Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0016452

Physical Location & Seq

Genomic Coordinates Forward (+)

47261251 .. 47266937

Gene Structure 5687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG301700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGAGAGATTGGCGTATATGGTCTTGGCCTTGAAGCTCTGCTGCCAAGCAAGAATCAAGCAGAGAAGAGCAGTTTCCCGGTTCCGGTGGAGAATGAAGGTACAGATGCTGCCATAGATGCAACCGTTCTGCGCTCCGACGAGGGTGACCTGAGGTGGGTTTCGAATGGGTATATGGACTCATGTCAAGAGGAGGAGACAAATGAGATTGTTGAAGCCTGGTCACAAGCTACCTGGGTCCGGACTATTCTCAGGATTCGACTAATGGAGTCTGAATATATATTTATCAGCTCCCTAGAAGATATCTCCCCTCAACGACACCCTTCCTCCTTACCAATCCGCTCTGAGCTTGATGTTCAATTCAAACAGTTGGAGGTCTTCGCTGTCGATTGCCTTAGGGTTGTGGTACAACAACTGAAGGATGCAGAGATCACTGAGCTGGACTCGCTTCTTCTGTATCAATTAGAACAGAGGCCTTTTTCCGGAGAAGGATTTCAACAATGTATCTGTTCTGGCTTAGAGATGAAGATAAAAACAATGCCAATGCATGCAGAGTCTTGCAGAATTATTGAATGGATGGAAAAAGGTGTTTACAATGCCTTGCAGAAGAAGTATATGGAAACTCTTTTGTTCTGTGTGTGTGAAGTCGTCGAAGGACCAATGATAGGAATACACATTTTCATTCACTTACTCAAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

233

Amino Acids

26.56

Weight (kDa)

4.62

Isoelectric Point (pI)

58.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	173 - 220	1.1e-08	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016452)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0429901
rosa_roxburghii	Rroxscaffold_5G00372260
rosa_samantha	Rh1AG155800 Rh1DG131300 Rh2AG309000 Rh4AG295300 Rh4BG230200 Rh4BG301700 Rh4CG049100 Rh4CG317100 Rh5AG178700 Rh7BG400400 Rh7BG459800 Rh7DG284500
rosa_wichuraiana	Rw4G025570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	342
AccIII	TCCGGA	2 cut(s)	240, 482
AciI	CCGC	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	695
AcuI	CTGAAG	1 cut(s)	437
AfaI	GTAC	2 cut(s)	103, 408
AfiI	CCNNNNNNNGG	5 cut(s)	85, 157, 240, 482, 665
AgsI	TTSAA	6 cut(s)	35, 215, 359, 364, 497, 572
AjnI	CCWGG	2 cut(s)	218, 233
AluBI	AGCT	5 cut(s)	38, 230, 291, 349, 439
AluI	AGCT	5 cut(s)	38, 230, 291, 349, 439
Alw26I	GTCTC	1 cut(s)	191
AlwNI	CAGNNNCTG	1 cut(s)	110
Aor13HI	TCCGGA	2 cut(s)	240, 482
AoxI	GGCC	2 cut(s)	28, 473
ApeKI	GCWGC	2 cut(s)	43, 110
ApoI	RAATTY	1 cut(s)	695
Asp700I	GAANNNNTTC	1 cut(s)	492
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	2 cut(s)	238, 656
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	158
AsuII	TTCGAA	1 cut(s)	164
AvaII	GGWCC	2 cut(s)	238, 656
AxyI	CCTNAGG	2 cut(s)	152, 395
BbsI	GAAGAC	1 cut(s)	370
BbvI	GCAGC	2 cut(s)	30, 97
BccI	CCATC	1 cut(s)	571
BciT130I	CCWGG	2 cut(s)	220, 235
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	296
BisI	GCNGC	2 cut(s)	44, 111
BlsI	GCNGC	2 cut(s)	45, 112
Bme1390I	CCNGG	3 cut(s)	80, 220, 235
Bme18I	GGWCC	2 cut(s)	238, 656
BmgT120I	GGNCC	2 cut(s)	238, 656
BmiI	GGNNCC	2 cut(s)	84, 239
BmrFI	CCNGG	3 cut(s)	80, 220, 235
BmsI	GCATC	3 cut(s)	97, 109, 412
BoxI	GACNNNNGTC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	370
BplI	GAGNNNNNCTC	2 cut(s)	428, 460
Bpu14I	TTCGAA	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	3 cut(s)	85, 240, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	5 cut(s)	85, 157, 240, 482, 665
Bse21I	CCTNAGG	2 cut(s)	152, 395
BseAI	TCCGGA	2 cut(s)	240, 482
BseBI	CCWGG	2 cut(s)	220, 235
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	427, 582
BseLI	CCNNNNNNNGG	5 cut(s)	85, 157, 240, 482, 665
BseMII	CTCAG	4 cut(s)	143, 265, 336, 426
BseRI	GAGGAG	2 cut(s)	206, 209
BseXI	GCAGC	2 cut(s)	30, 97
BshFI	GGCC	2 cut(s)	30, 475
BsiSI	CCGG	4 cut(s)	80, 86, 241, 483
BslI	CCNNNNNNNGG	5 cut(s)	85, 157, 240, 482, 665
BsmAI	GTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	30, 475
Bsp119I	TTCGAA	1 cut(s)	164
Bsp13I	TCCGGA	2 cut(s)	240, 482
Bsp143I	GATC	1 cut(s)	429
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	30, 475
BspCNI	CTCAG	4 cut(s)	144, 264, 337, 427
BspEI	TCCGGA	2 cut(s)	240, 482
BspLI	GGNNCC	2 cut(s)	84, 239
BspQI	GCTCTTC	1 cut(s)	62
BspT104I	TTCGAA	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	342
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	220, 235
Bst4CI	ACNGT	2 cut(s)	127, 369
Bst6I	CTCTTC	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	549
BstDEI	CTNAG	6 cut(s)	152, 251, 345, 395, 435, 517
BstEII	GGTNACC	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	427, 582
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	1 cut(s)	432
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	429
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 445
BstNI	CCWGG	2 cut(s)	220, 235
BstNSI	RCATGY	1 cut(s)	551
BstPAI	GACNNNNGTC	1 cut(s)	183
BstPI	GGTNACC	1 cut(s)	146
BstSCI	CCNGG	3 cut(s)	78, 218, 233
BstV1I	GCAGC	2 cut(s)	30, 97
BstV2I	GAAGAC	1 cut(s)	370
Bsu36I	CCTNAGG	2 cut(s)	152, 395
BsuRI	GGCC	2 cut(s)	30, 475
BtsCI	GGATG	2 cut(s)	427, 582
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	549
CaiI	CAGNNNCTG	1 cut(s)	110
CfoI	GCGC	1 cut(s)	135
Cfr13I	GGNCC	2 cut(s)	238, 656
Csp6I	GTAC	2 cut(s)	102, 407
CviAII	CATG	2 cut(s)	183, 548
CviJI	RGCY	9 cut(s)	30, 38, 218, 230, 291, 349, 439, 475, 516
CviKI_1	RGCY	9 cut(s)	30, 38, 218, 230, 291, 349, 439, 475, 516
CviQI	GTAC	2 cut(s)	102, 407
DdeI	CTNAG	6 cut(s)	152, 251, 345, 395, 435, 517
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco147I	AGGCCT	1 cut(s)	475
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	2 cut(s)	238, 656
Eco57I	CTGAAG	1 cut(s)	437
Eco81I	CCTNAGG	2 cut(s)	152, 395
Eco91I	GGTNACC	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	218, 233
EcoRV	GATATC	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	549
FaeI	CATG	2 cut(s)	186, 551
FatI	CATG	2 cut(s)	182, 547
Fnu4HI	GCNGC	2 cut(s)	44, 111
FokI	GGATG	2 cut(s)	434, 589
Fsp4HI	GCNGC	2 cut(s)	44, 111
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	2 cut(s)	44, 111
HaeIII	GGCC	2 cut(s)	30, 475
HapII	CCGG	4 cut(s)	80, 86, 241, 483
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	186, 551
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	6 cut(s)	55, 179, 256, 269, 443, 554
HpaII	CCGG	4 cut(s)	80, 86, 241, 483
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	592
Hpy188I	TCNGA	4 cut(s)	139, 274, 346, 701
Hpy188III	TCNNGA	4 cut(s)	188, 241, 253, 483
Hpy8I	GTNNAC	1 cut(s)	592
Hpy99I	CGWCG	2 cut(s)	143, 653
HpyAV	CCTTC	5 cut(s)	92, 333, 412, 482, 647
HpyCH4III	ACNGT	2 cut(s)	127, 369
HpyCH4V	TGCA	6 cut(s)	122, 425, 547, 551, 561, 604
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 445
HpyF3I	CTNAG	6 cut(s)	152, 251, 345, 395, 435, 517
Hsp92II	CATG	2 cut(s)	186, 551
HspAI	GCGC	1 cut(s)	133
Kpn2I	TCCGGA	2 cut(s)	240, 482
Kzo9I	GATC	1 cut(s)	429
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	2 cut(s)	140, 296
Lsp1109I	GCAGC	2 cut(s)	30, 97
LweI	GCATC	3 cut(s)	97, 109, 412
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	2 cut(s)	146, 222
MalI	GATC	1 cut(s)	431
MbiI	CCGCTC	1 cut(s)	342
MboI	GATC	1 cut(s)	429
MboII	GAAGA	6 cut(s)	79, 311, 370, 443, 538, 619
MluCI	AATT	4 cut(s)	359, 461, 564, 695
MlyI	GAGTC	4 cut(s)	173, 278, 437, 563
MmeI	TCCRAC	2 cut(s)	162, 351
MnlI	CCTC	8 cut(s)	136, 147, 184, 187, 321, 337, 367, 465
Mph1103I	ATGCAT	1 cut(s)	549
MroI	TCCGGA	2 cut(s)	240, 482
MroXI	GAANNNNTTC	1 cut(s)	492
MspI	CCGG	4 cut(s)	80, 86, 241, 483
MspR9I	CCNGG	3 cut(s)	80, 220, 235
MvaI	CCWGG	2 cut(s)	220, 235
MwoI	GCNNNNNNNGC	2 cut(s)	119, 445
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	2 cut(s)	186, 551
NlaIV	GGNNCC	2 cut(s)	84, 239
NmuCI	GTSAC	2 cut(s)	146, 222
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	1 cut(s)	551
NspV	TTCGAA	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	551
PceI	AGGCCT	1 cut(s)	475
PciSI	GCTCTTC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	492
PfeI	GAWTC	2 cut(s)	55, 256
PkrI	GCNGC	2 cut(s)	45, 112
PleI	GAGTC	4 cut(s)	173, 277, 437, 562
PpsI	GAGTC	4 cut(s)	173, 277, 437, 562
PshAI	GACNNNNGTC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	218, 233
PspEI	GGTNACC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	218, 233
PspN4I	GGNNCC	2 cut(s)	84, 239
PspPI	GGNCC	2 cut(s)	238, 656
PstNI	CAGNNNCTG	1 cut(s)	110
RsaI	GTAC	2 cut(s)	103, 408
RsaNI	GTAC	2 cut(s)	102, 407
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	2 cut(s)	44, 111
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	2 cut(s)	238, 656
SchI	GAGTC	4 cut(s)	173, 278, 437, 563
ScrFI	CCNGG	3 cut(s)	80, 220, 235
SfaNI	GCATC	3 cut(s)	97, 109, 412
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	2 cut(s)	238, 656
SphI	GCATGC	1 cut(s)	551
Sse9I	AATT	4 cut(s)	359, 461, 564, 695
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	1 cut(s)	340
SspMI	CTAG	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	3 cut(s)	78, 218, 233
TaaI	ACNGT	2 cut(s)	127, 369
TaqI	TCGA	4 cut(s)	164, 259, 387, 651
TasI	AATT	4 cut(s)	359, 461, 564, 695
TfiI	GAWTC	2 cut(s)	55, 256
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	146, 222
TseI	GCWGC	2 cut(s)	43, 110
Tsp45I	GTSAC	2 cut(s)	146, 222
TspDTI	ATGAA	3 cut(s)	111, 539, 670
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	238, 656
XapI	RAATTY	1 cut(s)	695
XceI	RCATGY	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	492
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.