut(s)	549, 1308
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BsuI	GTATCC	2 cut(s)	91, 2047
BsuRI	GGCC	3 cut(s)	406, 2187, 2376
BtgI	CCRYGG	4 cut(s)	378, 850, 1320, 1512
BtsCI	GGATG	9 cut(s)	10, 37, 374, 407, 976, 1507, 1646, 1774, 1996
BtsI	GCAGTG	1 cut(s)	1898
BtsIMutI	CAGTG	8 cut(s)	393, 507, 585, 767, 1025, 1068, 1440, 1898
BveI	ACCTGC	1 cut(s)	2194
Cac8I	GCNNGC	6 cut(s)	144, 255, 976, 1225, 1776, 2185
CaiI	CAGNNNCTG	2 cut(s)	326, 1706
CfoI	GCGC	1 cut(s)	1758
Cfr13I	GGNCC	4 cut(s)	52, 185, 827, 2342
Cfr42I	CCGCGG	1 cut(s)	853
Csp6I	GTAC	3 cut(s)	765, 880, 1029
CviQI	GTAC	3 cut(s)	765, 880, 1029
DdeI	CTNAG	8 cut(s)	396, 660, 903, 1618, 1828, 1877, 2298, 2319
DpnI	GATC	6 cut(s)	237, 303, 531, 687, 1420, 2112
DpnII	GATC	6 cut(s)	235, 301, 529, 685, 1418, 2110
EaeI	YGGCCR	3 cut(s)	404, 2185, 2374
Eam1104I	CTCTTC	5 cut(s)	1513, 1902, 1924, 1934, 2276
EarI	CTCTTC	5 cut(s)	1513, 1902, 1924, 1934, 2276
Eco130I	CCWWGG	4 cut(s)	378, 1320, 1512, 2377
Eco32I	GATATC	2 cut(s)	1795, 1874
Eco47I	GGWCC	4 cut(s)	52, 185, 827, 2342
Eco57I	CTGAAG	3 cut(s)	1469, 1488, 2257
Eco72I	CACGTG	1 cut(s)	2102
EcoNI	CCTNNNNNAGG	1 cut(s)	600
EcoO109I	RGGNCCY	1 cut(s)	827
EcoRI	GAATTC	2 cut(s)	844, 1169
EcoRII	CCWGG	4 cut(s)	486, 822, 1255, 1980
EcoRV	GATATC	2 cut(s)	1795, 1874
EcoT14I	CCWWGG	4 cut(s)	378, 1320, 1512, 2377
EcoT22I	ATGCAT	3 cut(s)	376, 995, 2265
ErhI	CCWWGG	4 cut(s)	378, 1320, 1512, 2377
FaqI	GGGAC	1 cut(s)	2355
FauI	CCCGC	2 cut(s)	87, 857
FauNDI	CATATG	3 cut(s)	261, 989, 1997
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	6 cut(s)	738, 741, 853, 2148, 2238, 2316
FokI	GGATG	9 cut(s)	17, 44, 361, 414, 983, 1514, 1633, 1781, 2003
Fsp4HI	GCNGC	6 cut(s)	738, 741, 853, 2148, 2238, 2316
FspBI	CTAG	8 cut(s)	194, 627, 984, 1052, 1199, 1224, 1904, 2127
GlaI	GCGC	1 cut(s)	1757
GluI	GCNGC	6 cut(s)	738, 741, 853, 2148, 2238, 2316
GsaI	CCCAGC	1 cut(s)	2017
GsuI	CTGGAG	2 cut(s)	806, 2418
HaeIII	GGCC	3 cut(s)	406, 2187, 2376
HapII	CCGG	4 cut(s)	1463, 1636, 2252, 2363
HhaI	GCGC	1 cut(s)	1758
Hin6I	GCGC	1 cut(s)	1756
HinP1I	GCGC	1 cut(s)	1756
HincII	GTYRAC	3 cut(s)	64, 436, 1573
HindII	GTYRAC	3 cut(s)	64, 436, 1573
HindIII	AAGCTT	1 cut(s)	976
HpaII	CCGG	4 cut(s)	1463, 1636, 2252, 2363
HphI	GGTGA	4 cut(s)	296, 794, 1829, 2120
Hpy166II	GTNNAC	6 cut(s)	64, 436, 568, 765, 1573, 2099
Hpy188III	TCNNGA	9 cut(s)	305, 600, 1274, 1361, 1798, 1933, 2084, 2209, 2435
Hpy8I	GTNNAC	6 cut(s)	64, 436, 568, 765, 1573, 2099
HpyAV	CCTTC	7 cut(s)	439, 606, 1066, 1257, 1330, 1850, 2072
HpyCH4III	ACNGT	9 cut(s)	123, 536, 862, 871, 1072, 1444, 1561, 2074, 2346
HpyCH4IV	ACGT	2 cut(s)	2101, 2448
HpyF3I	CTNAG	8 cut(s)	396, 660, 903, 1618, 1828, 1877, 2298, 2319
HpySE526I	ACGT	2 cut(s)	2101, 2448
HspAI	GCGC	1 cut(s)	1756
Ksp22I	TGATCA	1 cut(s)	301
KspI	CCGCGG	1 cut(s)	853
Kzo9I	GATC	6 cut(s)	235, 301, 529, 685, 1418, 2110
LguI	GCTCTTC	1 cut(s)	1924
LmnI	GCTCC	5 cut(s)	391, 1477, 2175, 2227, 2363
Lsp1109I	GCAGC	5 cut(s)	727, 749, 2134, 2224, 2327
LweI	GCATC	7 cut(s)	22, 361, 383, 961, 1135, 1144, 2250
MaeI	CTAG	8 cut(s)	194, 627, 984, 1052, 1199, 1224, 1904, 2127
MaeII	ACGT	2 cut(s)	2101, 2448
MaeIII	GTNAC	7 cut(s)	322, 583, 835, 862, 2019, 2068, 2444
MalI	GATC	6 cut(s)	237, 303, 531, 687, 1420, 2112
MboI	GATC	6 cut(s)	235, 301, 529, 685, 1418, 2110
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	388
MlsI	TGGCCA	3 cut(s)	406, 2187, 2376
MluNI	TGGCCA	3 cut(s)	406, 2187, 2376
MlyI	GAGTC	8 cut(s)	431, 591, 1322, 1499, 1621, 1853, 1885, 2428
MmeI	TCCRAC	3 cut(s)	47, 939, 1287
Mox20I	TGGCCA	3 cut(s)	406, 2187, 2376
Mph1103I	ATGCAT	3 cut(s)	376, 995, 2265
MroXI	GAANNNNTTC	1 cut(s)	595
MscI	TGGCCA	3 cut(s)	406, 2187, 2376
MseI	TTAA	4 cut(s)	210, 557, 801, 1749
MslI	CAYNNNNRTG	1 cut(s)	930
Msp20I	TGGCCA	3 cut(s)	406, 2187, 2376
MspA1I	CMGCKG	4 cut(s)	740, 852, 2013, 2147
MspI	CCGG	4 cut(s)	1463, 1636, 2252, 2363
MspR9I	CCNGG	5 cut(s)	488, 824, 1257, 1982, 2363
Mva1269I	GAATGC	1 cut(s)	1919
MvaI	CCWGG	4 cut(s)	488, 824, 1257, 1982
MvnI	CGCG	1 cut(s)	852
NciI	CCSGG	1 cut(s)	2363
NcoI	CCATGG	3 cut(s)	378, 1320, 1512
NdeI	CATATG	3 cut(s)	261, 989, 1997
NdeII	GATC	6 cut(s)	235, 301, 529, 685, 1418, 2110
NheI	GCTAGC	1 cut(s)	1223
NlaIV	GGNNCC	3 cut(s)	828, 1518, 2343
NmuCI	GTSAC	2 cut(s)	583, 835
NsiI	ATGCAT	3 cut(s)	376, 995, 2265
NspI	RCATGY	3 cut(s)	146, 351, 566
PaeI	GCATGC	1 cut(s)	146
PasI	CCCWGGG	1 cut(s)	487
PciI	ACATGT	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	1924
PctI	GAATGC	1 cut(s)	1919
PdmI	GAANNNNTTC	1 cut(s)	595
PfeI	GAWTC	6 cut(s)	1007, 1190, 1597, 2055, 2141, 2429
PflMI	CCANNNNNTGG	1 cut(s)	1987
PkrI	GCNGC	6 cut(s)	739, 742, 854, 2149, 2239, 2317
PleI	GAGTC	8 cut(s)	431, 590, 1321, 1499, 1621, 1852, 1885, 2427
PmaCI	CACGTG	1 cut(s)	2102
PmlI	CACGTG	1 cut(s)	2102
PpsI	GAGTC	8 cut(s)	431, 590, 1321, 1499, 1621, 1852, 1885, 2427
Ppu21I	YACGTR	1 cut(s)	2102
PpuMI	RGGWCCY	1 cut(s)	827
PscI	ACATGT	1 cut(s)	562
PsiI	TTATAA	2 cut(s)	1035, 1808
Psp1406I	AACGTT	1 cut(s)	2448
Psp5II	RGGWCCY	1 cut(s)	827
Psp6I	CCWGG	4 cut(s)	486, 822, 1255, 1980
PspCI	CACGTG	1 cut(s)	2102
PspFI	CCCAGC	1 cut(s)	2013
PspGI	CCWGG	4 cut(s)	486, 822, 1255, 1980
PspN4I	GGNNCC	3 cut(s)	828, 1518, 2343
PspPI	GGNCC	4 cut(s)	52, 185, 827, 2342
PspPPI	RGGWCCY	1 cut(s)	827
PstNI	CAGNNNCTG	2 cut(s)	326, 1706
PsuI	RGATCY	1 cut(s)	235
PvuII	CAGCTG	3 cut(s)	740, 2013, 2147
RsaI	GTAC	3 cut(s)	766, 881, 1030
RsaNI	GTAC	3 cut(s)	765, 880, 1029
RseI	CAYNNNNRTG	1 cut(s)	930
SacII	CCGCGG	1 cut(s)	853
SapI	GCTCTTC	1 cut(s)	1924
SaqAI	TTAA	4 cut(s)	210, 557, 801, 1749
SatI	GCNGC	6 cut(s)	738, 741, 853, 2148, 2238, 2316
Sau3AI	GATC	6 cut(s)	235, 301, 529, 685, 1418, 2110
Sau96I	GGNCC	4 cut(s)	52, 185, 827, 2342
ScaI	AGTACT	1 cut(s)	881
SchI	GAGTC	8 cut(s)	431, 591, 1322, 1499, 1621, 1853, 1885, 2428
ScrFI	CCNGG	5 cut(s)	488, 824, 1257, 1982, 2363
SduI	GDGCHC	1 cut(s)	388
SfaNI	GCATC	7 cut(s)	22, 361, 383, 961, 1135, 1144, 2250
SfcI	CTRYAG	3 cut(s)	666, 1071, 1664
Sfr303I	CCGCGG	1 cut(s)	853
SgrBI	CCGCGG	1 cut(s)	853
SinI	GGWCC	4 cut(s)	52, 185, 827, 2342
SmiMI	CAYNNNNRTG	1 cut(s)	930
SpeI	ACTAGT	1 cut(s)	626
SphI	GCATGC	1 cut(s)	146
SsiI	CCGC	4 cut(s)	94, 850, 852, 2173
SspMI	CTAG	8 cut(s)	194, 627, 984, 1052, 1199, 1224, 1904, 2127
StyD4I	CCNGG	5 cut(s)	486, 822, 1255, 1980, 2361
StyI	CCWWGG	4 cut(s)	378, 1320, 1512, 2377
TaaI	ACNGT	9 cut(s)	123, 536, 862, 871, 1072, 1444, 1561, 2074, 2346
TaiI	ACGT	2 cut(s)	2104, 2451
TaqI	TCGA	4 cut(s)	1331, 1417, 1595, 2427
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	1 cut(s)	855
TfiI	GAWTC	6 cut(s)	1007, 1190, 1597, 2055, 2141, 2429
Tru1I	TTAA	4 cut(s)	210, 557, 801, 1749
Tru9I	TTAA	4 cut(s)	210, 557, 801, 1749
TscAI	CASTG	8 cut(s)	400, 507, 592, 767, 1025, 1075, 1447, 1905
TseFI	GTSAC	2 cut(s)	583, 835
TseI	GCWGC	5 cut(s)	737, 740, 2147, 2237, 2315
Tsp45I	GTSAC	2 cut(s)	583, 835
TspDTI	ATGAA	6 cut(s)	278, 287, 636, 914, 1739, 1899
TspRI	CASTG	8 cut(s)	400, 507, 592, 767, 1025, 1075, 1447, 1905
Van91I	CCANNNNNTGG	1 cut(s)	1987
VpaK11BI	GGWCC	4 cut(s)	52, 185, 827, 2342
XagI	CCTNNNNNAGG	1 cut(s)	600
XapI	RAATTY	9 cut(s)	266, 514, 844, 1133, 1169, 1260, 1343, 1355, 1548
XceI	RCATGY	3 cut(s)	146, 351, 566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1988
XmnI	GAANNNNTTC	1 cut(s)	595
XspI	CTAG	8 cut(s)	194, 627, 984, 1052, 1199, 1224, 1904, 2127
ZrmI	AGTACT	1 cut(s)	881
Zsp2I	ATGCAT	3 cut(s)	376, 995, 2265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.