Rorug04G0076500

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004671
Physical Location & Seq
Reverse (-)
11796346 .. 11804353
8008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0076500.1

Sequence Viewer

Length: 1020 bp
ATGCAGAACCAAAATTCCAATTTTCTCAAGTGGATGCTTCTAGGTTTTAGTAGTACTAATCGAGAAACCAGAGTTAGACATTGGTATGATACAATGGTGAGGAAAAATCTCCTTAACGCGAATCCAGGTGGTCATAGTGCTCAAGTGAAGTTTGTTTATGGGAAGAGGACTAGAGGTGCAACTGATGATCACAGTAATCTATCTGATGTTGCTTCAGTTGCCTTCATTTTTGACTTTTCCATTAGTTTAGGCACAGAGAGTAATTTTGGAATGTGGTTATCTGGGCGATTGATTGCAAGGGTTTCAAGAGTGGTGGATAAGGAAGGTTACAAGGCAAGAAATGCTTCAAGGAGAGTTACATCTTACAACCTGGAATATGGGCTTTTGAACATCAAGCCTGAAGGTTGCTCAGGAGTCATTGGCAGAAGACTCATTGAGGCAGCCAAAATGAGAGCTGGGAGTTACAGTGGAGGAATAAAATGTGACTTGAGTGCACCAAAAGTTGGCGAAGATAGTGACAAGGATTCGTCTGAAAAATCAGAAAGGAGTGACAGTGATAGAGAAACTGAGGGCAAAACTGCAGTTGACATCAAGTTCACACAGAGGAACATTCTAAGGATCTACCCCAAAGGAACACGAGTTACCTCCTCAAATTACCAATCGCATGTTGGGTGGGTGCATGGAGCTCAAATAGTTGTGTTTAATATGCAGGGTGCAAATGATGAGGTTTTTGATCCTAAAAGGACCTTGATAGTGGCAAAGACATTGAAGGTGAAAGCATACGTGGGGAATAAATGGCACTTGGATTTTAGTCAAACACACTTCAATTCGTTCGCCCCACTGACTTCTGCACAAAACTTTGGCGATGAGAAAGCCAGAAAGATTAAGTTAGCCTCGTACAAGGAAAAGGTCTACCCTCAGAATAAGGTGGGGAGTTTCTCAGACATGGAGGAACTTCAACATCTCAATGCCTGGCTTAATGAAGTGAAGTCAAAACTACTGTTAAAAATGGTGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DND1_DSRM

Protein Analysis

339

Amino Acids

38.18

Weight (kDa)

9.69

Isoelectric Point (pI)

29.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC-Y PF00387 196 - 240 6.8e-11 Phosphatidylinositol-specific phospholipase C, Y domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 503
AccI GTMKAC 1 cut(s) 912
AccII CGCG 1 cut(s) 119
AclWI GGATC 2 cut(s) 626, 728
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 2 cut(s) 198, 420
AfaI GTAC 2 cut(s) 55, 899
AfiI CCNNNNNNNGG 1 cut(s) 503
AgsI TTSAA 6 cut(s) 306, 348, 388, 769, 826, 959
AjnI CCWGG 3 cut(s) 124, 369, 971
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 2 cut(s) 455, 686
AluI AGCT 2 cut(s) 455, 686
Alw21I GWGCWC 3 cut(s) 142, 496, 688
Alw44I GTGCAC 1 cut(s) 492
AlwI GGATC 2 cut(s) 626, 728
ApaLI GTGCAC 1 cut(s) 492
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 13
Asp700I GAANNNNTTC 1 cut(s) 343
AspS9I GGNCC 1 cut(s) 744
AsuHPI GGTGA 2 cut(s) 109, 784
AvaII GGWCC 1 cut(s) 744
BaeGI GKGCMC 1 cut(s) 496
BaeI ACNNNNGTAYC 2 cut(s) 81, 114
BanII GRGCYC 1 cut(s) 688
BauI CACGAG 1 cut(s) 636
BbsI GAAGAC 1 cut(s) 433
Bbv12I GWGCWC 3 cut(s) 142, 496, 688
BbvI GCAGC 1 cut(s) 452
BciT130I CCWGG 3 cut(s) 126, 371, 973
BclI TGATCA 1 cut(s) 187
BfaI CTAG 2 cut(s) 41, 171
BfmI CTRYAG 2 cut(s) 579, 1016
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
BmcAI AGTACT 1 cut(s) 55
Bme1390I CCNGG 3 cut(s) 126, 371, 973
Bme18I GGWCC 1 cut(s) 744
BmgT120I GGNCC 1 cut(s) 744
BmrFI CCNGG 3 cut(s) 126, 371, 973
BmsI GCATC 1 cut(s) 24
BpiI GAAGAC 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 409
BpuEI CTTGAG 3 cut(s) 11, 126, 508
BsaAI YACGTR 1 cut(s) 784
BsaXI ACNNNNNCTCC 4 cut(s) 451, 481, 538, 568
Bsc4I CCNNNNNNNGG 1 cut(s) 503
BseBI CCWGG 3 cut(s) 126, 371, 973
BseGI GGATG 1 cut(s) 39
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 4 cut(s) 423, 558, 932, 954
BseRI GAGGAG 1 cut(s) 637
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 1 cut(s) 452
BseYI CCCAGC 1 cut(s) 455
BsgI GTGCAG 1 cut(s) 834
Bsh1236I CGCG 1 cut(s) 119
BsiHKAI GWGCWC 3 cut(s) 142, 496, 688
BslI CCNNNNNNNGG 1 cut(s) 503
Bsp1286I GDGCHC 3 cut(s) 142, 496, 688
Bsp143I GATC 3 cut(s) 187, 618, 733
BspCNI CTCAG 4 cut(s) 422, 559, 931, 953
BspFNI CGCG 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 2 cut(s) 626, 728
BssMI GATC 3 cut(s) 187, 618, 733
BssSI CACGAG 1 cut(s) 636
Bst2BI CACGAG 1 cut(s) 636
Bst2UI CCWGG 3 cut(s) 126, 371, 973
Bst4CI ACNGT 4 cut(s) 194, 467, 554, 1002
Bst6I CTCTTC 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 784
BstDEI CTNAG 5 cut(s) 409, 567, 614, 918, 940
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 3 cut(s) 190, 621, 736
BstMBI GATC 3 cut(s) 187, 618, 733
BstMWI GCNNNNNNNGC 2 cut(s) 218, 341
BstNI CCWGG 3 cut(s) 126, 371, 973
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 3 cut(s) 124, 369, 971
BstSFI CTRYAG 2 cut(s) 579, 1016
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 433
BstX2I RGATCY 1 cut(s) 618
BstYI RGATCY 1 cut(s) 618
BtgZI GCGATG 1 cut(s) 879
BtsCI GGATG 1 cut(s) 39
BtsIMutI CAGTG 3 cut(s) 472, 559, 839
Cfr13I GGNCC 1 cut(s) 744
Csp6I GTAC 2 cut(s) 54, 898
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 3 cut(s) 665, 680, 946
CviJI RGCY 8 cut(s) 382, 397, 443, 455, 686, 875, 893, 976
CviKI_1 RGCY 8 cut(s) 382, 397, 443, 455, 686, 875, 893, 976
CviQI GTAC 2 cut(s) 54, 898
DdeI CTNAG 5 cut(s) 409, 567, 614, 918, 940
DpnI GATC 3 cut(s) 189, 620, 735
DpnII GATC 3 cut(s) 187, 618, 733
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 686
Eco24I GRGCYC 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 744
Eco53kI GAGCTC 1 cut(s) 686
Eco57I CTGAAG 2 cut(s) 198, 420
EcoICRI GAGCTC 1 cut(s) 686
EcoO109I RGGNCCY 1 cut(s) 744
EcoRII CCWGG 3 cut(s) 124, 369, 971
EcoT38I GRGCYC 1 cut(s) 688
FaeI CATG 3 cut(s) 668, 683, 949
FaiI YATR 9 cut(s) 87, 135, 159, 378, 666, 681, 707, 781, 947
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FatI CATG 3 cut(s) 664, 679, 945
FbaI TGATCA 1 cut(s) 187
FblI GTMKAC 1 cut(s) 912
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 688
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 2 cut(s) 41, 171
GluI GCNGC 1 cut(s) 441
GsaI CCCAGC 1 cut(s) 459
Hin1II CATG 3 cut(s) 668, 683, 949
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 4 cut(s) 121, 414, 429, 524
HphI GGTGA 2 cut(s) 109, 784
Hpy166II GTNNAC 4 cut(s) 494, 586, 597, 913
Hpy188I TCNGA 5 cut(s) 205, 532, 541, 921, 943
Hpy188III TCNNGA 3 cut(s) 62, 306, 411
Hpy8I GTNNAC 4 cut(s) 494, 586, 597, 913
HpyAV CCTTC 4 cut(s) 232, 317, 395, 763
HpyCH4III ACNGT 4 cut(s) 194, 467, 554, 1002
HpyCH4IV ACGT 1 cut(s) 783
HpyCH4V TGCA 9 cut(s) 4, 179, 296, 494, 581, 679, 709, 716, 851
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 341
HpyF3I CTNAG 5 cut(s) 409, 567, 614, 918, 940
HpySE526I ACGT 1 cut(s) 783
Hsp92II CATG 3 cut(s) 668, 683, 949
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 3 cut(s) 187, 618, 733
LmnI GCTCC 1 cut(s) 683
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 1 cut(s) 24
MaeI CTAG 2 cut(s) 41, 171
MaeII ACGT 1 cut(s) 783
MaeIII GTNAC 7 cut(s) 326, 355, 461, 482, 515, 548, 640
MalI GATC 3 cut(s) 189, 620, 735
MboI GATC 3 cut(s) 187, 618, 733
MboII GAAGA 3 cut(s) 175, 438, 521
MflI RGATCY 1 cut(s) 618
MhlI GDGCHC 3 cut(s) 142, 496, 688
MluCI AATT 5 cut(s) 13, 19, 262, 652, 826
MlyI GAGTC 2 cut(s) 423, 423
MroXI GAANNNNTTC 1 cut(s) 343
MseI TTAA 5 cut(s) 114, 702, 885, 978, 1004
MslI CAYNNNNRTG 2 cut(s) 84, 966
MspR9I CCNGG 3 cut(s) 126, 371, 973
MvaI CCWGG 3 cut(s) 126, 371, 973
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 218, 341
NdeII GATC 3 cut(s) 187, 618, 733
NlaIII CATG 3 cut(s) 668, 683, 949
NmuCI GTSAC 3 cut(s) 482, 515, 548
NspI RCATGY 1 cut(s) 668
PdmI GAANNNNTTC 1 cut(s) 343
PfeI GAWTC 2 cut(s) 121, 524
PflMI CCANNNNNTGG 1 cut(s) 503
PkrI GCNGC 1 cut(s) 442
PleI GAGTC 2 cut(s) 422, 423
PpsI GAGTC 2 cut(s) 422, 423
Ppu21I YACGTR 1 cut(s) 784
PpuMI RGGWCCY 1 cut(s) 744
Psp124BI GAGCTC 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 744
Psp6I CCWGG 3 cut(s) 124, 369, 971
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 3 cut(s) 124, 369, 971
PspPI GGNCC 1 cut(s) 744
PspPPI RGGWCCY 1 cut(s) 744
PsrI GAACNNNNNNTAC 2 cut(s) 625, 657
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 1 cut(s) 618
RsaI GTAC 2 cut(s) 55, 899
RsaNI GTAC 2 cut(s) 54, 898
RseI CAYNNNNRTG 2 cut(s) 84, 966
SacI GAGCTC 1 cut(s) 688
SaqAI TTAA 5 cut(s) 114, 702, 885, 978, 1004
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 3 cut(s) 187, 618, 733
Sau96I GGNCC 1 cut(s) 744
ScaI AGTACT 1 cut(s) 55
SchI GAGTC 2 cut(s) 423, 423
ScrFI CCNGG 3 cut(s) 126, 371, 973
SduI GDGCHC 3 cut(s) 142, 496, 688
SfaNI GCATC 1 cut(s) 24
SfcI CTRYAG 2 cut(s) 579, 1016
SinI GGWCC 1 cut(s) 744
SmiMI CAYNNNNRTG 2 cut(s) 84, 966
SmlI CTYRAG 3 cut(s) 26, 141, 487
SmoI CTYRAG 3 cut(s) 26, 141, 487
Sse9I AATT 5 cut(s) 13, 19, 262, 652, 826
SspMI CTAG 2 cut(s) 41, 171
SstI GAGCTC 1 cut(s) 688
StyD4I CCNGG 3 cut(s) 124, 369, 971
TaaI ACNGT 4 cut(s) 194, 467, 554, 1002
TaiI ACGT 1 cut(s) 786
TaqI TCGA 1 cut(s) 61
TasI AATT 5 cut(s) 13, 19, 262, 652, 826
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 2 cut(s) 121, 524
Tru1I TTAA 5 cut(s) 114, 702, 885, 978, 1004
Tru9I TTAA 5 cut(s) 114, 702, 885, 978, 1004
TscAI CASTG 3 cut(s) 472, 559, 846
TseFI GTSAC 3 cut(s) 482, 515, 548
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 3 cut(s) 482, 515, 548
TspDTI ATGAA 2 cut(s) 214, 996
TspRI CASTG 3 cut(s) 472, 559, 846
Van91I CCANNNNNTGG 1 cut(s) 503
VneI GTGCAC 1 cut(s) 492
VpaK11BI GGWCC 1 cut(s) 744
XapI RAATTY 1 cut(s) 13
XceI RCATGY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XmiI GTMKAC 1 cut(s) 912
XmnI GAANNNNTTC 1 cut(s) 343
XspI CTAG 2 cut(s) 41, 171
ZrmI AGTACT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.