Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016452

Physical Location & Seq

Genomic Coordinates Reverse (-)

53734826 .. 53737666

Gene Structure 2841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGAGGATAAAAAGAATGCCAATGGATGCAGAGTCTTGCAGAATTATTGAATGGATGGAAAAAGGTGTTTGCAATGCCTTGCAGAAGAAGTATCTGAAACTCTTTTGTTCTGTGTGTGAAGTCGTTGAAGGACCAATGATAGGAATCCACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

51

Amino Acids

5.95

Weight (kDa)

8.45

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	4 - 35	1.7e-06	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016452)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0429901
rosa_roxburghii	Rroxscaffold_5G00372260
rosa_samantha	Rh1AG155800 Rh1DG131300 Rh2AG309000 Rh4AG295300 Rh4BG230200 Rh4BG301700 Rh4CG049100 Rh4CG317100 Rh5AG178700 Rh7BG400400 Rh7BG459800 Rh7DG284500
rosa_wichuraiana	Rw4G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	1 cut(s)	140
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	50, 128
AspS9I	GGNCC	1 cut(s)	131
AvaII	GGWCC	1 cut(s)	131
BccI	CCATC	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmsI	GCATC	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	143
BseGI	GGATG	2 cut(s)	31, 60
BseJI	GATNNNNATC	1 cut(s)	143
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	79
BstF5I	GGATG	2 cut(s)	31, 60
BstNSI	RCATGY	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	31, 60
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	131
FaeI	CATG	1 cut(s)	154
FaiI	YATR	1 cut(s)	152
FatI	CATG	1 cut(s)	150
FokI	GGATG	2 cut(s)	38, 67
FspEI	CC	9 cut(s)	8, 33, 37, 41, 48, 91, 114, 126, 147
Hin1II	CATG	1 cut(s)	154
HinfI	GANTC	2 cut(s)	32, 144
Hpy188I	TCNGA	1 cut(s)	96
HpyAV	CCTTC	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	29, 39, 72, 82
Hsp92II	CATG	1 cut(s)	154
LweI	GCATC	1 cut(s)	16
MboII	GAAGA	1 cut(s)	97
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	21
NlaIII	CATG	1 cut(s)	154
NspI	RCATGY	1 cut(s)	154
PciI	ACATGT	1 cut(s)	150
PctI	GAATGC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	40
PpsI	GAGTC	1 cut(s)	40
PscI	ACATGT	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	41
SetI	ASST	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	16
SgeI	CNNG	2 cut(s)	48, 91
SinI	GGWCC	1 cut(s)	131
Sse9I	AATT	1 cut(s)	42
TasI	AATT	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	131
XceI	RCATGY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.