Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004671

Physical Location & Seq

Genomic Coordinates Forward (+)

11812230 .. 11813306

Gene Structure 1077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0076600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTGAGGCTGTTGTTTCTTTTCTCGTGGAAAGAGTTGGTGACTTCATCATTCAAGAAGGCAGATCCTTGTCCGGAGTTCGCGATCAAGTTGAGCGTGCACATACAGACCTACTATTCATCAAGGGCTTCCTCAAAGATGCAGACGCAAAACGACGAGATAGTGAGGCAATACGCATTTTTGTTGCCAAAATTAGAGATGCTGCTTATGATATGGAGGATGTCATTGAAGCTTTTGTCTTGAAGGTGGATTCCAAGAGGAAAGGAGGTATAAAGAATGTTTTGAAGAGGTTGGGGTGCTTCTTCATTAAAGGAGTTCGTCGTCACAAGATTGGGTCAGAAATTGGGGTAATTACTATCACGATTTCTGATTTGAAGCAGAACTTGCAAACTTATGGTATCAAGGAGATAAGGGATTCCTCTACTTCCCTCCAATTGTGTGAAGGACAACAACTACTGAGGCGAACTTACACTCATGTTATTGATCGTAATGTGGTCGGGGTAGAGGATTCTGTCCATGAATTGGTTGGGCATTTGGTGAAGGAAGAGCATCACCACCGAGTTGTTTCTATTATTGGGATGGGCGGATCTGGGAAGACAACTATTGCTAAACAAGTTTATCATCACAAAGAGGTAACAGACCATTTTGATTGTTTGGCTTGGGTTTGTATATCTCAACAATATCAAGTCAGGGATGTCTTGGAGAGGATTTATGTCAAACTTCTTTGCCCCACAAAAGAGGAGAGGGATGAAATTGCAAAACTGAAGGATGACGAAATACCAGGGAGGCTTTCTCGTCTCCAAAATGAAAAAAAATGTTTGATTGTCCTTGATGACATTTGGAAAAGAGAGACCTGGGACTTTTTGAAGGCTGCATTTGAATGCCATGAAGACTCAAAGAGCAGGATACTACTTACGACACGCAATGAACAAGTAGCTTCGCATGCTGATGAGAACGGTTTTCACTACCGGCCTCCACCACTGACTAAGTCTGAGAGTTGGAAGCTGTTTGAGAAGATTGCAATGAGTGGAAGGAAAGCTGGAATAGGTAGTTTCTCGATTCCACCACACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DND1_DSRM

Protein Analysis

358

Amino Acids

40.91

Weight (kDa)

8.54

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rx_N	PF18052	5 - 88	1.8e-22	Rx N-terminal domain
NB-ARC	PF00931	169 - 344	9.4e-44	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004671)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05950 AT1G05950 AT1G05950 AT1G05950 AT1G05950
fragaria_vesca	FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700 FvH4_4g10700
malus_domestica	MD04G1007700.v1.1
prunus_persica	Prupe.1G191700_v2.0.a1 Prupe.1G191700_v2.0.a1 Prupe.1G191700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0407011
rosa_laevigata	RLG00000008744
rosa_multiflora	Rmu_sc0000600.1_g000013
rosa_roxburghii	Rroxscaffold_5G00351720
rosa_rugosa	Rorug04G0076500 Rorug04G0076600 Rorug04G0076700
rosa_samantha	Rh4AG142000 Rh4BG139200 Rh4CG148600 Rh4DG136200
rosa_wichuraiana	Rw4G011570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccII	CGCG	1 cut(s)	84
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	1 cut(s)	585
AclWI	GGATC	2 cut(s)	60, 595
AcuI	CTGAAG	1 cut(s)	785
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	7 cut(s)	56, 230, 244, 286, 376, 868, 881
AjnI	CCWGG	2 cut(s)	781, 854
AluBI	AGCT	4 cut(s)	233, 938, 1006, 1040
AluI	AGCT	4 cut(s)	233, 938, 1006, 1040
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	803, 845
Alw44I	GTGCAC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	60, 595
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	1 cut(s)	971
ApaLI	GTGCAC	1 cut(s)	99
ApeKI	GCWGC	2 cut(s)	203, 872
AsuHPI	GGTGA	3 cut(s)	53, 545, 550
BaeGI	GKGCMC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	26
BbsI	GAAGAC	2 cut(s)	602, 897
Bbv12I	GWGCWC	1 cut(s)	103
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	190, 859
BccI	CCATC	1 cut(s)	574
BciT130I	CCWGG	2 cut(s)	783, 856
BciVI	GTATCC	1 cut(s)	900
BcoDI	GTCTC	2 cut(s)	803, 845
BfaI	CTAG	1 cut(s)	1075
BfuI	GTATCC	1 cut(s)	900
BisI	GCNGC	2 cut(s)	204, 873
BlsI	GCNGC	2 cut(s)	205, 874
Bme1390I	CCNGG	2 cut(s)	783, 856
BmrFI	CCNGG	2 cut(s)	783, 856
BmsI	GCATC	3 cut(s)	130, 190, 559
BpiI	GAAGAC	2 cut(s)	602, 897
BplI	GAGNNNNNCTC	2 cut(s)	778, 810
Bpu10I	CCTNAGC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	845
BsaJI	CCNNGG	2 cut(s)	782, 855
BsaWI	WCCGGW	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse118I	RCCGGY	1 cut(s)	969
Bse3DI	GCAATG	2 cut(s)	931, 1029
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	783, 856
BseDI	CCNNGG	2 cut(s)	782, 855
BseGI	GGATG	5 cut(s)	226, 585, 700, 754, 775
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	2 cut(s)	931, 1029
BseMII	CTCAG	2 cut(s)	449, 984
BseRI	GAGGAG	1 cut(s)	755
BseSI	GKGCMC	1 cut(s)	103
BseXI	GCAGC	2 cut(s)	190, 859
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	973
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	75, 970
BslFI	GGGAC	1 cut(s)	872
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	2 cut(s)	803, 845
BsmBI	CGTCTC	1 cut(s)	803
BsmFI	GGGAC	1 cut(s)	872
BsmI	GAATGC	1 cut(s)	887
BsnI	GGCC	1 cut(s)	973
Bso31I	GGTCTC	1 cut(s)	845
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	65, 85, 484, 587
Bsp68I	TCGCGA	1 cut(s)	84
BspACI	CCGC	1 cut(s)	585
BspANI	GGCC	1 cut(s)	973
BspCNI	CTCAG	2 cut(s)	450, 985
BspEI	TCCGGA	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	84
BspPI	GGATC	2 cut(s)	60, 595
BspQI	GCTCTTC	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	845
BsrDI	GCAATG	2 cut(s)	931, 1029
BsrFI	RCCGGY	1 cut(s)	969
BssAI	RCCGGY	1 cut(s)	969
BssECI	CCNNGG	2 cut(s)	782, 855
BssMI	GATC	4 cut(s)	65, 85, 484, 587
BssSI	CACGAG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	783, 856
Bst4CI	ACNGT	1 cut(s)	959
Bst6I	CTCTTC	2 cut(s)	281, 540
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	2 cut(s)	99, 945
BstDEI	CTNAG	4 cut(s)	6, 458, 987, 993
BstF5I	GGATG	5 cut(s)	226, 585, 700, 754, 775
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	4 cut(s)	68, 88, 487, 590
BstMAI	GTCTC	2 cut(s)	803, 845
BstMBI	GATC	4 cut(s)	65, 85, 484, 587
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 944
BstNI	CCWGG	2 cut(s)	783, 856
BstNSI	RCATGY	1 cut(s)	947
BstSCI	CCNGG	2 cut(s)	781, 854
BstSLI	GKGCMC	1 cut(s)	103
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	190, 859
BstV2I	GAAGAC	2 cut(s)	602, 897
BstX2I	RGATCY	2 cut(s)	65, 587
BstYI	RGATCY	2 cut(s)	65, 587
BsuI	GTATCC	1 cut(s)	900
BsuRI	GGCC	1 cut(s)	973
BtsCI	GGATG	5 cut(s)	226, 585, 700, 754, 775
BtsIMutI	CAGTG	1 cut(s)	980
BtuMI	TCGCGA	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	99, 945
Cfr10I	RCCGGY	1 cut(s)	969
CseI	GACGC	1 cut(s)	155
CviAII	CATG	4 cut(s)	476, 518, 887, 944
DdeI	CTNAG	4 cut(s)	6, 458, 987, 993
DpnI	GATC	4 cut(s)	67, 87, 486, 589
DpnII	GATC	4 cut(s)	65, 85, 484, 587
Eam1104I	CTCTTC	2 cut(s)	281, 540
EarI	CTCTTC	2 cut(s)	281, 540
EciI	GGCGGA	1 cut(s)	600
Eco31I	GGTCTC	1 cut(s)	845
Eco57I	CTGAAG	1 cut(s)	785
EcoRII	CCWGG	2 cut(s)	781, 854
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	4 cut(s)	479, 521, 890, 947
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	872
FatI	CATG	4 cut(s)	475, 517, 886, 943
Fnu4HI	GCNGC	2 cut(s)	204, 873
FokI	GGATG	5 cut(s)	233, 592, 707, 761, 782
Fsp4HI	GCNGC	2 cut(s)	204, 873
FspBI	CTAG	1 cut(s)	1075
GluI	GCNGC	2 cut(s)	204, 873
HaeIII	GGCC	1 cut(s)	973
HapII	CCGG	2 cut(s)	75, 970
HgaI	GACGC	1 cut(s)	155
Hin1II	CATG	4 cut(s)	479, 521, 890, 947
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	5 cut(s)	251, 416, 509, 893, 1060
HpaII	CCGG	2 cut(s)	75, 970
HphI	GGTGA	3 cut(s)	53, 545, 550
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	3 cut(s)	340, 370, 994
Hpy188III	TCNNGA	6 cut(s)	56, 75, 83, 241, 361, 1057
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	2 cut(s)	159, 324
HpyAV	CCTTC	7 cut(s)	53, 238, 437, 535, 760, 862, 1026
HpyCH4III	ACNGT	1 cut(s)	959
HpyCH4V	TGCA	6 cut(s)	101, 143, 388, 758, 875, 1022
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 944
HpyF3I	CTNAG	4 cut(s)	6, 458, 987, 993
Hsp92II	CATG	4 cut(s)	479, 521, 890, 947
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	4 cut(s)	65, 85, 484, 587
LguI	GCTCTTC	1 cut(s)	540
Lsp1109I	GCAGC	2 cut(s)	190, 859
LweI	GCATC	3 cut(s)	130, 190, 559
MaeI	CTAG	1 cut(s)	1075
MaeIII	GTNAC	3 cut(s)	41, 323, 634
MalI	GATC	4 cut(s)	67, 87, 486, 589
MboI	GATC	4 cut(s)	65, 85, 484, 587
MboII	GAAGA	6 cut(s)	295, 298, 557, 607, 902, 1027
MfeI	CAATTG	1 cut(s)	434
MflI	RGATCY	2 cut(s)	65, 587
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	6 cut(s)	192, 342, 351, 434, 521, 753
MlyI	GAGTC	1 cut(s)	887
MmeI	TCCRAC	1 cut(s)	980
MroI	TCCGGA	1 cut(s)	74
MseI	TTAA	1 cut(s)	309
MslI	CAYNNNNRTG	2 cut(s)	880, 948
MspI	CCGG	2 cut(s)	75, 970
MspR9I	CCNGG	2 cut(s)	783, 856
MunI	CAATTG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	887
MvaI	CCWGG	2 cut(s)	783, 856
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	385, 944
NdeII	GATC	4 cut(s)	65, 85, 484, 587
NlaIII	CATG	4 cut(s)	479, 521, 890, 947
NmuCI	GTSAC	2 cut(s)	41, 323
NruI	TCGCGA	1 cut(s)	84
NspI	RCATGY	1 cut(s)	947
PaeI	GCATGC	1 cut(s)	947
PciSI	GCTCTTC	1 cut(s)	540
PctI	GAATGC	1 cut(s)	887
PfeI	GAWTC	4 cut(s)	251, 416, 509, 1060
PflFI	GACNNNGTC	1 cut(s)	988
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	2 cut(s)	205, 874
PleI	GAGTC	1 cut(s)	887
PpsI	GAGTC	1 cut(s)	887
Psp6I	CCWGG	2 cut(s)	781, 854
PspGI	CCWGG	2 cut(s)	781, 854
PsuI	RGATCY	2 cut(s)	65, 587
PsyI	GACNNNGTC	1 cut(s)	988
RruI	TCGCGA	1 cut(s)	84
RseI	CAYNNNNRTG	2 cut(s)	880, 948
SapI	GCTCTTC	1 cut(s)	540
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	2 cut(s)	204, 873
Sau3AI	GATC	4 cut(s)	65, 85, 484, 587
SchI	GAGTC	1 cut(s)	887
ScrFI	CCNGG	2 cut(s)	783, 856
SduI	GDGCHC	1 cut(s)	103
SfaNI	GCATC	3 cut(s)	130, 190, 559
SmiMI	CAYNNNNRTG	2 cut(s)	880, 948
SphI	GCATGC	1 cut(s)	947
Sse9I	AATT	6 cut(s)	192, 342, 351, 434, 521, 753
SsiI	CCGC	1 cut(s)	585
SspMI	CTAG	1 cut(s)	1075
StyD4I	CCNGG	2 cut(s)	781, 854
TaaI	ACNGT	1 cut(s)	959
TaqI	TCGA	1 cut(s)	1058
TasI	AATT	6 cut(s)	192, 342, 351, 434, 521, 753
TfiI	GAWTC	4 cut(s)	251, 416, 509, 1060
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	987
TseFI	GTSAC	2 cut(s)	41, 323
TseI	GCWGC	2 cut(s)	203, 872
Tsp45I	GTSAC	2 cut(s)	41, 323
TspDTI	ATGAA	8 cut(s)	37, 109, 295, 534, 765, 822, 903, 942
TspRI	CASTG	1 cut(s)	987
Tth111I	GACNNNGTC	1 cut(s)	988
Van91I	CCANNNNNTGG	1 cut(s)	523
VneI	GTGCAC	1 cut(s)	99
XceI	RCATGY	1 cut(s)	947
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XspI	CTAG	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.