Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0016452

Physical Location & Seq

Genomic Coordinates Forward (+)

60889632 .. 60895318

Gene Structure 5687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG295300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGAGAGATTGGCGTATATGGTCTTGGCCTTGAAGCTCTGCTGCCAAGCAAGAATCAAGCAGAGAAGAGCAGTTTCCCGGTTCCGGTGGAGAATGAAGGTACAGATGCTGCCATAGATGCAACCGTTCTGCGCTCCGACGAGGGTGACCTGAGGTGGGTTTCGAATGGGTATATGGACTCATGTCAAGAGGAGGAGACAAATGAGATTGTTGAAGCCTGGTCACAAGCTACCTGGGTCCGGACTATTCTCAGGATTCGACTAATGGAGGTTGTCTCCCTAGAAGATATCTCCCCTCAACGACACCCTTCCTCCTTACCAATCCGCTCTGAGCTTGATGTTCAATTCAAACAGTTGGAGGTCTTCGCTGTCGATTGCCTTAGGGTTGTGGTACAACAACTGAAGGATGCAGAGATCACTGAGCTGGACTCGCTTCTTCTGTATCAATTAGAACAGAGGCCTTTTTCCGGAGAAGGATTTCAACAATGTATCTGTTCTGGCTTAGAGATGAAGATAAAAACAATGCCAATGCATGCAGAGTCTTGCAGAATTATTGAATGGATGGAAAAAGGTGTTTACAATGCCTTGCAGAAGAAGTATATGGAAACTCTTTTGTTCTGTGTGTGTGAAGTCGTCGAAGGACCAATGATAGGAATACACATTTTCATTCACTTACTCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

228

Amino Acids

25.92

Weight (kDa)

4.65

Isoelectric Point (pI)

57.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	161 - 215	7.1e-09	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016452)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0429901
rosa_roxburghii	Rroxscaffold_5G00372260
rosa_samantha	Rh1AG155800 Rh1DG131300 Rh2AG309000 Rh4AG295300 Rh4BG230200 Rh4BG301700 Rh4CG049100 Rh4CG317100 Rh5AG178700 Rh7BG400400 Rh7BG459800 Rh7DG284500
rosa_wichuraiana	Rw4G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	327
AccIII	TCCGGA	2 cut(s)	240, 467
AciI	CCGC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	422
AfaI	GTAC	2 cut(s)	103, 393
AfiI	CCNNNNNNNGG	5 cut(s)	85, 157, 240, 467, 650
AgsI	TTSAA	6 cut(s)	35, 215, 344, 349, 482, 557
AjnI	CCWGG	2 cut(s)	218, 233
AluBI	AGCT	4 cut(s)	38, 230, 334, 424
AluI	AGCT	4 cut(s)	38, 230, 334, 424
Alw26I	GTCTC	2 cut(s)	191, 280
AlwNI	CAGNNNCTG	1 cut(s)	110
Aor13HI	TCCGGA	2 cut(s)	240, 467
AoxI	GGCC	2 cut(s)	28, 458
ApeKI	GCWGC	2 cut(s)	43, 110
ApoI	RAATTY	1 cut(s)	680
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	238, 641
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	158
AsuII	TTCGAA	1 cut(s)	164
AvaII	GGWCC	2 cut(s)	238, 641
AxyI	CCTNAGG	2 cut(s)	152, 380
BbsI	GAAGAC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	30, 97
BccI	CCATC	1 cut(s)	556
BciT130I	CCWGG	2 cut(s)	220, 235
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	2 cut(s)	191, 280
BfaI	CTAG	1 cut(s)	281
BisI	GCNGC	2 cut(s)	44, 111
BlsI	GCNGC	2 cut(s)	45, 112
Bme1390I	CCNGG	3 cut(s)	80, 220, 235
Bme18I	GGWCC	2 cut(s)	238, 641
BmgT120I	GGNCC	2 cut(s)	238, 641
BmiI	GGNNCC	2 cut(s)	84, 239
BmrFI	CCNGG	3 cut(s)	80, 220, 235
BmsI	GCATC	3 cut(s)	97, 109, 397
BoxI	GACNNNNGTC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	355
BplI	GAGNNNNNCTC	4 cut(s)	260, 292, 413, 445
Bpu14I	TTCGAA	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	3 cut(s)	85, 240, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 157, 240, 467, 650
Bse21I	CCTNAGG	2 cut(s)	152, 380
BseAI	TCCGGA	2 cut(s)	240, 467
BseBI	CCWGG	2 cut(s)	220, 235
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	412, 567
BseLI	CCNNNNNNNGG	5 cut(s)	85, 157, 240, 467, 650
BseMII	CTCAG	4 cut(s)	143, 265, 321, 411
BseRI	GAGGAG	2 cut(s)	206, 209
BseXI	GCAGC	2 cut(s)	30, 97
BshFI	GGCC	2 cut(s)	30, 460
BsiSI	CCGG	4 cut(s)	80, 86, 241, 468
BslI	CCNNNNNNNGG	5 cut(s)	85, 157, 240, 467, 650
BsmAI	GTCTC	2 cut(s)	191, 280
BsnI	GGCC	2 cut(s)	30, 460
Bsp119I	TTCGAA	1 cut(s)	164
Bsp13I	TCCGGA	2 cut(s)	240, 467
Bsp143I	GATC	1 cut(s)	414
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	30, 460
BspCNI	CTCAG	4 cut(s)	144, 264, 322, 412
BspEI	TCCGGA	2 cut(s)	240, 467
BspLI	GGNNCC	2 cut(s)	84, 239
BspQI	GCTCTTC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	414
Bst2UI	CCWGG	2 cut(s)	220, 235
Bst4CI	ACNGT	2 cut(s)	127, 354
Bst6I	CTCTTC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	6 cut(s)	152, 251, 330, 380, 420, 502
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	412, 567
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	1 cut(s)	417
BstMAI	GTCTC	2 cut(s)	191, 280
BstMBI	GATC	1 cut(s)	414
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 430
BstNI	CCWGG	2 cut(s)	220, 235
BstNSI	RCATGY	1 cut(s)	536
BstPAI	GACNNNNGTC	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	3 cut(s)	78, 218, 233
BstV1I	GCAGC	2 cut(s)	30, 97
BstV2I	GAAGAC	1 cut(s)	355
Bsu36I	CCTNAGG	2 cut(s)	152, 380
BsuRI	GGCC	2 cut(s)	30, 460
BtsCI	GGATG	2 cut(s)	412, 567
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	534
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	238, 641
Csp6I	GTAC	2 cut(s)	102, 392
CviAII	CATG	2 cut(s)	183, 533
CviJI	RGCY	8 cut(s)	30, 38, 218, 230, 334, 424, 460, 501
CviKI_1	RGCY	8 cut(s)	30, 38, 218, 230, 334, 424, 460, 501
CviQI	GTAC	2 cut(s)	102, 392
DdeI	CTNAG	6 cut(s)	152, 251, 330, 380, 420, 502
DpnI	GATC	1 cut(s)	416
DpnII	GATC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	460
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	238, 641
Eco57I	CTGAAG	1 cut(s)	422
Eco81I	CCTNAGG	2 cut(s)	152, 380
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	218, 233
EcoRV	GATATC	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	534
FaeI	CATG	2 cut(s)	186, 536
FaiI	YATR	9 cut(s)	19, 21, 116, 174, 176, 184, 534, 600, 602
FatI	CATG	2 cut(s)	182, 532
Fnu4HI	GCNGC	2 cut(s)	44, 111
FokI	GGATG	2 cut(s)	419, 574
Fsp4HI	GCNGC	2 cut(s)	44, 111
FspBI	CTAG	1 cut(s)	281
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	2 cut(s)	44, 111
HaeIII	GGCC	2 cut(s)	30, 460
HapII	CCGG	4 cut(s)	80, 86, 241, 468
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	186, 536
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	5 cut(s)	55, 179, 256, 428, 539
HpaII	CCGG	4 cut(s)	80, 86, 241, 468
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	3 cut(s)	139, 331, 686
Hpy188III	TCNNGA	4 cut(s)	188, 241, 253, 468
Hpy8I	GTNNAC	1 cut(s)	577
Hpy99I	CGWCG	2 cut(s)	143, 638
HpyAV	CCTTC	5 cut(s)	92, 318, 397, 467, 632
HpyCH4III	ACNGT	2 cut(s)	127, 354
HpyCH4V	TGCA	6 cut(s)	122, 410, 532, 536, 546, 589
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 430
HpyF3I	CTNAG	6 cut(s)	152, 251, 330, 380, 420, 502
Hsp92II	CATG	2 cut(s)	186, 536
HspAI	GCGC	1 cut(s)	133
Kpn2I	TCCGGA	2 cut(s)	240, 467
Kzo9I	GATC	1 cut(s)	414
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	140
Lsp1109I	GCAGC	2 cut(s)	30, 97
LweI	GCATC	3 cut(s)	97, 109, 397
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	146, 222
MalI	GATC	1 cut(s)	416
MbiI	CCGCTC	1 cut(s)	327
MboI	GATC	1 cut(s)	414
MboII	GAAGA	6 cut(s)	79, 296, 355, 428, 523, 604
MluCI	AATT	4 cut(s)	344, 446, 549, 680
MlyI	GAGTC	3 cut(s)	173, 422, 548
MmeI	TCCRAC	2 cut(s)	162, 336
MnlI	CCTC	9 cut(s)	136, 147, 184, 187, 262, 306, 322, 352, 450
Mph1103I	ATGCAT	1 cut(s)	534
MroI	TCCGGA	2 cut(s)	240, 467
MroXI	GAANNNNTTC	1 cut(s)	477
MspI	CCGG	4 cut(s)	80, 86, 241, 468
MspR9I	CCNGG	3 cut(s)	80, 220, 235
MvaI	CCWGG	2 cut(s)	220, 235
MwoI	GCNNNNNNNGC	2 cut(s)	119, 430
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	414
NlaIII	CATG	2 cut(s)	186, 536
NlaIV	GGNNCC	2 cut(s)	84, 239
NmuCI	GTSAC	2 cut(s)	146, 222
NsiI	ATGCAT	1 cut(s)	534
NspI	RCATGY	1 cut(s)	536
NspV	TTCGAA	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	536
PceI	AGGCCT	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	55, 256
PkrI	GCNGC	2 cut(s)	45, 112
PleI	GAGTC	3 cut(s)	173, 422, 547
PpsI	GAGTC	3 cut(s)	173, 422, 547
PshAI	GACNNNNGTC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	218, 233
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	218, 233
PspN4I	GGNNCC	2 cut(s)	84, 239
PspPI	GGNCC	2 cut(s)	238, 641
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	103, 393
RsaNI	GTAC	2 cut(s)	102, 392
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	2 cut(s)	44, 111
Sau3AI	GATC	1 cut(s)	414
Sau96I	GGNCC	2 cut(s)	238, 641
SchI	GAGTC	3 cut(s)	173, 422, 548
ScrFI	CCNGG	3 cut(s)	80, 220, 235
SfaNI	GCATC	3 cut(s)	97, 109, 397
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	2 cut(s)	238, 641
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	4 cut(s)	344, 446, 549, 680
SseBI	AGGCCT	1 cut(s)	460
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	281
StuI	AGGCCT	1 cut(s)	460
StyD4I	CCNGG	3 cut(s)	78, 218, 233
TaaI	ACNGT	2 cut(s)	127, 354
TaqI	TCGA	4 cut(s)	164, 259, 372, 636
TasI	AATT	4 cut(s)	344, 446, 549, 680
TfiI	GAWTC	2 cut(s)	55, 256
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	2 cut(s)	146, 222
TseI	GCWGC	2 cut(s)	43, 110
Tsp45I	GTSAC	2 cut(s)	146, 222
TspDTI	ATGAA	3 cut(s)	111, 524, 655
TspRI	CASTG	1 cut(s)	424
VpaK11BI	GGWCC	2 cut(s)	238, 641
XapI	RAATTY	1 cut(s)	680
XceI	RCATGY	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.