Rh4AG142000

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
36018128 .. 36029189
11062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG142000.1

Sequence Viewer

Length: 1857 bp
ATGGTTGCTTCGGATATATGTCCAACCGAGGATGCCGTTCAGGCTTTTTTGGACCACTTGGTTGACCCAATACTTCCAGCAAAATCTTCTCTGCGGGATACCCCATCACTCTCTCAACAGCAGTCAGTTGCAAAACAGGTGCATGCTGTTGTGCTACTATACAATTACTACCACAGAAAGCAATGTCCAAAGCTAGAGGTTTTGTGTTTTAATTCGTTTTGCAAGTTGGTTTTGGATCTGAAACCAGCCTTGCTAGCTCATATGAAATTTATGAAAAGGTCAGGTGATACTGAATTGGTTGATCAGGAGAAACAATTTTCAGTTACTGAAAGAACAATAATGGAAGCATGTCAAATATCTACAAGTTTAGATGCATCCATGGGTGCTCCAAACACTGAGGGATGGCCAATTTCCAAAGTTACAGTTCTTTTAGTTGACTCCAAGAAGGAGAACTGCTATTTGCAATTCAGTTCCAATTCCATGACCCAGGGGGTTTGGTCAGTGATTGATAAAAATTTGGAGGTCAGAGATCACAGTTCAGAAGATACAAGGGGGTTAAAACATGTAAACAAAAGCAAAAGAGTCACTGGAAAACCTTCAAGAGGAGAACCAAGGATTGATGAAACTAGTTGTCAAAAACTGGCATATTCAGCAATTACTGAGGCTACAGGTATTAGTCAAAATGATCTTCTTGTTTTGGAAAGCCATGTCGTATTTTCGGATAGTAAAGAAAAGGCAGCTGCTTGTTTTTTTATAGTTCAGTGTACCCAATCAGGCAAGGGTGATATTCAGCTTCCTATTAAAGATGTTATTGACAGCCTCCAGGGTCCTCTGGTCACAAAGAATTCCCGTGGCTGGACAGTTACAACAGTTGTTGAGTACTTCCATGTGCTTCCTTATGCTGCAATTTTGTCCGACTGGTTTCATAGGAGAGAATTCTCAAATGGTTTGAAAGATTCAAGGCTAGGAGCCGGAAATGTAAATGTGGCTAGCCCTAAAAGGACCGAAACACCTTCCAAACCAGGAATTTGCAAAAATCAAGAGAAGTCTCATGTAATTGATGTTGTGATAGAGGATCTTGGAAGCAACACAAAAAATTCTGAACCCAAATCATGGGAGCAAAAAGATAGCAGTGGATGTTGCAAGATAGACCTGGCTCATGCTTTCAATGGGTCTCAGGAAATGGAGTTGGAGGGGTCTTCCATGGCTGCCTCGAAGAAGGAAAAAATTTGTAAGAAAATTTCAAGTCCCGTTCAAGTCAGCCACCAAGATGACATGCATTCCTGTATCGAAAGTGAAAAGCCCAAAACCCAAGACAAGTTGTCTCATGTAAATTGCGTCAGGATAAAGGATATTGGGAACAGCATAAGCAGTTCTACGCCTCGATCATATAAGCAGAAAGATACCACTGTATATAAAAATACAAGTCCTGCTGAAGCTTCCAATGGGCCTCAGAAATTGTGCATAGATGACTGTTCCATGGTTCCCTTGCAGAATGTAGATAGCTGTGAGAAAATTTCAAGCACCATTCAAGTTGTCAATCAGCAAAAAAAGATTTCCTCGATTCGCTCTGAACTAAATGGCTCAGTAAGTAATACGAAGGTTGAGACTGTGAACCAGACAAGTCAATCCCTTACTGACAAGCTACAGATTAGTATAGCTTCAAAAGAACACATCTTGTCAGAAACTGCTTTGAAAGTTCTTATGAAAAAAAGGAATGAGCTGTCTATTAAGAAGCGCAATATACAGGATGAGCTTGCTCGGTGTGAAAAAGATATCCAGACAATTATAAATGATCTACAAATGCACAAGAAAGAATCCAATCATGTCAGCTCTTGTCTGTTAAATCCACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

618

Amino Acids

68.56

Weight (kDa)

8.12

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7913 PF25500 6 - 124 2.8e-55 Domain of unknown function (DUF7913)
DUF7915 PF25502 162 - 310 1.6e-62 Domain of unknown function (DUF7915)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1790
AccB7I CCANNNNNTGG 1 cut(s) 1113
AciI CCGC 1 cut(s) 94
AclWI GGATC 2 cut(s) 243, 1083
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 9 cut(s) 266, 514, 844, 935, 1026, 1096, 1227, 1239, 1515
AcuI CTGAAG 1 cut(s) 1455
AfaI GTAC 2 cut(s) 766, 881
AfiI CCNNNNNNNGG 3 cut(s) 602, 855, 1113
AflIII ACRYGT 1 cut(s) 562
AhdI GACNNNNNGTC 1 cut(s) 1321
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 4 cut(s) 486, 822, 1021, 1152
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 4 cut(s) 1053, 1179, 1329, 1601
AlwI GGATC 2 cut(s) 243, 1083
AlwNI CAGNNNCTG 2 cut(s) 326, 1688
AoxI GGCC 2 cut(s) 404, 1448
ApeKI GCWGC 4 cut(s) 737, 740, 902, 1208
ApoI RAATTY 9 cut(s) 266, 514, 844, 935, 1026, 1096, 1227, 1239, 1515
Asp700I GAANNNNTTC 1 cut(s) 595
AspLEI GCGC 1 cut(s) 1740
AspS9I GGNCC 4 cut(s) 52, 827, 1002, 1448
AsuHPI GGTGA 2 cut(s) 296, 794
AsuNHI GCTAGC 2 cut(s) 253, 989
AvaII GGWCC 3 cut(s) 52, 827, 1002
BaeI ACNNNNGTAYC 2 cut(s) 1395, 1428
BalI TGGCCA 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 1191
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 4 cut(s) 727, 749, 889, 1195
BccI CCATC 2 cut(s) 112, 396
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 4 cut(s) 488, 824, 1023, 1154
BciVI GTATCC 1 cut(s) 91
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 4 cut(s) 1053, 1179, 1329, 1601
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 5 cut(s) 194, 254, 627, 965, 990
BfmI CTRYAG 2 cut(s) 666, 1646
BfuI GTATCC 1 cut(s) 91
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 4 cut(s) 738, 741, 903, 1209
BlsI GCNGC 4 cut(s) 739, 742, 904, 1210
BmcAI AGTACT 1 cut(s) 881
Bme1390I CCNGG 4 cut(s) 488, 824, 1023, 1154
Bme18I GGWCC 3 cut(s) 52, 827, 1002
BmeRI GACNNNNNGTC 1 cut(s) 1321
BmgT120I GGNCC 4 cut(s) 52, 827, 1002, 1448
BmiI GGNNCC 3 cut(s) 828, 970, 1485
BmrFI CCNGG 4 cut(s) 488, 824, 1023, 1154
BmsI GCATC 3 cut(s) 22, 361, 383
BmtI GCTAGC 2 cut(s) 257, 993
BpiI GAAGAC 1 cut(s) 1191
BpmI CTGGAG 1 cut(s) 806
BsaI GGTCTC 1 cut(s) 1179
BsaJI CCNNGG 9 cut(s) 27, 378, 486, 487, 611, 823, 850, 1203, 1479
Bsc4I CCNNNNNNNGG 3 cut(s) 602, 855, 1113
Bse1I ACTGG 3 cut(s) 592, 645, 923
Bse3DI GCAATG 1 cut(s) 188
BseBI CCWGG 4 cut(s) 488, 824, 1023, 1154
BseDI CCNNGG 9 cut(s) 27, 378, 486, 487, 611, 823, 850, 1203, 1479
BseGI GGATG 5 cut(s) 37, 374, 407, 1142, 1756
BseLI CCNNNNNNNGG 3 cut(s) 602, 855, 1113
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 5 cut(s) 387, 651, 1190, 1466, 1599
BseNI ACTGG 3 cut(s) 592, 645, 923
BseRI GAGGAG 1 cut(s) 618
BseXI GCAGC 4 cut(s) 727, 749, 889, 1195
BshFI GGCC 2 cut(s) 406, 1450
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 1 cut(s) 972
BslFI GGGAC 1 cut(s) 1233
BslI CCNNNNNNNGG 3 cut(s) 602, 855, 1113
BsmAI GTCTC 4 cut(s) 1053, 1179, 1329, 1601
BsmFI GGGAC 1 cut(s) 1233
BsmI GAATGC 1 cut(s) 1279
BsnI GGCC 2 cut(s) 406, 1450
Bso31I GGTCTC 1 cut(s) 1179
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 7 cut(s) 235, 301, 529, 685, 1075, 1385, 1795
Bsp19I CCATGG 3 cut(s) 378, 1203, 1479
BspACI CCGC 1 cut(s) 94
BspANI GGCC 2 cut(s) 406, 1450
BspCNI CTCAG 5 cut(s) 388, 652, 1189, 1465, 1598
BspLI GGNNCC 3 cut(s) 828, 970, 1485
BspOI GCTAGC 2 cut(s) 257, 993
BspPI GGATC 2 cut(s) 243, 1083
BspTNI GGTCTC 1 cut(s) 1179
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 3 cut(s) 592, 645, 923
BssECI CCNNGG 9 cut(s) 27, 378, 486, 487, 611, 823, 850, 1203, 1479
BssMI GATC 7 cut(s) 235, 301, 529, 685, 1075, 1385, 1795
BssT1I CCWWGG 4 cut(s) 378, 611, 1203, 1479
Bst2UI CCWGG 4 cut(s) 488, 824, 1023, 1154
Bst4CI ACNGT 7 cut(s) 424, 536, 862, 871, 1411, 1475, 1612
BstC8I GCNNGC 4 cut(s) 144, 255, 991, 1758
BstDEI CTNAG 5 cut(s) 396, 660, 1176, 1452, 1585
BstDSI CCRYGG 4 cut(s) 378, 850, 1203, 1479
BstENI CCTNNNNNAGG 1 cut(s) 600
BstF5I GGATG 5 cut(s) 37, 374, 407, 1142, 1756
BstHHI GCGC 1 cut(s) 1740
BstKTI GATC 7 cut(s) 238, 304, 532, 688, 1078, 1388, 1798
BstMAI GTCTC 4 cut(s) 1053, 1179, 1329, 1601
BstMBI GATC 7 cut(s) 235, 301, 529, 685, 1075, 1385, 1795
BstMWI GCNNNNNNNGC 3 cut(s) 41, 254, 650
BstNI CCWGG 4 cut(s) 488, 824, 1023, 1154
BstNSI RCATGY 4 cut(s) 146, 351, 566, 1279
BstSCI CCNGG 4 cut(s) 486, 822, 1021, 1152
BstSFI CTRYAG 2 cut(s) 666, 1646
BstV1I GCAGC 4 cut(s) 727, 749, 889, 1195
BstV2I GAAGAC 1 cut(s) 1191
BstX2I RGATCY 2 cut(s) 235, 1075
BstYI RGATCY 2 cut(s) 235, 1075
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 2 cut(s) 406, 1450
BtgI CCRYGG 4 cut(s) 378, 850, 1203, 1479
BtsCI GGATG 5 cut(s) 37, 374, 407, 1142, 1756
BtsI GCAGTG 1 cut(s) 1138
BtsIMutI CAGTG 6 cut(s) 393, 507, 585, 767, 1138, 1407
Cac8I GCNNGC 4 cut(s) 144, 255, 991, 1758
CaiI CAGNNNCTG 2 cut(s) 326, 1688
CfoI GCGC 1 cut(s) 1740
Cfr13I GGNCC 4 cut(s) 52, 827, 1002, 1448
CseI GACGC 1 cut(s) 1327
Csp6I GTAC 2 cut(s) 765, 880
CviQI GTAC 2 cut(s) 765, 880
DdeI CTNAG 5 cut(s) 396, 660, 1176, 1452, 1585
DpnI GATC 7 cut(s) 237, 303, 531, 687, 1077, 1387, 1797
DpnII GATC 7 cut(s) 235, 301, 529, 685, 1075, 1385, 1795
DriI GACNNNNNGTC 1 cut(s) 1321
EaeI YGGCCR 1 cut(s) 404
Eam1105I GACNNNNNGTC 1 cut(s) 1321
Eco130I CCWWGG 4 cut(s) 378, 611, 1203, 1479
Eco31I GGTCTC 1 cut(s) 1179
Eco32I GATATC 1 cut(s) 1777
Eco47I GGWCC 3 cut(s) 52, 827, 1002
Eco57I CTGAAG 1 cut(s) 1455
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 827
EcoRI GAATTC 2 cut(s) 844, 935
EcoRII CCWGG 4 cut(s) 486, 822, 1021, 1152
EcoRV GATATC 1 cut(s) 1777
EcoT14I CCWWGG 4 cut(s) 378, 611, 1203, 1479
EcoT22I ATGCAT 2 cut(s) 376, 1281
ErhI CCWWGG 4 cut(s) 378, 611, 1203, 1479
FaqI GGGAC 1 cut(s) 1233
FauI CCCGC 1 cut(s) 87
FauNDI CATATG 1 cut(s) 261
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 4 cut(s) 738, 741, 903, 1209
FokI GGATG 5 cut(s) 44, 361, 414, 1149, 1763
Fsp4HI GCNGC 4 cut(s) 738, 741, 903, 1209
FspBI CTAG 5 cut(s) 194, 254, 627, 965, 990
GlaI GCGC 1 cut(s) 1739
GluI GCNGC 4 cut(s) 738, 741, 903, 1209
GsuI CTGGAG 1 cut(s) 806
HaeIII GGCC 2 cut(s) 406, 1450
HapII CCGG 1 cut(s) 972
HgaI GACGC 1 cut(s) 1327
HhaI GCGC 1 cut(s) 1740
Hin6I GCGC 1 cut(s) 1738
HinP1I GCGC 1 cut(s) 1738
HincII GTYRAC 2 cut(s) 64, 436
HindII GTYRAC 2 cut(s) 64, 436
HindIII AAGCTT 1 cut(s) 1437
HinfI GANTC 5 cut(s) 437, 582, 956, 1564, 1817
HpaII CCGG 1 cut(s) 972
HphI GGTGA 2 cut(s) 296, 794
Hpy166II GTNNAC 5 cut(s) 64, 436, 568, 765, 1615
Hpy188III TCNNGA 6 cut(s) 305, 600, 1040, 1178, 1342, 1780
Hpy8I GTNNAC 5 cut(s) 64, 436, 568, 765, 1615
HpyAV CCTTC 5 cut(s) 439, 606, 1023, 1213, 1594
HpyCH4III ACNGT 7 cut(s) 424, 536, 862, 871, 1411, 1475, 1612
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 254, 650
HpyF3I CTNAG 5 cut(s) 396, 660, 1176, 1452, 1585
HspAI GCGC 1 cut(s) 1738
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 7 cut(s) 235, 301, 529, 685, 1075, 1385, 1795
LmnI GCTCC 3 cut(s) 391, 968, 1117
Lsp1109I GCAGC 4 cut(s) 727, 749, 889, 1195
LweI GCATC 3 cut(s) 22, 361, 383
MaeI CTAG 5 cut(s) 194, 254, 627, 965, 990
MaeIII GTNAC 5 cut(s) 322, 418, 583, 835, 862
MalI GATC 7 cut(s) 237, 303, 531, 687, 1077, 1387, 1797
MboI GATC 7 cut(s) 235, 301, 529, 685, 1075, 1385, 1795
MboII GAAGA 5 cut(s) 78, 554, 680, 1191, 1228
MflI RGATCY 2 cut(s) 235, 1075
MhlI GDGCHC 1 cut(s) 388
MlsI TGGCCA 1 cut(s) 406
MluNI TGGCCA 1 cut(s) 406
MlyI GAGTC 2 cut(s) 431, 591
MmeI TCCRAC 3 cut(s) 47, 939, 1170
Mox20I TGGCCA 1 cut(s) 406
Mph1103I ATGCAT 2 cut(s) 376, 1281
MroXI GAANNNNTTC 1 cut(s) 595
MscI TGGCCA 1 cut(s) 406
MseI TTAA 5 cut(s) 210, 557, 801, 1731, 1844
MslI CAYNNNNRTG 1 cut(s) 1269
Msp20I TGGCCA 1 cut(s) 406
MspA1I CMGCKG 1 cut(s) 740
MspI CCGG 1 cut(s) 972
MspR9I CCNGG 4 cut(s) 488, 824, 1023, 1154
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 4 cut(s) 488, 824, 1023, 1154
MwoI GCNNNNNNNGC 3 cut(s) 41, 254, 650
NcoI CCATGG 3 cut(s) 378, 1203, 1479
NdeI CATATG 1 cut(s) 261
NdeII GATC 7 cut(s) 235, 301, 529, 685, 1075, 1385, 1795
NheI GCTAGC 2 cut(s) 253, 989
NlaIV GGNNCC 3 cut(s) 828, 970, 1485
NmuCI GTSAC 2 cut(s) 583, 835
NsiI ATGCAT 2 cut(s) 376, 1281
NspI RCATGY 4 cut(s) 146, 351, 566, 1279
PaeI GCATGC 1 cut(s) 146
PasI CCCWGGG 1 cut(s) 487
PciI ACATGT 1 cut(s) 562
PctI GAATGC 1 cut(s) 1279
PdmI GAANNNNTTC 1 cut(s) 595
PfeI GAWTC 3 cut(s) 956, 1564, 1817
PflMI CCANNNNNTGG 1 cut(s) 1113
PkrI GCNGC 4 cut(s) 739, 742, 904, 1210
PleI GAGTC 2 cut(s) 431, 590
PpsI GAGTC 2 cut(s) 431, 590
PpuMI RGGWCCY 1 cut(s) 827
PscI ACATGT 1 cut(s) 562
PsiI TTATAA 1 cut(s) 1790
Psp5II RGGWCCY 1 cut(s) 827
Psp6I CCWGG 4 cut(s) 486, 822, 1021, 1152
PspGI CCWGG 4 cut(s) 486, 822, 1021, 1152
PspN4I GGNNCC 3 cut(s) 828, 970, 1485
PspPI GGNCC 4 cut(s) 52, 827, 1002, 1448
PspPPI RGGWCCY 1 cut(s) 827
PstNI CAGNNNCTG 2 cut(s) 326, 1688
PsuI RGATCY 2 cut(s) 235, 1075
PvuII CAGCTG 1 cut(s) 740
RsaI GTAC 2 cut(s) 766, 881
RsaNI GTAC 2 cut(s) 765, 880
RseI CAYNNNNRTG 1 cut(s) 1269
SaqAI TTAA 5 cut(s) 210, 557, 801, 1731, 1844
SatI GCNGC 4 cut(s) 738, 741, 903, 1209
Sau3AI GATC 7 cut(s) 235, 301, 529, 685, 1075, 1385, 1795
Sau96I GGNCC 4 cut(s) 52, 827, 1002, 1448
ScaI AGTACT 1 cut(s) 881
SchI GAGTC 2 cut(s) 431, 591
ScrFI CCNGG 4 cut(s) 488, 824, 1023, 1154
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 3 cut(s) 22, 361, 383
SfcI CTRYAG 2 cut(s) 666, 1646
SinI GGWCC 3 cut(s) 52, 827, 1002
SmiMI CAYNNNNRTG 1 cut(s) 1269
SpeI ACTAGT 1 cut(s) 626
SphI GCATGC 1 cut(s) 146
SsiI CCGC 1 cut(s) 94
SspMI CTAG 5 cut(s) 194, 254, 627, 965, 990
StyD4I CCNGG 4 cut(s) 486, 822, 1021, 1152
StyI CCWWGG 4 cut(s) 378, 611, 1203, 1479
TaaI ACNGT 7 cut(s) 424, 536, 862, 871, 1411, 1475, 1612
TaqI TCGA 4 cut(s) 1214, 1290, 1384, 1562
TaqII GACCGA 1 cut(s) 1019
TatI WGTACW 1 cut(s) 879
TfiI GAWTC 3 cut(s) 956, 1564, 1817
Tru1I TTAA 5 cut(s) 210, 557, 801, 1731, 1844
Tru9I TTAA 5 cut(s) 210, 557, 801, 1731, 1844
TscAI CASTG 6 cut(s) 400, 507, 592, 767, 1138, 1414
TseFI GTSAC 2 cut(s) 583, 835
TseI GCWGC 4 cut(s) 737, 740, 902, 1208
Tsp45I GTSAC 2 cut(s) 583, 835
TspDTI ATGAA 5 cut(s) 278, 287, 636, 914, 1721
TspRI CASTG 6 cut(s) 400, 507, 592, 767, 1138, 1414
Van91I CCANNNNNTGG 1 cut(s) 1113
VpaK11BI GGWCC 3 cut(s) 52, 827, 1002
XagI CCTNNNNNAGG 1 cut(s) 600
XapI RAATTY 9 cut(s) 266, 514, 844, 935, 1026, 1096, 1227, 1239, 1515
XceI RCATGY 4 cut(s) 146, 351, 566, 1279
XmnI GAANNNNTTC 1 cut(s) 595
XspI CTAG 5 cut(s) 194, 254, 627, 965, 990
ZrmI AGTACT 1 cut(s) 881
Zsp2I ATGCAT 2 cut(s) 376, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.