No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0429901 |
| rosa_roxburghii | Rroxscaffold_5G00372260 |
| rosa_samantha | Rh1AG155800 Rh1DG131300 Rh2AG309000 Rh4AG295300 Rh4BG230200 Rh4BG301700 Rh4CG049100 Rh4CG317100 Rh5AG178700 Rh7BG400400 Rh7BG459800 Rh7DG284500 |
| rosa_wichuraiana | Rw4G025570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 97 |
| AccB1I | GGYRCC | 1 cut(s) | 97 |
| AclWI | GGATC | 1 cut(s) | 32 |
| AfaI | GTAC | 1 cut(s) | 99 |
| AgsI | TTSAA | 1 cut(s) | 89 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 2 cut(s) | 92, 189 |
| AluI | AGCT | 2 cut(s) | 92, 189 |
| Alw26I | GTCTC | 1 cut(s) | 145 |
| AlwI | GGATC | 1 cut(s) | 32 |
| Ama87I | CYCGRG | 1 cut(s) | 155 |
| AoxI | GGCC | 2 cut(s) | 34, 82 |
| Asp718I | GGTACC | 1 cut(s) | 97 |
| AvaI | CYCGRG | 1 cut(s) | 155 |
| BanI | GGYRCC | 1 cut(s) | 97 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 81, 113 |
| BccI | CCATC | 1 cut(s) | 140 |
| BcoDI | GTCTC | 1 cut(s) | 145 |
| BfaI | CTAG | 1 cut(s) | 190 |
| BmeT110I | CYCGRG | 1 cut(s) | 155 |
| BmiI | GGNNCC | 1 cut(s) | 99 |
| BsaJI | CCNNGG | 2 cut(s) | 19, 37 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 60, 90 |
| Bse1I | ACTGG | 1 cut(s) | 170 |
| BseDI | CCNNGG | 2 cut(s) | 19, 37 |
| BseNI | ACTGG | 1 cut(s) | 170 |
| BshFI | GGCC | 2 cut(s) | 36, 84 |
| BshNI | GGYRCC | 1 cut(s) | 97 |
| BsiHKCI | CYCGRG | 1 cut(s) | 155 |
| BsiSI | CCGG | 1 cut(s) | 138 |
| BslFI | GGGAC | 1 cut(s) | 164 |
| BsmAI | GTCTC | 1 cut(s) | 145 |
| BsmFI | GGGAC | 1 cut(s) | 164 |
| BsnI | GGCC | 2 cut(s) | 36, 84 |
| BsoBI | CYCGRG | 1 cut(s) | 155 |
| Bsp143I | GATC | 1 cut(s) | 24 |
| Bsp19I | CCATGG | 1 cut(s) | 19 |
| BspANI | GGCC | 2 cut(s) | 36, 84 |
| BspLI | GGNNCC | 1 cut(s) | 99 |
| BspPI | GGATC | 1 cut(s) | 32 |
| BspT107I | GGYRCC | 1 cut(s) | 97 |
| BsrI | ACTGG | 1 cut(s) | 170 |
| BssECI | CCNNGG | 2 cut(s) | 19, 37 |
| BssMI | GATC | 1 cut(s) | 24 |
| BssT1I | CCWWGG | 2 cut(s) | 19, 37 |
| Bst6I | CTCTTC | 1 cut(s) | 116 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 166 |
| BstC8I | GCNNGC | 1 cut(s) | 167 |
| BstDSI | CCRYGG | 1 cut(s) | 19 |
| BstKTI | GATC | 1 cut(s) | 27 |
| BstMAI | GTCTC | 1 cut(s) | 145 |
| BstMBI | GATC | 1 cut(s) | 24 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 166 |
| BsuRI | GGCC | 2 cut(s) | 36, 84 |
| BtgI | CCRYGG | 1 cut(s) | 19 |
| BtsIMutI | CAGTG | 1 cut(s) | 177 |
| Cac8I | GCNNGC | 1 cut(s) | 167 |
| Csp6I | GTAC | 1 cut(s) | 98 |
| CviAII | CATG | 2 cut(s) | 20, 32 |
| CviJI | RGCY | 5 cut(s) | 36, 49, 84, 92, 189 |
| CviKI_1 | RGCY | 5 cut(s) | 36, 49, 84, 92, 189 |
| CviQI | GTAC | 1 cut(s) | 98 |
| DpnI | GATC | 1 cut(s) | 26 |
| DpnII | GATC | 1 cut(s) | 24 |
| Eam1104I | CTCTTC | 1 cut(s) | 116 |
| EarI | CTCTTC | 1 cut(s) | 116 |
| Eco130I | CCWWGG | 2 cut(s) | 19, 37 |
| Eco88I | CYCGRG | 1 cut(s) | 155 |
| EcoT14I | CCWWGG | 2 cut(s) | 19, 37 |
| ErhI | CCWWGG | 2 cut(s) | 19, 37 |
| FaeI | CATG | 2 cut(s) | 23, 35 |
| FaiI | YATR | 2 cut(s) | 21, 33 |
| FaqI | GGGAC | 1 cut(s) | 164 |
| FatI | CATG | 2 cut(s) | 19, 31 |
| FspBI | CTAG | 1 cut(s) | 190 |
| HaeIII | GGCC | 2 cut(s) | 36, 84 |
| HapII | CCGG | 1 cut(s) | 138 |
| Hin1II | CATG | 2 cut(s) | 23, 35 |
| HindIII | AAGCTT | 1 cut(s) | 90 |
| HinfI | GANTC | 2 cut(s) | 141, 153 |
| HpaII | CCGG | 1 cut(s) | 138 |
| Hpy188I | TCNGA | 1 cut(s) | 12 |
| HpyCH4V | TGCA | 1 cut(s) | 4 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 166 |
| Hsp92II | CATG | 2 cut(s) | 23, 35 |
| KpnI | GGTACC | 1 cut(s) | 101 |
| Kzo9I | GATC | 1 cut(s) | 24 |
| LpnPI | CCDG | 2 cut(s) | 151, 183 |
| MaeI | CTAG | 1 cut(s) | 190 |
| MalI | GATC | 1 cut(s) | 26 |
| MboI | GATC | 1 cut(s) | 24 |
| MboII | GAAGA | 1 cut(s) | 133 |
| MlyI | GAGTC | 1 cut(s) | 147 |
| MspI | CCGG | 1 cut(s) | 138 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 166 |
| NcoI | CCATGG | 1 cut(s) | 19 |
| NdeII | GATC | 1 cut(s) | 24 |
| NlaIII | CATG | 2 cut(s) | 23, 35 |
| NlaIV | GGNNCC | 1 cut(s) | 99 |
| PaeR7I | CTCGAG | 1 cut(s) | 155 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 162 |
| PfeI | GAWTC | 1 cut(s) | 141 |
| PleI | GAGTC | 1 cut(s) | 147 |
| PpsI | GAGTC | 1 cut(s) | 147 |
| PspN4I | GGNNCC | 1 cut(s) | 99 |
| PspXI | VCTCGAGB | 1 cut(s) | 155 |
| RsaI | GTAC | 1 cut(s) | 99 |
| RsaNI | GTAC | 1 cut(s) | 98 |
| Sau3AI | GATC | 1 cut(s) | 24 |
| SchI | GAGTC | 1 cut(s) | 147 |
| SetI | ASST | 2 cut(s) | 94, 191 |
| Sfr274I | CTCGAG | 1 cut(s) | 155 |
| SlaI | CTCGAG | 1 cut(s) | 155 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| SspMI | CTAG | 1 cut(s) | 190 |
| StyI | CCWWGG | 2 cut(s) | 19, 37 |
| TaqI | TCGA | 2 cut(s) | 144, 156 |
| TfiI | GAWTC | 1 cut(s) | 141 |
| TscAI | CASTG | 1 cut(s) | 177 |
| TspDTI | ATGAA | 1 cut(s) | 126 |
| TspRI | CASTG | 1 cut(s) | 177 |
| XhoI | CTCGAG | 1 cut(s) | 155 |
| XspI | CTAG | 1 cut(s) | 190 |