Rh4DG136200

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
27092784 .. 27104964
12181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG136200.1

Sequence Viewer

Length: 1809 bp
ATGGTTGCTTCGGATATATGTCCAACCGAGGATGCCGTTCAGGCTTTTTTGGACCACTTGGTTGACCCAATACTTCCAGCAAAATCTTCTCTGCGGGATACCCCATCGCTCTCTCAACAGCAGTCAGTTGCAAAACAGGTGCATGCTGTTGTGCTACTATACAATTACTACCACAGAAAGCAATGTCCAAAGCTAGAGGTTTTGTGTTTTAATTCGTTTTGCAAGTTGGTTTTGGATCTGAAACCAGCCTTGCTAGCTCATATGAAATTTATGAAAGGGTCAGGTGATACTGAATTAGTTGATCAGGAGAAACAACTTTCAGTTACCGAAAGAACAATAATGGAAGCATGTCAAATATCTACAAGTTTAGATGCATCCATGGGTGCTCCAAACACTGAGGGATGGCCAATTTCCAAAGTTACAGTTCTTTTAGTTGACTCCAAGAAGGAGAACTGCTATTTGCAATTCAGTTCCAATTCCATGACCCAGGGGGTTTGGTCAGTGATTGATAAAAATTTGGAGGTCAGAGATCACAGTTCAGAAGACACAAGGGGGTTAAAACATGTAAACAAAAGCAAAAGAGTCACTGGAAAACCTTCAAGAGGAGAACCAAGGATTGATGAAACTTGTTGTCAAAAACTGGCATATTCAGCAATTACTGAGGCTACAGGTATTAGTCAAAATGATCTTCTTGTTTTGGAAAGCCATGTTGTATTTTCGGATAGTAAAGAAAAGGCAGCTGCTTGTTTTTTTATAGTTCAGTGTACCCAATCAGGCAAGGGTGATATTCAGCTTCCTATTAAAGATGTTATTGACAGCCTCCAGGGTCCTCTGGTCACAAAGAATTCCCGCAGCTGGACAGTTACAACAGTTGTTGAGTACTTCCATGTGCTTCCTTATGCTGAGATTTTGTCTGACTGGTTTCATAGGAGAGAATTCTCAAATGGTTTGAAAGATTCTGAACCCAAACCAGGAATTTGCAAAAATCAAGAGAAGTCTCATGTAATTGATGTTGTGATAGAGGATCTTGGAAGCAACACAAAAAATTCTGAACCCAAATCATGGAAGCAAAAAGATAGCAGTGGATGTTGCAAGATAGATCTGGCTCATGCTTTCAATGGGTCTCAGGAAATGGAGTTGGAGGGGTCTTCCATGGTTGCCTCGAAGAAGGAAAAAATTTGTAAGAAAATTTCAAGTCCCGTTCAAGTTGTCAGCCACCAAGATGACATGCATTCCTGTATCGAAAGTGAAAAGCCCAAAACCCAAGACAAGTTGTCTCATGTAAATTGCGTCAGGACAAAGGATATTGGGAATAGCATAAGCAGTTCTACGCCTCGATCATATAAGCAGAAAGATACCACTGTATATAAAAATACAAGCCCTGCTGAAGCTTCCAATGGGCCTCAGAAATTGTGCATAGATGATTGTTCCATGGTTCCCTTGCAGAATGTAGAAAGCTGTGAGAAAATTTCAAGCACCATTCAAGTTGTCAATCAGCAACAAAAGATTTCCTCGATTCGCTCTGAACTAAATGGCTCAGTAAGTAATATGAAGGTTGAGACTGTGAACCGGACAAGTCAATCCCTTACTGACAAGCTACAGATTAGTATAGCTTCAAAAGAACACATCTTGTCAGAAACTGCTTTGAAAGTTCTTATGAAAAAAAGGAATGAGCTGTCTATTAAGAAGCGCAATATAGAGGATGAGCTTGCTCGGTGTGAAAAAGATATCCAGACAATTATAAATGATCTACAAATGCACAAGAAAGAATCCAATCATGTCAGCTCCTGTCTATTAAACCCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

602

Amino Acids

67.01

Weight (kDa)

7.2

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7913 PF25500 6 - 124 3.1e-55 Domain of unknown function (DUF7913)
DUF7915 PF25502 162 - 310 3e-63 Domain of unknown function (DUF7915)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1742
AccB7I CCANNNNNTGG 1 cut(s) 1062
AciI CCGC 2 cut(s) 94, 850
AclWI GGATC 2 cut(s) 243, 1032
AcoI YGGCCR 1 cut(s) 404
AcsI RAATTY 9 cut(s) 266, 514, 844, 935, 975, 1045, 1176, 1188, 1467
AcuI CTGAAG 1 cut(s) 1407
AfaI GTAC 2 cut(s) 766, 881
AfiI CCNNNNNNNGG 4 cut(s) 602, 855, 971, 1062
AflIII ACRYGT 1 cut(s) 562
AgsI TTSAA 9 cut(s) 600, 952, 1117, 1194, 1205, 1473, 1484, 1617, 1648
AhdI GACNNNNNGTC 1 cut(s) 1273
AjnI CCWGG 3 cut(s) 486, 822, 970
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 4 cut(s) 1002, 1128, 1281, 1553
AlwI GGATC 2 cut(s) 243, 1032
AlwNI CAGNNNCTG 2 cut(s) 1640, 1788
AoxI GGCC 2 cut(s) 404, 1400
ApeKI GCWGC 3 cut(s) 737, 740, 852
ApoI RAATTY 9 cut(s) 266, 514, 844, 935, 975, 1045, 1176, 1188, 1467
Asp700I GAANNNNTTC 1 cut(s) 595
AspLEI GCGC 1 cut(s) 1692
AspS9I GGNCC 3 cut(s) 52, 827, 1400
AsuHPI GGTGA 2 cut(s) 296, 794
AsuNHI GCTAGC 1 cut(s) 253
AvaII GGWCC 2 cut(s) 52, 827
BaeI ACNNNNGTAYC 2 cut(s) 1347, 1380
BalI TGGCCA 1 cut(s) 406
BbsI GAAGAC 2 cut(s) 549, 1140
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 3 cut(s) 727, 749, 864
BccI CCATC 2 cut(s) 112, 396
BceAI ACGGC 1 cut(s) 20
BciT130I CCWGG 3 cut(s) 488, 824, 972
BciVI GTATCC 1 cut(s) 91
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 4 cut(s) 1002, 1128, 1281, 1553
BfaI CTAG 2 cut(s) 194, 254
BfmI CTRYAG 2 cut(s) 666, 1598
BfuI GTATCC 1 cut(s) 91
BglI GCCNNNNNGGC 1 cut(s) 41
BglII AGATCT 1 cut(s) 1099
BisI GCNGC 3 cut(s) 738, 741, 853
BlsI GCNGC 3 cut(s) 739, 742, 854
BmcAI AGTACT 1 cut(s) 881
Bme1390I CCNGG 3 cut(s) 488, 824, 972
Bme18I GGWCC 2 cut(s) 52, 827
BmeRI GACNNNNNGTC 1 cut(s) 1273
BmgT120I GGNCC 3 cut(s) 52, 827, 1400
BmiI GGNNCC 2 cut(s) 828, 1437
BmrFI CCNGG 3 cut(s) 488, 824, 972
BmsI GCATC 3 cut(s) 22, 361, 383
BmtI GCTAGC 1 cut(s) 257
BpiI GAAGAC 2 cut(s) 549, 1140
BpmI CTGGAG 1 cut(s) 806
BsaI GGTCTC 1 cut(s) 1128
BsaJI CCNNGG 8 cut(s) 27, 378, 486, 487, 611, 823, 1152, 1431
BsaWI WCCGGW 1 cut(s) 1569
Bsc4I CCNNNNNNNGG 4 cut(s) 602, 855, 971, 1062
Bse1I ACTGG 3 cut(s) 592, 645, 923
Bse3DI GCAATG 1 cut(s) 188
BseBI CCWGG 3 cut(s) 488, 824, 972
BseDI CCNNGG 8 cut(s) 27, 378, 486, 487, 611, 823, 1152, 1431
BseGI GGATG 5 cut(s) 37, 374, 407, 1091, 1708
BseLI CCNNNNNNNGG 4 cut(s) 602, 855, 971, 1062
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 6 cut(s) 387, 651, 894, 1139, 1418, 1551
BseNI ACTGG 3 cut(s) 592, 645, 923
BseRI GAGGAG 1 cut(s) 618
BseXI GCAGC 3 cut(s) 727, 749, 864
BshFI GGCC 2 cut(s) 406, 1402
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 1 cut(s) 1570
BslFI GGGAC 1 cut(s) 1182
BslI CCNNNNNNNGG 4 cut(s) 602, 855, 971, 1062
BsmAI GTCTC 4 cut(s) 1002, 1128, 1281, 1553
BsmFI GGGAC 1 cut(s) 1182
BsmI GAATGC 1 cut(s) 1231
BsnI GGCC 2 cut(s) 406, 1402
Bso31I GGTCTC 1 cut(s) 1128
Bsp1286I GDGCHC 1 cut(s) 388
Bsp143I GATC 8 cut(s) 235, 301, 529, 685, 1024, 1099, 1337, 1747
Bsp19I CCATGG 3 cut(s) 378, 1152, 1431
BspACI CCGC 2 cut(s) 94, 850
BspANI GGCC 2 cut(s) 406, 1402
BspCNI CTCAG 6 cut(s) 388, 652, 895, 1138, 1417, 1550
BspLI GGNNCC 2 cut(s) 828, 1437
BspOI GCTAGC 1 cut(s) 257
BspPI GGATC 2 cut(s) 243, 1032
BspTNI GGTCTC 1 cut(s) 1128
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 3 cut(s) 592, 645, 923
BssECI CCNNGG 8 cut(s) 27, 378, 486, 487, 611, 823, 1152, 1431
BssMI GATC 8 cut(s) 235, 301, 529, 685, 1024, 1099, 1337, 1747
BssT1I CCWWGG 4 cut(s) 378, 611, 1152, 1431
Bst2UI CCWGG 3 cut(s) 488, 824, 972
Bst4CI ACNGT 6 cut(s) 424, 536, 862, 871, 1363, 1564
BstC8I GCNNGC 3 cut(s) 144, 255, 1710
BstDEI CTNAG 6 cut(s) 396, 660, 903, 1125, 1404, 1537
BstDSI CCRYGG 3 cut(s) 378, 1152, 1431
BstENI CCTNNNNNAGG 1 cut(s) 600
BstF5I GGATG 5 cut(s) 37, 374, 407, 1091, 1708
BstHHI GCGC 1 cut(s) 1692
BstKTI GATC 8 cut(s) 238, 304, 532, 688, 1027, 1102, 1340, 1750
BstMAI GTCTC 4 cut(s) 1002, 1128, 1281, 1553
BstMBI GATC 8 cut(s) 235, 301, 529, 685, 1024, 1099, 1337, 1747
BstMWI GCNNNNNNNGC 3 cut(s) 41, 254, 650
BstNI CCWGG 3 cut(s) 488, 824, 972
BstNSI RCATGY 4 cut(s) 146, 351, 566, 1231
BstSCI CCNGG 3 cut(s) 486, 822, 970
BstSFI CTRYAG 2 cut(s) 666, 1598
BstV1I GCAGC 3 cut(s) 727, 749, 864
BstV2I GAAGAC 2 cut(s) 549, 1140
BstX2I RGATCY 3 cut(s) 235, 1024, 1099
BstYI RGATCY 3 cut(s) 235, 1024, 1099
BsuI GTATCC 1 cut(s) 91
BsuRI GGCC 2 cut(s) 406, 1402
BtgI CCRYGG 3 cut(s) 378, 1152, 1431
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 5 cut(s) 37, 374, 407, 1091, 1708
BtsI GCAGTG 1 cut(s) 1087
BtsIMutI CAGTG 6 cut(s) 393, 507, 585, 767, 1087, 1359
Cac8I GCNNGC 3 cut(s) 144, 255, 1710
CaiI CAGNNNCTG 2 cut(s) 1640, 1788
CfoI GCGC 1 cut(s) 1692
Cfr13I GGNCC 3 cut(s) 52, 827, 1400
CseI GACGC 1 cut(s) 1279
Csp6I GTAC 2 cut(s) 765, 880
CviQI GTAC 2 cut(s) 765, 880
DdeI CTNAG 6 cut(s) 396, 660, 903, 1125, 1404, 1537
DpnI GATC 8 cut(s) 237, 303, 531, 687, 1026, 1101, 1339, 1749
DpnII GATC 8 cut(s) 235, 301, 529, 685, 1024, 1099, 1337, 1747
DriI GACNNNNNGTC 1 cut(s) 1273
EaeI YGGCCR 1 cut(s) 404
Eam1105I GACNNNNNGTC 1 cut(s) 1273
Eco130I CCWWGG 4 cut(s) 378, 611, 1152, 1431
Eco31I GGTCTC 1 cut(s) 1128
Eco32I GATATC 1 cut(s) 1729
Eco47I GGWCC 2 cut(s) 52, 827
Eco57I CTGAAG 1 cut(s) 1407
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 827
EcoRI GAATTC 2 cut(s) 844, 935
EcoRII CCWGG 3 cut(s) 486, 822, 970
EcoRV GATATC 1 cut(s) 1729
EcoT14I CCWWGG 4 cut(s) 378, 611, 1152, 1431
EcoT22I ATGCAT 2 cut(s) 376, 1233
ErhI CCWWGG 4 cut(s) 378, 611, 1152, 1431
FaqI GGGAC 1 cut(s) 1182
FauI CCCGC 2 cut(s) 87, 857
FauNDI CATATG 1 cut(s) 261
FbaI TGATCA 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 738, 741, 853
FokI GGATG 5 cut(s) 44, 361, 414, 1098, 1715
Fsp4HI GCNGC 3 cut(s) 738, 741, 853
FspBI CTAG 2 cut(s) 194, 254
GlaI GCGC 1 cut(s) 1691
GluI GCNGC 3 cut(s) 738, 741, 853
GsuI CTGGAG 1 cut(s) 806
HaeIII GGCC 2 cut(s) 406, 1402
HapII CCGG 1 cut(s) 1570
HgaI GACGC 1 cut(s) 1279
HhaI GCGC 1 cut(s) 1692
Hin6I GCGC 1 cut(s) 1690
HinP1I GCGC 1 cut(s) 1690
HincII GTYRAC 2 cut(s) 64, 436
HindII GTYRAC 2 cut(s) 64, 436
HindIII AAGCTT 1 cut(s) 1389
HinfI GANTC 5 cut(s) 437, 582, 956, 1516, 1769
HpaII CCGG 1 cut(s) 1570
HphI GGTGA 2 cut(s) 296, 794
Hpy166II GTNNAC 5 cut(s) 64, 436, 568, 765, 1567
Hpy188III TCNNGA 6 cut(s) 305, 600, 989, 1127, 1294, 1732
Hpy8I GTNNAC 5 cut(s) 64, 436, 568, 765, 1567
HpyAV CCTTC 4 cut(s) 439, 606, 1162, 1546
HpyCH4III ACNGT 6 cut(s) 424, 536, 862, 871, 1363, 1564
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 254, 650
HpyF3I CTNAG 6 cut(s) 396, 660, 903, 1125, 1404, 1537
HspAI GCGC 1 cut(s) 1690
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 8 cut(s) 235, 301, 529, 685, 1024, 1099, 1337, 1747
LmnI GCTCC 2 cut(s) 391, 1790
Lsp1109I GCAGC 3 cut(s) 727, 749, 864
LweI GCATC 3 cut(s) 22, 361, 383
MaeI CTAG 2 cut(s) 194, 254
MaeIII GTNAC 5 cut(s) 322, 418, 583, 835, 862
MalI GATC 8 cut(s) 237, 303, 531, 687, 1026, 1101, 1339, 1749
MboI GATC 8 cut(s) 235, 301, 529, 685, 1024, 1099, 1337, 1747
MboII GAAGA 5 cut(s) 78, 554, 680, 1140, 1177
MflI RGATCY 3 cut(s) 235, 1024, 1099
MhlI GDGCHC 1 cut(s) 388
MlsI TGGCCA 1 cut(s) 406
MluNI TGGCCA 1 cut(s) 406
MlyI GAGTC 2 cut(s) 431, 591
MmeI TCCRAC 2 cut(s) 47, 1119
Mox20I TGGCCA 1 cut(s) 406
Mph1103I ATGCAT 2 cut(s) 376, 1233
MroXI GAANNNNTTC 1 cut(s) 595
MscI TGGCCA 1 cut(s) 406
MseI TTAA 5 cut(s) 210, 557, 801, 1683, 1796
MslI CAYNNNNRTG 1 cut(s) 1221
Msp20I TGGCCA 1 cut(s) 406
MspA1I CMGCKG 2 cut(s) 740, 855
MspI CCGG 1 cut(s) 1570
MspR9I CCNGG 3 cut(s) 488, 824, 972
Mva1269I GAATGC 1 cut(s) 1231
MvaI CCWGG 3 cut(s) 488, 824, 972
MwoI GCNNNNNNNGC 3 cut(s) 41, 254, 650
NcoI CCATGG 3 cut(s) 378, 1152, 1431
NdeI CATATG 1 cut(s) 261
NdeII GATC 8 cut(s) 235, 301, 529, 685, 1024, 1099, 1337, 1747
NheI GCTAGC 1 cut(s) 253
NlaIV GGNNCC 2 cut(s) 828, 1437
NmuCI GTSAC 2 cut(s) 583, 835
NsiI ATGCAT 2 cut(s) 376, 1233
NspI RCATGY 4 cut(s) 146, 351, 566, 1231
PaeI GCATGC 1 cut(s) 146
PasI CCCWGGG 1 cut(s) 487
PciI ACATGT 1 cut(s) 562
PctI GAATGC 1 cut(s) 1231
PdmI GAANNNNTTC 1 cut(s) 595
PfeI GAWTC 3 cut(s) 956, 1516, 1769
PflMI CCANNNNNTGG 1 cut(s) 1062
PkrI GCNGC 3 cut(s) 739, 742, 854
PleI GAGTC 2 cut(s) 431, 590
PpsI GAGTC 2 cut(s) 431, 590
PpuMI RGGWCCY 1 cut(s) 827
PscI ACATGT 1 cut(s) 562
PsiI TTATAA 1 cut(s) 1742
Psp5II RGGWCCY 1 cut(s) 827
Psp6I CCWGG 3 cut(s) 486, 822, 970
PspGI CCWGG 3 cut(s) 486, 822, 970
PspN4I GGNNCC 2 cut(s) 828, 1437
PspPI GGNCC 3 cut(s) 52, 827, 1400
PspPPI RGGWCCY 1 cut(s) 827
PstNI CAGNNNCTG 2 cut(s) 1640, 1788
PsuI RGATCY 3 cut(s) 235, 1024, 1099
PvuII CAGCTG 2 cut(s) 740, 855
RsaI GTAC 2 cut(s) 766, 881
RsaNI GTAC 2 cut(s) 765, 880
RseI CAYNNNNRTG 1 cut(s) 1221
SaqAI TTAA 5 cut(s) 210, 557, 801, 1683, 1796
SatI GCNGC 3 cut(s) 738, 741, 853
Sau3AI GATC 8 cut(s) 235, 301, 529, 685, 1024, 1099, 1337, 1747
Sau96I GGNCC 3 cut(s) 52, 827, 1400
ScaI AGTACT 1 cut(s) 881
SchI GAGTC 2 cut(s) 431, 591
ScrFI CCNGG 3 cut(s) 488, 824, 972
SduI GDGCHC 1 cut(s) 388
SfaNI GCATC 3 cut(s) 22, 361, 383
SfcI CTRYAG 2 cut(s) 666, 1598
SinI GGWCC 2 cut(s) 52, 827
SmiMI CAYNNNNRTG 1 cut(s) 1221
SphI GCATGC 1 cut(s) 146
SsiI CCGC 2 cut(s) 94, 850
SspMI CTAG 2 cut(s) 194, 254
StyD4I CCNGG 3 cut(s) 486, 822, 970
StyI CCWWGG 4 cut(s) 378, 611, 1152, 1431
TaaI ACNGT 6 cut(s) 424, 536, 862, 871, 1363, 1564
TaqI TCGA 4 cut(s) 1163, 1242, 1336, 1514
TatI WGTACW 1 cut(s) 879
TfiI GAWTC 3 cut(s) 956, 1516, 1769
Tru1I TTAA 5 cut(s) 210, 557, 801, 1683, 1796
Tru9I TTAA 5 cut(s) 210, 557, 801, 1683, 1796
TscAI CASTG 6 cut(s) 400, 507, 592, 767, 1087, 1366
TseFI GTSAC 2 cut(s) 583, 835
TseI GCWGC 3 cut(s) 737, 740, 852
Tsp45I GTSAC 2 cut(s) 583, 835
TspDTI ATGAA 6 cut(s) 278, 287, 636, 914, 1565, 1673
TspRI CASTG 6 cut(s) 400, 507, 592, 767, 1087, 1366
Van91I CCANNNNNTGG 1 cut(s) 1062
VpaK11BI GGWCC 2 cut(s) 52, 827
XagI CCTNNNNNAGG 1 cut(s) 600
XapI RAATTY 9 cut(s) 266, 514, 844, 935, 975, 1045, 1176, 1188, 1467
XceI RCATGY 4 cut(s) 146, 351, 566, 1231
XmnI GAANNNNTTC 1 cut(s) 595
XspI CTAG 2 cut(s) 194, 254
ZrmI AGTACT 1 cut(s) 881
Zsp2I ATGCAT 2 cut(s) 376, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.